Wall clock time and date at job start Tue Mar 31 2020 21:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.32886 * 2 1 4 4 C 1.54904 * 110.36492 * 237.64390 * 2 1 3 5 5 C 1.55158 * 101.58206 * 204.15487 * 4 2 1 6 6 H 1.09004 * 110.86642 * 277.06777 * 5 4 2 7 7 N 1.46496 * 110.72160 * 153.86889 * 5 4 2 8 8 C 1.36935 * 120.00221 * 160.02071 * 7 5 4 9 9 H 1.08001 * 120.00176 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00382 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54322 * 102.94332 * 35.50223 * 5 4 2 17 17 N 1.47024 * 107.27064 * 337.81016 * 16 5 4 18 18 C 1.34777 * 125.64781 * 178.97781 * 17 16 5 19 19 O 1.21283 * 119.99995 * 179.97438 * 18 17 16 20 20 C 1.50695 * 119.99947 * 359.97387 * 18 17 16 21 21 C 1.50701 * 109.47123 * 180.02562 * 20 18 17 22 22 C 1.38243 * 119.99668 * 269.72553 * 21 20 18 23 23 C 1.38229 * 119.99693 * 179.76681 * 22 21 20 24 24 C 1.38236 * 120.00152 * 0.48072 * 23 22 21 25 25 C 1.50701 * 120.00305 * 179.76680 * 24 23 22 26 26 F 1.39904 * 109.47234 * 120.02404 * 25 24 23 27 27 F 1.39901 * 109.47589 * 240.02761 * 25 24 23 28 28 C 1.38233 * 119.99827 * 359.79553 * 24 23 22 29 29 C 1.38228 * 120.00240 * 89.99855 * 21 20 18 30 30 H 1.09004 * 109.47187 * 299.21509 * 1 2 3 31 31 H 1.08997 * 109.47322 * 59.21587 * 1 2 3 32 32 H 1.08998 * 109.47382 * 179.22225 * 1 2 3 33 33 H 1.09000 * 111.00319 * 86.07983 * 4 2 1 34 34 H 1.09004 * 111.00857 * 322.22689 * 4 2 1 35 35 H 0.97000 * 120.00132 * 340.01738 * 7 5 4 36 36 H 0.97000 * 119.99717 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.88254 * 97.22934 * 16 5 4 38 38 H 1.08998 * 109.88248 * 218.23770 * 16 5 4 39 39 H 1.09002 * 109.47105 * 299.99791 * 20 18 17 40 40 H 1.08994 * 109.47312 * 60.00001 * 20 18 17 41 41 H 1.08000 * 120.00024 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.00002 * 180.25432 * 23 22 21 43 43 H 1.09005 * 109.46820 * 0.02747 * 25 24 23 44 44 H 1.08005 * 119.99813 * 179.97438 * 28 24 23 45 45 H 1.08001 * 120.00263 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2267 5 6 3.4777 -1.2006 -0.7329 6 1 4.1967 -0.3932 -0.8718 7 7 3.9249 -2.4144 -1.4205 8 6 5.2567 -2.7309 -1.4545 9 1 5.9775 -2.0859 -0.9740 10 6 5.6804 -3.8813 -2.1056 11 7 6.9605 -4.1857 -2.1378 12 14 4.4336 -4.9981 -2.9348 13 1 4.2447 -4.5689 -4.3438 14 1 4.9270 -6.3985 -2.9059 15 1 3.1379 -4.9148 -2.2140 16 6 3.2493 -1.4761 0.7683 17 7 2.0430 -0.7373 1.1691 18 6 1.4972 -0.7339 2.4014 19 8 0.4965 -0.0843 2.6195 20 6 2.1303 -1.5371 3.5081 21 6 1.3319 -1.3640 4.7745 22 6 1.6453 -0.3457 5.6553 23 6 0.9099 -0.1839 6.8145 24 6 -0.1325 -1.0464 7.0978 25 6 -0.9309 -0.8733 8.3642 26 9 -2.2733 -0.6465 8.0419 27 9 -0.8273 -2.0310 9.1428 28 6 -0.4422 -2.0682 6.2198 29 6 0.2899 -2.2268 5.0580 30 1 -0.3634 0.5016 0.8970 31 1 -0.3634 0.5259 -0.8828 32 1 -0.3634 -1.0275 -0.0139 33 1 2.1398 -0.1286 -2.0999 34 1 1.4510 -1.6496 -1.4391 35 1 3.2775 -2.9940 -1.8517 36 1 7.2565 -4.9895 -2.5931 37 1 3.1013 -2.5437 0.9309 38 1 4.1076 -1.1292 1.3436 39 1 2.1451 -2.5909 3.2296 40 1 3.1506 -1.1900 3.6711 41 1 2.4626 0.3255 5.4361 42 1 1.1522 0.6142 7.5007 43 1 -0.5431 -0.0226 8.9247 44 1 -1.2564 -2.7423 6.4414 45 1 0.0481 -3.0253 4.3722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:02 Heat of formation + Delta-G solvation = -113.154963 kcal Electronic energy + Delta-G solvation = -28670.902136 eV Core-core repulsion = 24323.423979 eV Total energy + Delta-G solvation = -4347.478158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.96582 -47.97026 -41.44102 -40.23650 -38.67264 -36.05559 -34.56052 -33.50982 -32.83029 -32.02153 -30.53934 -29.73901 -26.68636 -26.15998 -25.41524 -23.88874 -23.18200 -22.02286 -21.79832 -19.95528 -19.59915 -18.51334 -18.31796 -18.18738 -17.98574 -17.47515 -16.78410 -16.55271 -16.22595 -15.97044 -15.50074 -15.41752 -15.00461 -14.93707 -14.85260 -14.52085 -14.42592 -14.39825 -14.35965 -13.82288 -13.71272 -13.56156 -13.44073 -13.18421 -13.01859 -12.98501 -12.83836 -12.75954 -12.36898 -12.15580 -12.05894 -11.95889 -11.82663 -11.80290 -11.56094 -11.04078 -10.65446 -9.95430 -9.86069 -9.61664 -9.35735 -8.00537 -5.35635 0.05383 0.37800 1.41262 1.43233 1.50323 1.62271 1.97660 2.50012 2.63400 2.77512 3.26599 3.29425 3.39568 3.57719 3.64401 3.70059 3.83247 3.90453 3.98557 4.00078 4.09172 4.14235 4.28906 4.34499 4.39239 4.45247 4.48546 4.55381 4.62205 4.73678 4.79364 4.84333 4.88748 5.01231 5.10862 5.13673 5.22260 5.27485 5.30868 5.33344 5.53379 5.54774 5.79787 5.88447 6.23093 6.55774 7.08098 7.17786 7.82836 8.00757 9.20188 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002296 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.199333 B =12191.679060 C =12920.475383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.084 0.916 4 C -0.128 4.128 5 C 0.168 3.832 6 H 0.072 0.928 7 N -0.740 5.740 8 C -0.229 4.229 9 H 0.065 0.935 10 C -0.059 4.059 11 N -0.981 5.981 12 Si 0.949 3.051 13 H -0.280 1.280 14 H -0.301 1.301 15 H -0.251 1.251 16 C 0.085 3.915 17 N -0.611 5.611 18 C 0.530 3.470 19 O -0.566 6.566 20 C -0.101 4.101 21 C -0.051 4.051 22 C -0.118 4.118 23 C -0.081 4.081 24 C -0.186 4.186 25 C 0.311 3.689 26 F -0.215 7.215 27 F -0.212 7.212 28 C -0.095 4.095 29 C -0.123 4.123 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 9.708 17.542 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.102 0.898 4 C -0.167 4.167 5 C 0.058 3.942 6 H 0.090 0.910 7 N -0.383 5.383 8 C -0.360 4.360 9 H 0.083 0.917 10 C -0.251 4.251 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.228 1.228 15 H -0.176 1.176 16 C -0.041 4.041 17 N -0.345 5.345 18 C 0.320 3.680 19 O -0.446 6.446 20 C -0.141 4.141 21 C -0.051 4.051 22 C -0.136 4.136 23 C -0.098 4.098 24 C -0.187 4.187 25 C 0.258 3.742 26 F -0.196 7.196 27 F -0.194 7.194 28 C -0.113 4.113 29 C -0.141 4.141 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.182 0.818 43 H 0.178 0.822 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.381 10.037 17.764 25.551 hybrid contribution -0.276 -1.390 -0.812 1.633 sum -15.657 8.646 16.952 24.643 Atomic orbital electron populations 1.22058 0.93809 1.01892 1.03392 1.21939 0.95104 0.95742 0.83921 0.89770 1.23112 0.95219 1.00728 0.97597 1.21330 0.94920 0.88641 0.89281 0.91030 1.42698 1.04120 1.26248 1.65228 1.19027 0.83909 1.05196 1.27862 0.91662 1.25435 0.97333 1.00182 1.02143 1.69867 1.15340 1.28027 1.49851 0.85512 0.79738 0.78035 0.79053 1.20661 1.22832 1.17572 1.22916 0.86156 0.96272 0.98771 1.48669 1.28375 1.48236 1.09208 1.20438 0.83624 0.81586 0.82378 1.90639 1.26461 1.45194 1.82258 1.20752 1.00737 1.02359 0.90230 1.19620 0.95474 0.95380 0.94650 1.21282 1.00835 0.97411 0.94100 1.21235 0.93043 0.98180 0.97382 1.20558 1.00416 0.99889 0.97806 1.20822 0.77463 0.87171 0.88750 1.92989 1.37874 1.94853 1.93879 1.92988 1.95947 1.54085 1.76341 1.21074 0.99047 0.97294 0.93934 1.21137 0.95504 1.00159 0.97253 0.91436 0.90195 0.93811 0.88086 0.90793 0.79886 0.93414 0.91728 0.91010 0.86992 0.85946 0.83823 0.81802 0.82222 0.85438 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.71 71.98 0.63 -3.05 16 2 C 0.14 3.30 3.77 45.46 0.17 3.47 16 3 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.13 -3.21 6.11 31.98 0.20 -3.02 16 5 C 0.17 5.32 3.59 46.18 0.17 5.48 16 6 H 0.07 2.33 8.12 -2.38 -0.02 2.31 16 7 N -0.74 -30.27 4.98 -317.33 -1.58 -31.85 16 8 C -0.23 -11.80 10.46 84.03 0.88 -10.92 16 9 H 0.07 3.67 8.06 -2.91 -0.02 3.64 16 10 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 11 N -0.98 -59.77 13.97 21.65 0.30 -59.47 16 12 Si 0.95 42.75 27.73 68.60 1.90 44.66 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.25 -10.10 6.52 99.48 0.65 -9.45 16 16 C 0.08 2.40 6.24 86.73 0.54 2.94 16 17 N -0.61 -16.02 3.24 -788.17 -2.56 -18.57 16 18 C 0.53 14.13 7.62 87.66 0.67 14.80 16 19 O -0.57 -18.08 13.69 -3.04 -0.04 -18.12 16 20 C -0.10 -2.13 5.02 29.10 0.15 -1.98 16 21 C -0.05 -1.09 4.37 -19.87 -0.09 -1.18 16 22 C -0.12 -2.17 9.70 22.27 0.22 -1.96 16 23 C -0.08 -1.25 9.67 22.27 0.22 -1.03 16 24 C -0.19 -3.38 5.37 -19.87 -0.11 -3.49 16 25 C 0.31 4.64 5.45 71.24 0.39 5.02 16 26 F -0.21 -4.23 17.26 44.97 0.78 -3.46 16 27 F -0.21 -3.96 17.26 44.97 0.78 -3.19 16 28 C -0.10 -2.02 9.60 22.27 0.21 -1.80 16 29 C -0.12 -2.70 9.70 22.27 0.22 -2.49 16 30 H 0.07 1.90 5.89 -2.38 -0.01 1.88 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 1.91 7.92 -2.38 -0.02 1.89 16 35 H 0.37 14.63 5.58 -92.71 -0.52 14.11 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.06 1.97 8.03 -2.39 -0.02 1.95 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.19 8.08 -2.39 -0.02 2.17 16 40 H 0.12 2.12 8.08 -2.39 -0.02 2.10 16 41 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.16 1.27 7.95 -2.91 -0.02 1.24 16 43 H 0.16 0.98 7.88 -2.38 -0.02 0.96 16 44 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.13 378.53 4.93 -64.20 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.43 Total: 27.79 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.92 Total: -1.99 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -3.83 Total: -109.89 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.04 Total: -18.12 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 1.55 Total: -6.64 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.90 Total: 44.66 kcal Total: -69.13 4.93 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.958 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds