Wall clock time and date at job start Tue Mar 31 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99583 * 2 1 4 4 C 1.54317 * 109.88492 * 121.09323 * 2 1 3 5 5 C 1.55156 * 102.94483 * 141.61035 * 4 2 1 6 6 H 1.09002 * 110.99783 * 82.61330 * 5 4 2 7 7 N 1.46496 * 111.00459 * 206.42456 * 5 4 2 8 8 C 1.36943 * 119.99759 * 205.00172 * 7 5 4 9 9 H 1.08002 * 119.99942 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99872 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99937 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99900 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47034 * 59.99459 * 12 10 8 14 14 H 1.48498 * 109.47162 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47209 * 299.99751 * 12 10 8 16 16 C 1.55130 * 101.48388 * 324.33733 * 5 4 2 17 17 N 1.47016 * 109.88456 * 238.90635 * 2 1 3 18 18 C 1.34784 * 125.65076 * 61.60260 * 17 2 1 19 19 O 1.21283 * 119.99649 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99774 * 179.72882 * 18 17 2 21 21 C 1.50700 * 109.46617 * 180.02562 * 20 18 17 22 22 C 1.38239 * 119.99928 * 269.72082 * 21 20 18 23 23 C 1.38231 * 120.00184 * 179.77059 * 22 21 20 24 24 C 1.38238 * 119.99833 * 0.50596 * 23 22 21 25 25 C 1.50703 * 119.99865 * 179.72584 * 24 23 22 26 26 F 1.39907 * 109.46975 * 120.02309 * 25 24 23 27 27 F 1.39898 * 109.46908 * 240.01926 * 25 24 23 28 28 C 1.38227 * 120.00051 * 359.74745 * 24 23 22 29 29 C 1.38229 * 120.00371 * 90.00212 * 21 20 18 30 30 H 1.09006 * 109.47024 * 179.64024 * 1 2 3 31 31 H 1.09000 * 109.47464 * 299.64066 * 1 2 3 32 32 H 1.09001 * 109.47221 * 59.64267 * 1 2 3 33 33 H 1.08998 * 110.72688 * 259.98062 * 4 2 1 34 34 H 1.09006 * 110.71963 * 23.24656 * 4 2 1 35 35 H 0.96998 * 120.00208 * 25.00779 * 7 5 4 36 36 H 0.96999 * 120.00201 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.49697 * 278.45056 * 16 5 4 38 38 H 1.09001 * 110.34287 * 156.05818 * 16 5 4 39 39 H 1.09001 * 109.46809 * 299.99238 * 20 18 17 40 40 H 1.08993 * 109.47525 * 59.99679 * 20 18 17 41 41 H 1.08005 * 120.00032 * 359.97438 * 22 21 20 42 42 H 1.07995 * 120.00091 * 180.23151 * 23 22 21 43 43 H 1.09000 * 109.47078 * 0.02562 * 25 24 23 44 44 H 1.08004 * 120.00470 * 179.97438 * 28 24 23 45 45 H 1.08005 * 120.00055 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 1.2427 5 6 3.2877 -1.5142 0.6924 6 1 4.1656 -0.8688 0.6611 7 7 3.5532 -2.7194 1.4817 8 6 4.8166 -3.2463 1.5229 9 1 5.6172 -2.7730 0.9738 10 6 5.0681 -4.3886 2.2703 11 7 4.0925 -4.9650 2.9398 12 14 6.7912 -5.1077 2.3260 13 1 7.7301 -4.1007 2.8825 14 1 6.7953 -6.3171 3.1876 15 1 7.2183 -5.4766 0.9524 16 6 2.8100 -1.8824 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3620 -2.4658 19 8 1.1428 0.6207 -2.7180 20 6 2.3890 -1.1862 -3.5853 21 6 1.9958 -0.5834 -4.9093 22 6 0.8309 -0.9878 -5.5342 23 6 0.4677 -0.4315 -6.7464 24 6 1.2748 0.5217 -7.3389 25 6 0.8820 1.1237 -8.6634 26 9 0.7313 2.5073 -8.5205 27 9 1.8776 0.8584 -9.6098 28 6 2.4423 0.9223 -6.7167 29 6 2.8028 0.3696 -5.5019 30 1 -0.3633 -1.0277 -0.0065 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5194 -0.8868 33 1 2.3529 -0.0460 2.0201 34 1 1.3051 -1.4459 1.6183 35 1 2.8342 -3.1443 1.9750 36 1 4.2683 -5.7630 3.4624 37 1 2.1802 -2.7717 -0.7115 38 1 3.6656 -2.0411 -1.3932 39 1 3.4756 -1.1987 -3.5006 40 1 2.0078 -2.2054 -3.5221 41 1 0.2027 -1.7361 -5.0737 42 1 -0.4442 -0.7447 -7.2327 43 1 -0.0603 0.6880 -8.9954 44 1 3.0731 1.6667 -7.1797 45 1 3.7151 0.6826 -5.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989169419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:05 Heat of formation + Delta-G solvation = -119.064756 kcal Electronic energy + Delta-G solvation = -28523.530464 eV Core-core repulsion = 24175.796039 eV Total energy + Delta-G solvation = -4347.734425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.96250 -47.96621 -41.40010 -40.21757 -38.64285 -35.96844 -34.53014 -33.26140 -32.78299 -32.01625 -30.12803 -29.69373 -26.70984 -26.18916 -25.64892 -23.88268 -23.21270 -22.03024 -21.64548 -19.88437 -19.24313 -18.50635 -18.31914 -18.18764 -18.10133 -17.35874 -16.74436 -16.48214 -16.28614 -15.73574 -15.41526 -15.34607 -15.27248 -14.93099 -14.79497 -14.43955 -14.37226 -14.35443 -14.16141 -13.88129 -13.69546 -13.50235 -13.41853 -13.11549 -12.98321 -12.84749 -12.79344 -12.70625 -12.34951 -12.13300 -12.05992 -12.00521 -11.82758 -11.71786 -11.47964 -11.02651 -10.84510 -9.94849 -9.86386 -9.64890 -9.03190 -7.93022 -5.22705 0.05691 0.38318 1.52474 1.53454 1.59466 1.62380 1.97954 2.57477 2.65318 2.77750 3.26865 3.38650 3.48054 3.58093 3.66779 3.84722 3.91914 3.97251 3.99608 4.01989 4.09560 4.17455 4.31302 4.35157 4.39736 4.47564 4.52481 4.55692 4.62886 4.74681 4.77495 4.86330 4.88644 5.01901 5.08538 5.15005 5.22732 5.26292 5.33769 5.39545 5.44029 5.53800 5.56547 5.88944 6.27886 6.57015 7.16207 7.35935 8.07543 8.31372 9.29504 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002209 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.235465 B =12672.905049 C =13794.516792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.164 3.836 6 H 0.066 0.934 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.080 0.920 10 C -0.069 4.069 11 N -0.966 5.966 12 Si 0.968 3.032 13 H -0.280 1.280 14 H -0.300 1.300 15 H -0.276 1.276 16 C 0.086 3.914 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.573 6.573 20 C -0.100 4.100 21 C -0.052 4.052 22 C -0.120 4.120 23 C -0.081 4.081 24 C -0.186 4.186 25 C 0.311 3.689 26 F -0.215 7.215 27 F -0.212 7.212 28 C -0.095 4.095 29 C -0.121 4.121 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.251 0.749 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.129 0.871 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 9.618 -19.681 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.084 0.916 7 N -0.361 5.361 8 C -0.374 4.374 9 H 0.098 0.902 10 C -0.262 4.262 11 N -0.616 5.616 12 Si 0.797 3.203 13 H -0.206 1.206 14 H -0.227 1.227 15 H -0.202 1.202 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.453 6.453 20 C -0.139 4.139 21 C -0.052 4.052 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.187 4.187 25 C 0.258 3.742 26 F -0.196 7.196 27 F -0.193 7.193 28 C -0.113 4.113 29 C -0.139 4.139 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.177 0.823 44 H 0.147 0.853 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.332 10.154 -19.917 23.858 hybrid contribution 0.874 -0.604 0.598 1.219 sum -7.458 9.550 -19.320 22.805 Atomic orbital electron populations 1.22039 0.94296 1.01999 1.02620 1.21531 0.94884 0.95899 0.84216 0.90995 1.22949 0.97792 0.99454 0.96349 1.21495 0.95851 0.87963 0.89309 0.91577 1.42429 1.08470 1.29033 1.56211 1.19587 0.88032 1.06229 1.23563 0.90187 1.25495 1.00827 0.99373 1.00505 1.69789 1.32654 1.22810 1.36361 0.85298 0.80216 0.77282 0.77460 1.20636 1.22667 1.20218 1.23211 0.94816 0.87385 0.98553 1.48668 1.52156 1.28556 1.04883 1.20529 0.80001 0.84972 0.82615 1.90677 1.41714 1.29176 1.83726 1.20750 1.03892 1.00337 0.88928 1.19633 0.95194 0.95940 0.94471 1.21277 0.96039 1.00875 0.95585 1.21223 0.99470 0.94237 0.94981 1.20559 0.98355 1.01907 0.97869 1.20811 0.91975 0.76617 0.84784 1.92990 1.96253 1.34077 1.96276 1.92987 1.65885 1.93623 1.66816 1.21088 0.96151 0.98855 0.95219 1.21162 1.00664 0.96599 0.95501 0.92809 0.90120 0.92996 0.89366 0.90661 0.79043 0.94036 0.91890 0.90111 0.86322 0.86074 0.84042 0.81903 0.82287 0.85305 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.10 71.98 0.66 -3.15 16 2 C 0.14 3.73 3.46 45.34 0.16 3.89 16 3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.13 -3.62 6.12 31.78 0.19 -3.43 16 5 C 0.16 5.62 3.73 46.46 0.17 5.79 16 6 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 7 N -0.72 -32.36 5.24 -316.01 -1.66 -34.01 16 8 C -0.24 -12.19 9.96 84.03 0.84 -11.35 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 11 N -0.97 -55.58 13.06 21.65 0.28 -55.30 16 12 Si 0.97 43.29 29.55 68.60 2.03 45.32 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 16 C 0.09 2.54 6.40 86.93 0.56 3.09 16 17 N -0.61 -16.86 3.06 -787.63 -2.41 -19.27 16 18 C 0.53 14.65 7.64 87.65 0.67 15.32 16 19 O -0.57 -19.39 15.07 -3.04 -0.05 -19.44 16 20 C -0.10 -2.09 4.83 29.10 0.14 -1.95 16 21 C -0.05 -1.12 4.37 -19.87 -0.09 -1.21 16 22 C -0.12 -2.26 9.70 22.27 0.22 -2.05 16 23 C -0.08 -1.29 9.67 22.27 0.22 -1.08 16 24 C -0.19 -3.40 5.37 -19.87 -0.11 -3.51 16 25 C 0.31 4.66 5.45 71.24 0.39 5.05 16 26 F -0.21 -4.26 17.26 44.97 0.78 -3.48 16 27 F -0.21 -3.93 17.26 44.97 0.78 -3.15 16 28 C -0.10 -1.99 9.60 22.27 0.21 -1.78 16 29 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 30 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.46 6.88 -2.39 -0.02 1.45 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.22 7.71 -2.38 -0.02 2.20 16 35 H 0.38 18.35 7.76 -92.71 -0.72 17.63 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.21 7.48 -2.39 -0.02 2.19 16 39 H 0.12 2.16 7.80 -2.39 -0.02 2.14 16 40 H 0.12 2.14 8.08 -2.39 -0.02 2.12 16 41 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.16 1.34 7.95 -2.91 -0.02 1.32 16 43 H 0.16 1.01 7.88 -2.39 -0.02 0.99 16 44 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.98 383.07 4.94 -61.04 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.29 Total: 30.31 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.91 Total: -2.02 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -3.79 Total: -108.58 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.55 Total: -6.63 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.98 4.94 -61.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989169419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.026 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds