Wall clock time and date at job start Tue Mar 31 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99583 * 2 1 4 4 C 1.54317 * 109.88492 * 121.09323 * 2 1 3 5 5 C 1.55156 * 102.94483 * 141.61035 * 4 2 1 6 6 H 1.09002 * 110.99783 * 82.61330 * 5 4 2 7 7 N 1.46496 * 111.00459 * 206.42456 * 5 4 2 8 8 C 1.36943 * 119.99759 * 205.00172 * 7 5 4 9 9 H 1.08002 * 119.99942 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99872 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99937 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99900 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47034 * 59.99459 * 12 10 8 14 14 H 1.48498 * 109.47162 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47209 * 299.99751 * 12 10 8 16 16 C 1.55130 * 101.48388 * 324.33733 * 5 4 2 17 17 N 1.47016 * 109.88456 * 238.90635 * 2 1 3 18 18 C 1.34784 * 125.65076 * 61.60260 * 17 2 1 19 19 O 1.21283 * 119.99649 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72882 * 18 17 2 21 21 C 1.50700 * 109.46617 * 180.02562 * 20 18 17 22 22 C 1.38239 * 119.99928 * 269.72082 * 21 20 18 23 23 C 1.38231 * 120.00184 * 179.77059 * 22 21 20 24 24 C 1.38238 * 119.99833 * 0.50596 * 23 22 21 25 25 C 1.50703 * 119.99865 * 179.72584 * 24 23 22 26 26 F 1.39907 * 109.46975 * 120.02309 * 25 24 23 27 27 F 1.39898 * 109.46908 * 240.01926 * 25 24 23 28 28 C 1.38227 * 120.00051 * 359.74745 * 24 23 22 29 29 C 1.38229 * 120.00371 * 90.00212 * 21 20 18 30 30 H 1.09006 * 109.47024 * 179.64024 * 1 2 3 31 31 H 1.09000 * 109.47464 * 299.64066 * 1 2 3 32 32 H 1.09001 * 109.47221 * 59.64267 * 1 2 3 33 33 H 1.08998 * 110.72688 * 259.98062 * 4 2 1 34 34 H 1.09006 * 110.71963 * 23.24656 * 4 2 1 35 35 H 0.96998 * 120.00208 * 25.00779 * 7 5 4 36 36 H 0.96999 * 120.00201 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.49697 * 278.45056 * 16 5 4 38 38 H 1.09001 * 110.34287 * 156.05818 * 16 5 4 39 39 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 40 40 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 41 41 H 1.08005 * 120.00032 * 359.97438 * 22 21 20 42 42 H 1.07995 * 120.00091 * 180.23151 * 23 22 21 43 43 H 1.09000 * 109.47078 * 0.02562 * 25 24 23 44 44 H 1.08004 * 120.00470 * 179.97438 * 28 24 23 45 45 H 1.08005 * 120.00055 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 6 3.2877 -1.5142 0.6924 6 1 4.1656 -0.8688 0.6611 7 7 3.5532 -2.7194 1.4817 8 6 4.8166 -3.2463 1.5229 9 1 5.6172 -2.7730 0.9738 10 6 5.0681 -4.3886 2.2703 11 7 4.0925 -4.9650 2.9398 12 14 6.7912 -5.1077 2.3260 13 1 7.7301 -4.1007 2.8825 14 1 6.7953 -6.3171 3.1876 15 1 7.2183 -5.4766 0.9524 16 6 2.8100 -1.8824 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3620 -2.4658 19 8 1.1428 0.6207 -2.7180 20 6 2.3890 -1.1862 -3.5853 21 6 1.9958 -0.5834 -4.9093 22 6 0.8309 -0.9878 -5.5342 23 6 0.4677 -0.4315 -6.7464 24 6 1.2748 0.5217 -7.3389 25 6 0.8820 1.1237 -8.6634 26 9 0.7313 2.5073 -8.5205 27 9 1.8776 0.8584 -9.6098 28 6 2.4423 0.9223 -6.7167 29 6 2.8028 0.3696 -5.5019 30 1 -0.3633 -1.0277 -0.0065 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 2.3529 -0.0460 2.0201 34 1 1.3051 -1.4459 1.6183 35 1 2.8342 -3.1443 1.9750 36 1 4.2683 -5.7630 3.4624 37 1 2.1802 -2.7717 -0.7115 38 1 3.6656 -2.0411 -1.3932 39 1 3.4756 -1.1987 -3.5006 40 1 2.0078 -2.2054 -3.5221 41 1 0.2027 -1.7361 -5.0737 42 1 -0.4442 -0.7447 -7.2327 43 1 -0.0603 0.6880 -8.9954 44 1 3.0731 1.6667 -7.1797 45 1 3.7151 0.6826 -5.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989169419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:05 Heat of formation + Delta-G solvation = -102.938936 kcal Electronic energy + Delta-G solvation = -28522.831196 eV Core-core repulsion = 24175.796039 eV Total energy + Delta-G solvation = -4347.035157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.25046 -47.23806 -40.31420 -39.31213 -37.38749 -34.27067 -33.65379 -31.77818 -31.41643 -31.26724 -28.99558 -28.39886 -25.52358 -25.29717 -23.89826 -23.13184 -22.13855 -21.01829 -20.32908 -18.71328 -17.79224 -17.62599 -17.47421 -17.45801 -16.89191 -16.12733 -15.75391 -15.40799 -14.96683 -14.66308 -14.45787 -14.19003 -14.02806 -13.71106 -13.69926 -13.61637 -13.41778 -13.17498 -13.04618 -12.70335 -12.64617 -12.50299 -12.27645 -12.08785 -11.94477 -11.70697 -11.31030 -11.20966 -11.12857 -11.05957 -10.81565 -10.69088 -10.37164 -10.10855 -9.84620 -9.74704 -9.18927 -9.11044 -9.02223 -8.40652 -7.16729 -5.91816 -3.23168 0.83947 1.14536 2.75756 3.06604 3.35169 3.40331 3.41186 3.42715 3.49404 3.86438 4.22843 4.44834 4.50067 4.62632 4.67811 4.69915 4.76776 5.03724 5.09195 5.12644 5.13854 5.21649 5.36256 5.37479 5.44561 5.51928 5.60503 5.64728 5.73348 5.75606 5.77624 6.00136 6.04792 6.07438 6.08797 6.12818 6.29504 6.32515 6.40493 6.42335 6.59823 6.64936 6.76885 7.55938 7.75239 8.25155 8.31772 9.37521 9.90694 10.25476 11.29920 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002209 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.235465 B =12672.905049 C =13794.516792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.909 3.091 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.071 3.929 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.544 6.544 20 C -0.106 4.106 21 C -0.035 4.035 22 C -0.108 4.108 23 C -0.084 4.084 24 C -0.177 4.177 25 C 0.314 3.686 26 F -0.201 7.201 27 F -0.202 7.202 28 C -0.078 4.078 29 C -0.107 4.107 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 9.391 -18.297 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.055 4.055 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.422 6.422 20 C -0.145 4.145 21 C -0.035 4.035 22 C -0.126 4.126 23 C -0.102 4.102 24 C -0.178 4.178 25 C 0.260 3.740 26 F -0.182 7.182 27 F -0.183 7.183 28 C -0.096 4.096 29 C -0.125 4.125 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.134 0.866 44 H 0.144 0.856 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.975 9.881 -18.493 22.433 hybrid contribution 0.801 -0.646 0.215 1.052 sum -7.173 9.235 -18.278 21.698 Atomic orbital electron populations 1.22124 0.95201 1.02114 1.02389 1.21501 0.94193 0.96062 0.84697 0.91090 1.23057 0.99209 0.99674 0.95788 1.21326 0.94688 0.89460 0.88506 0.91365 1.42320 1.09623 1.27744 1.55396 1.19203 0.86821 1.06947 1.25256 0.90988 1.24776 0.97677 0.98272 0.99680 1.69643 1.30932 1.22294 1.34730 0.86255 0.83881 0.78458 0.77483 1.21119 1.21619 1.21108 1.23578 0.94515 0.87474 0.99963 1.48651 1.52262 1.28922 1.04502 1.20001 0.80680 0.85222 0.82340 1.90690 1.40349 1.27765 1.83407 1.20736 1.03298 1.00295 0.90193 1.19508 0.94402 0.95349 0.94252 1.20980 0.96195 1.00450 0.94985 1.20840 0.98643 0.95248 0.95504 1.20268 0.98581 1.01775 0.97174 1.20392 0.90662 0.77351 0.85557 1.93020 1.96183 1.32749 1.96231 1.93010 1.65090 1.93634 1.66549 1.20890 0.95317 0.98419 0.94971 1.21011 1.00170 0.96211 0.95063 0.92595 0.91943 0.91649 0.90340 0.90405 0.77832 0.93220 0.91208 0.91213 0.87578 0.87627 0.85357 0.85329 0.86598 0.85560 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.10 37.16 0.34 -1.79 16 2 C 0.14 1.97 3.46 -66.96 -0.23 1.74 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.06 6.12 -24.90 -0.15 -2.22 16 5 C 0.17 3.04 3.73 -65.66 -0.24 2.80 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.71 -16.08 5.24 -51.24 -0.27 -16.34 16 8 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 12 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.07 1.09 6.40 -2.41 -0.02 1.08 16 17 N -0.61 -8.85 3.06 -162.89 -0.50 -9.35 16 18 C 0.53 7.66 7.64 -10.98 -0.08 7.58 16 19 O -0.54 -9.42 15.07 5.56 0.08 -9.34 16 20 C -0.11 -1.19 4.83 -29.04 -0.14 -1.33 16 21 C -0.03 -0.39 4.37 -104.63 -0.46 -0.85 16 22 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 23 C -0.08 -0.77 9.67 -39.58 -0.38 -1.15 16 24 C -0.18 -1.76 5.37 -104.62 -0.56 -2.33 16 25 C 0.31 2.67 5.45 36.01 0.20 2.87 16 26 F -0.20 -2.11 17.26 2.25 0.04 -2.08 16 27 F -0.20 -2.01 17.26 2.25 0.04 -1.97 16 28 C -0.08 -0.84 9.60 -39.58 -0.38 -1.22 16 29 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.96 6.88 -51.93 -0.36 0.60 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.19 7.71 -51.93 -0.40 0.79 16 35 H 0.39 9.38 7.76 -40.82 -0.32 9.06 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 39 H 0.11 1.06 7.80 -51.93 -0.41 0.65 16 40 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.13 0.78 7.95 -52.49 -0.42 0.36 16 43 H 0.12 0.57 7.88 -51.93 -0.41 0.16 16 44 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -30.79 383.07 -8.72 -39.51 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.46 Total: 8.12 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.13 Total: -4.74 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.04 Total: -51.37 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.79 -8.72 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.424 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds