Wall clock time and date at job start Tue Mar 31 2020 21:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54326 * 109.88412 * 238.90429 * 2 1 3 5 5 C 1.55151 * 102.94313 * 262.77524 * 4 2 1 6 6 H 1.09004 * 111.00792 * 82.56822 * 5 4 2 7 7 N 1.46491 * 111.00691 * 206.42272 * 5 4 2 8 8 C 1.36941 * 120.00145 * 198.64845 * 7 5 4 9 9 H 1.07995 * 120.00285 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99647 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99309 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00403 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47155 * 89.99621 * 12 10 8 14 14 H 1.48499 * 109.47035 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47075 * 329.99832 * 12 10 8 16 16 C 1.54917 * 101.58025 * 324.49587 * 5 4 2 17 17 N 1.47021 * 109.88339 * 121.09583 * 2 1 3 18 18 C 1.34779 * 125.64696 * 300.43824 * 17 2 1 19 19 O 1.21279 * 119.99872 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99740 * 180.02562 * 18 17 2 21 21 C 1.52998 * 109.46886 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.47113 * 179.97438 * 21 20 18 23 23 C 1.38222 * 119.98991 * 264.72295 * 22 21 20 24 24 C 1.38184 * 120.05462 * 179.76807 * 23 22 21 25 25 C 1.38507 * 120.02155 * 0.50788 * 24 23 22 26 26 F 1.35098 * 120.01150 * 179.76974 * 25 24 23 27 27 C 1.38394 * 119.97104 * 359.74534 * 25 24 23 28 28 C 1.38436 * 119.95348 * 0.02562 * 27 25 24 29 29 F 1.35108 * 120.01464 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.46431 * 300.35600 * 1 2 3 31 31 H 1.08994 * 109.47054 * 60.35721 * 1 2 3 32 32 H 1.09002 * 109.46744 * 180.36123 * 1 2 3 33 33 H 1.09000 * 110.72348 * 144.40514 * 4 2 1 34 34 H 1.09003 * 110.71705 * 21.13537 * 4 2 1 35 35 H 0.97001 * 120.00236 * 18.64768 * 7 5 4 36 36 H 0.97008 * 119.99074 * 179.97438 * 11 10 8 37 37 H 1.09002 * 110.36419 * 155.85111 * 16 5 4 38 38 H 1.09001 * 110.36569 * 278.17123 * 16 5 4 39 39 H 1.09001 * 109.46965 * 299.99561 * 20 18 17 40 40 H 1.09001 * 109.47132 * 60.00282 * 20 18 17 41 41 H 1.08997 * 109.47132 * 299.99795 * 21 20 18 42 42 H 1.09002 * 109.47331 * 59.99549 * 21 20 18 43 43 H 1.07999 * 119.97323 * 0.02562 * 23 22 21 44 44 H 1.08004 * 119.99622 * 180.25501 * 24 23 22 45 45 H 1.08002 * 120.01890 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 2.3520 -2.1694 -0.6924 6 1 1.4453 -2.7737 -0.6603 7 7 3.3937 -2.8312 -1.4816 8 6 3.5389 -4.1915 -1.4203 9 1 2.8857 -4.7765 -0.7899 10 6 4.5258 -4.8185 -2.1686 11 7 4.6656 -6.1260 -2.1093 12 14 5.6562 -3.8067 -3.2585 13 1 6.8538 -3.3953 -2.4828 14 1 6.0784 -4.6219 -4.4257 15 1 4.9350 -2.5986 -3.7333 16 6 2.8569 -1.8497 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.7754 -0.3844 2.4657 19 8 1.0786 0.5756 2.7180 20 6 2.3566 -1.2088 3.5854 21 6 1.9169 -0.6252 4.9296 22 6 2.4976 -1.4499 6.0493 23 6 1.7490 -2.4601 6.6233 24 6 2.2819 -3.2203 7.6469 25 6 3.5632 -2.9637 8.1060 26 9 4.0822 -3.7040 9.1098 27 6 4.3117 -1.9490 7.5355 28 6 3.7785 -1.1912 6.5069 29 9 4.5083 -0.2007 5.9488 30 1 -0.3632 0.5194 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0065 33 1 2.9657 -0.2831 -1.6183 34 1 1.2918 -0.7891 -2.0201 35 1 3.9807 -2.3058 -2.0476 36 1 5.3550 -6.5642 -2.6325 37 1 2.7090 -2.7080 1.3922 38 1 3.9093 -1.5666 0.7128 39 1 2.0018 -2.2360 3.5022 40 1 3.4446 -1.1937 3.5208 41 1 2.2713 0.4022 5.0131 42 1 0.8289 -0.6405 4.9940 43 1 0.7483 -2.6583 6.2688 44 1 1.6976 -4.0122 8.0920 45 1 5.3107 -1.7480 7.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989628596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:08 Heat of formation + Delta-G solvation = -92.767060 kcal Electronic energy + Delta-G solvation = -28815.918815 eV Core-core repulsion = 24469.324743 eV Total energy + Delta-G solvation = -4346.594072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.30236 -49.25020 -40.16849 -39.27584 -37.62414 -34.43085 -34.11584 -31.92510 -31.52134 -31.16651 -29.43919 -28.83998 -25.60872 -25.11275 -23.64795 -23.52487 -22.10778 -21.20186 -20.23292 -18.79626 -18.50881 -17.78543 -17.56873 -17.09564 -16.26891 -16.15125 -15.95569 -15.66379 -15.48703 -15.30087 -14.94211 -14.69379 -14.25357 -14.18617 -13.75374 -13.56920 -13.38905 -13.19737 -12.87190 -12.82846 -12.71609 -12.53047 -12.12894 -11.98673 -11.92942 -11.82667 -11.65934 -11.53938 -11.16745 -11.10730 -10.87598 -10.69842 -10.41842 -10.09897 -9.74430 -9.69631 -9.41224 -9.09780 -8.90190 -8.45250 -7.45134 -5.89658 -3.28064 0.59184 0.66130 2.75351 2.94687 3.16724 3.29295 3.31985 3.38400 3.54377 4.07986 4.22044 4.25945 4.47669 4.49225 4.65350 4.74908 4.88052 4.97689 5.01271 5.07304 5.13611 5.27644 5.41620 5.42619 5.45264 5.48208 5.51951 5.59368 5.61966 5.71549 5.72498 5.73643 5.84219 5.93768 5.98919 6.01317 6.07945 6.14238 6.30165 6.39388 6.42682 6.54664 6.69172 7.71753 7.84177 8.28324 8.29959 9.05381 9.77624 9.95454 11.27862 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.002904 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.394769 B = 9639.283775 C =11481.180737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.070 0.930 4 C -0.141 4.141 5 C 0.179 3.821 6 H 0.073 0.927 7 N -0.737 5.737 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.073 3.927 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.133 4.133 21 C -0.062 4.062 22 C -0.124 4.124 23 C -0.057 4.057 24 C -0.160 4.160 25 C 0.124 3.876 26 F -0.133 7.133 27 C -0.190 4.190 28 C 0.133 3.867 29 F -0.127 7.127 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.365 0.635 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 10.452 17.006 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.090 0.910 7 N -0.379 5.379 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.053 4.053 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.173 4.173 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.075 4.075 24 C -0.179 4.179 25 C 0.104 3.896 26 F -0.111 7.111 27 C -0.210 4.210 28 C 0.114 3.886 29 F -0.105 7.105 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.236 10.704 17.248 21.236 hybrid contribution 1.416 0.456 -0.703 1.645 sum -4.820 11.160 16.546 20.532 Atomic orbital electron populations 1.22132 0.94884 1.02382 1.02499 1.21468 0.94523 0.95877 0.84598 0.91217 1.23028 1.01734 0.96895 0.96280 1.21234 0.92494 0.91081 0.88444 0.90958 1.42669 1.37902 1.05288 1.52010 1.19052 1.14646 0.81217 1.23507 0.89004 1.24685 0.98893 0.95361 0.99666 1.69703 1.35840 1.07373 1.44557 0.86576 0.81473 0.79685 0.80936 1.20941 1.21595 1.20203 1.23434 0.94896 0.87347 0.99605 1.48644 1.50312 1.30774 1.04661 1.20189 0.80537 0.84862 0.82524 1.90653 1.39577 1.29345 1.83521 1.21627 1.02783 1.00598 0.92290 1.20270 1.01731 0.98561 0.89414 1.20076 0.93161 0.99323 0.99907 1.20857 1.00095 0.92635 0.93913 1.21236 0.94512 1.02577 0.99601 1.17310 0.92610 0.91660 0.87975 1.91535 1.86863 1.75046 1.57685 1.21034 1.02542 0.98063 0.99359 1.17175 0.89731 0.87890 0.93814 1.91547 1.76644 1.58524 1.83803 0.91364 0.92000 0.92346 0.90797 0.89882 0.80202 0.92861 0.90771 0.91227 0.88426 0.88786 0.89665 0.89332 0.83655 0.83887 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.06 37.16 0.34 -1.70 16 2 C 0.14 1.90 3.49 -66.95 -0.23 1.66 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -1.98 6.12 -24.90 -0.15 -2.13 16 5 C 0.18 3.07 3.68 -65.79 -0.24 2.83 16 6 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 7 N -0.74 -15.84 5.08 -51.35 -0.26 -16.10 16 8 C -0.25 -6.65 10.47 -15.05 -0.16 -6.81 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.83 13.97 55.49 0.78 -27.06 16 12 Si 0.88 20.92 27.74 -169.99 -4.71 16.20 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 16 C 0.07 1.13 6.38 -2.53 -0.02 1.12 16 17 N -0.61 -8.79 3.08 -163.01 -0.50 -9.29 16 18 C 0.53 7.56 7.63 -10.98 -0.08 7.48 16 19 O -0.55 -9.13 14.88 5.56 0.08 -9.05 16 20 C -0.13 -1.51 4.69 -27.88 -0.13 -1.65 16 21 C -0.06 -0.63 4.41 -27.88 -0.12 -0.76 16 22 C -0.12 -1.16 5.14 -104.55 -0.54 -1.70 16 23 C -0.06 -0.44 9.67 -39.61 -0.38 -0.82 16 24 C -0.16 -1.25 10.03 -39.50 -0.40 -1.64 16 25 C 0.12 1.13 7.30 -39.43 -0.29 0.85 16 26 F -0.13 -1.30 17.27 2.25 0.04 -1.27 16 27 C -0.19 -1.77 10.01 -39.45 -0.39 -2.17 16 28 C 0.13 1.36 7.24 -39.43 -0.29 1.07 16 29 F -0.13 -1.45 16.57 2.25 0.04 -1.41 16 30 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 34 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 35 H 0.36 7.73 5.57 -40.82 -0.23 7.51 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.13 7.48 -51.93 -0.39 0.75 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.01 7.85 -51.93 -0.41 0.60 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.09 0.85 8.01 -51.93 -0.42 0.44 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -30.74 378.74 -8.43 -39.17 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.41 Total: 7.26 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.18 Total: -4.17 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.01 Total: -52.45 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.74 -8.43 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.595 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds