Wall clock time and date at job start Tue Mar 31 2020 21:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99581 * 2 1 4 4 C 1.54326 * 109.88412 * 238.90429 * 2 1 3 5 5 C 1.55151 * 102.94313 * 262.77524 * 4 2 1 6 6 H 1.09004 * 111.00792 * 82.56822 * 5 4 2 7 7 N 1.46491 * 111.00691 * 206.42272 * 5 4 2 8 8 C 1.36941 * 120.00145 * 198.64845 * 7 5 4 9 9 H 1.07995 * 120.00285 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99647 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99309 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00403 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47155 * 89.99621 * 12 10 8 14 14 H 1.48499 * 109.47035 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47075 * 329.99832 * 12 10 8 16 16 C 1.54917 * 101.58025 * 324.49587 * 5 4 2 17 17 N 1.47021 * 109.88339 * 121.09583 * 2 1 3 18 18 C 1.34779 * 125.64696 * 300.43824 * 17 2 1 19 19 O 1.21279 * 119.99872 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99740 * 180.02562 * 18 17 2 21 21 C 1.52998 * 109.46886 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.47113 * 179.97438 * 21 20 18 23 23 C 1.38222 * 119.98991 * 264.72295 * 22 21 20 24 24 C 1.38184 * 120.05462 * 179.76807 * 23 22 21 25 25 C 1.38507 * 120.02155 * 0.50788 * 24 23 22 26 26 F 1.35098 * 120.01150 * 179.76974 * 25 24 23 27 27 C 1.38394 * 119.97104 * 359.74534 * 25 24 23 28 28 C 1.38436 * 119.95348 * 0.02562 * 27 25 24 29 29 F 1.35108 * 120.01464 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.46431 * 300.35600 * 1 2 3 31 31 H 1.08994 * 109.47054 * 60.35721 * 1 2 3 32 32 H 1.09002 * 109.46744 * 180.36123 * 1 2 3 33 33 H 1.09000 * 110.72348 * 144.40514 * 4 2 1 34 34 H 1.09003 * 110.71705 * 21.13537 * 4 2 1 35 35 H 0.97001 * 120.00236 * 18.64768 * 7 5 4 36 36 H 0.97008 * 119.99074 * 179.97438 * 11 10 8 37 37 H 1.09002 * 110.36419 * 155.85111 * 16 5 4 38 38 H 1.09001 * 110.36569 * 278.17123 * 16 5 4 39 39 H 1.09001 * 109.46965 * 299.99561 * 20 18 17 40 40 H 1.09001 * 109.47132 * 60.00282 * 20 18 17 41 41 H 1.08997 * 109.47132 * 299.99795 * 21 20 18 42 42 H 1.09002 * 109.47331 * 59.99549 * 21 20 18 43 43 H 1.07999 * 119.97323 * 0.02562 * 23 22 21 44 44 H 1.08004 * 119.99622 * 180.25501 * 24 23 22 45 45 H 1.08002 * 120.01890 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 2.3520 -2.1694 -0.6924 6 1 1.4453 -2.7737 -0.6603 7 7 3.3937 -2.8312 -1.4816 8 6 3.5389 -4.1915 -1.4203 9 1 2.8857 -4.7765 -0.7899 10 6 4.5258 -4.8185 -2.1686 11 7 4.6656 -6.1260 -2.1093 12 14 5.6562 -3.8067 -3.2585 13 1 6.8538 -3.3953 -2.4828 14 1 6.0784 -4.6219 -4.4257 15 1 4.9350 -2.5986 -3.7333 16 6 2.8569 -1.8497 0.7368 17 7 2.0301 -0.7141 1.1839 18 6 1.7754 -0.3844 2.4657 19 8 1.0786 0.5756 2.7180 20 6 2.3566 -1.2088 3.5854 21 6 1.9169 -0.6252 4.9296 22 6 2.4976 -1.4499 6.0493 23 6 1.7490 -2.4601 6.6233 24 6 2.2819 -3.2203 7.6469 25 6 3.5632 -2.9637 8.1060 26 9 4.0822 -3.7040 9.1098 27 6 4.3117 -1.9490 7.5355 28 6 3.7785 -1.1912 6.5069 29 9 4.5083 -0.2007 5.9488 30 1 -0.3632 0.5194 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0065 33 1 2.9657 -0.2831 -1.6183 34 1 1.2918 -0.7891 -2.0201 35 1 3.9807 -2.3058 -2.0476 36 1 5.3550 -6.5642 -2.6325 37 1 2.7090 -2.7080 1.3922 38 1 3.9093 -1.5666 0.7128 39 1 2.0018 -2.2360 3.5022 40 1 3.4446 -1.1937 3.5208 41 1 2.2713 0.4022 5.0131 42 1 0.8289 -0.6405 4.9940 43 1 0.7483 -2.6583 6.2688 44 1 1.6976 -4.0122 8.0920 45 1 5.3107 -1.7480 7.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989628596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:07 Heat of formation + Delta-G solvation = -109.220245 kcal Electronic energy + Delta-G solvation = -28816.632279 eV Core-core repulsion = 24469.324743 eV Total energy + Delta-G solvation = -4347.307535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.06686 -50.02536 -41.31901 -40.01985 -38.86326 -36.09239 -35.02768 -33.51142 -32.89409 -31.84725 -30.44149 -30.20394 -26.76564 -26.10379 -25.31922 -24.21788 -23.15836 -22.26609 -21.53448 -20.01711 -19.60574 -19.23995 -18.31268 -18.22271 -17.18958 -17.08312 -16.88458 -16.70425 -16.43875 -16.30498 -16.13980 -15.77893 -15.45249 -15.26239 -14.90007 -14.74130 -14.61118 -14.39067 -14.30309 -13.93370 -13.67591 -13.58769 -13.32863 -13.18174 -13.06784 -12.86086 -12.70040 -12.61129 -12.42267 -12.24542 -12.11658 -12.01142 -11.90613 -11.79720 -11.45281 -11.06937 -10.80094 -10.09352 -9.69099 -9.63915 -9.32718 -8.00381 -5.35806 -0.11932 -0.01003 1.42157 1.44355 1.51633 1.61660 1.96429 2.34100 2.50787 2.83634 3.24170 3.29967 3.39151 3.57066 3.57972 3.75633 3.84811 3.86930 3.94060 4.03756 4.09128 4.13348 4.23471 4.35286 4.42752 4.47167 4.55947 4.66490 4.72115 4.80162 4.83304 4.89081 4.91478 4.92016 5.02659 5.05050 5.10341 5.14776 5.24344 5.27995 5.34529 5.48229 5.74442 5.79488 6.23019 6.54485 7.08144 7.15125 7.82497 8.01152 9.20339 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.002904 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.394769 B = 9639.283775 C =11481.180737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.170 3.830 6 H 0.064 0.936 7 N -0.739 5.739 8 C -0.232 4.232 9 H 0.063 0.937 10 C -0.058 4.058 11 N -0.981 5.981 12 Si 0.949 3.051 13 H -0.281 1.281 14 H -0.301 1.301 15 H -0.247 1.247 16 C 0.085 3.915 17 N -0.611 5.611 18 C 0.528 3.472 19 O -0.574 6.574 20 C -0.129 4.129 21 C -0.054 4.054 22 C -0.128 4.128 23 C -0.052 4.052 24 C -0.153 4.153 25 C 0.112 3.888 26 F -0.138 7.138 27 C -0.195 4.195 28 C 0.114 3.886 29 F -0.139 7.139 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 11.764 17.007 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.092 0.908 4 C -0.166 4.166 5 C 0.060 3.940 6 H 0.082 0.918 7 N -0.382 5.382 8 C -0.362 4.362 9 H 0.081 0.919 10 C -0.250 4.250 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.228 1.228 15 H -0.171 1.171 16 C -0.041 4.041 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.455 6.455 20 C -0.168 4.168 21 C -0.092 4.092 22 C -0.129 4.129 23 C -0.070 4.070 24 C -0.172 4.172 25 C 0.093 3.907 26 F -0.117 7.117 27 C -0.215 4.215 28 C 0.095 3.905 29 F -0.118 7.118 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.189 0.811 44 H 0.185 0.815 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.046 12.080 17.271 22.223 hybrid contribution 1.551 0.053 -0.603 1.665 sum -5.494 12.133 16.668 21.336 Atomic orbital electron populations 1.22067 0.93984 1.02195 1.02895 1.21569 0.95230 0.95899 0.84035 0.90799 1.22964 1.02618 0.94320 0.96744 1.21385 0.91007 0.92506 0.89073 0.91753 1.42608 1.39062 1.03628 1.52860 1.19012 1.12829 0.83107 1.21296 0.91907 1.25450 1.01191 0.96337 1.02037 1.69879 1.37201 1.09512 1.46495 0.85503 0.79461 0.78871 0.78514 1.20699 1.22768 1.17145 1.23116 0.94702 0.87816 0.98478 1.48673 1.50165 1.30416 1.05171 1.20638 0.80033 0.84694 0.82829 1.90644 1.40641 1.30406 1.83768 1.21641 1.02514 1.00805 0.91854 1.20162 1.02103 0.97830 0.89077 1.20087 0.93029 0.99848 0.99904 1.21150 1.00909 0.91570 0.93324 1.21534 0.93947 1.02663 0.99015 1.17501 0.93303 0.91774 0.88125 1.91521 1.87054 1.75162 1.57959 1.21139 1.03068 0.98079 0.99200 1.17373 0.90249 0.88263 0.94616 1.91510 1.77032 1.59142 1.84107 0.92757 0.89841 0.92741 0.90047 0.88345 0.79698 0.93399 0.90765 0.91623 0.87117 0.88911 0.91134 0.88558 0.81075 0.81508 0.82732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.06 71.98 0.65 -2.89 16 2 C 0.14 3.40 3.49 45.34 0.16 3.56 16 3 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.13 -3.25 6.12 31.78 0.19 -3.05 16 5 C 0.17 5.56 3.68 46.39 0.17 5.73 16 6 H 0.06 2.23 8.13 -2.38 -0.02 2.21 16 7 N -0.74 -30.59 5.08 -316.38 -1.61 -32.20 16 8 C -0.23 -12.09 10.47 84.03 0.88 -11.21 16 9 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 10 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 11 N -0.98 -60.12 13.97 21.65 0.30 -59.82 16 12 Si 0.95 42.73 27.74 68.60 1.90 44.64 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 15 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 16 C 0.08 2.51 6.38 86.86 0.55 3.06 16 17 N -0.61 -16.62 3.08 -788.03 -2.43 -19.05 16 18 C 0.53 14.41 7.63 87.66 0.67 15.08 16 19 O -0.57 -18.38 14.88 -3.03 -0.05 -18.42 16 20 C -0.13 -2.77 4.69 29.85 0.14 -2.63 16 21 C -0.05 -1.05 4.41 29.85 0.13 -0.92 16 22 C -0.13 -2.24 5.14 -19.82 -0.10 -2.34 16 23 C -0.05 -0.68 9.67 22.25 0.22 -0.47 16 24 C -0.15 -2.04 10.03 22.32 0.22 -1.81 16 25 C 0.11 1.92 7.30 22.37 0.16 2.09 16 26 F -0.14 -2.58 17.27 44.97 0.78 -1.81 16 27 C -0.20 -3.54 10.01 22.35 0.22 -3.32 16 28 C 0.11 2.29 7.24 22.37 0.16 2.45 16 29 F -0.14 -3.22 16.57 44.97 0.75 -2.47 16 30 H 0.05 1.42 6.74 -2.39 -0.02 1.41 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.99 8.00 -2.39 -0.02 1.97 16 34 H 0.10 2.22 7.83 -2.39 -0.02 2.21 16 35 H 0.37 14.66 5.57 -92.71 -0.52 14.15 16 36 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 37 H 0.07 2.19 7.48 -2.39 -0.02 2.18 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.11 2.10 7.85 -2.39 -0.02 2.08 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.58 7.75 -2.39 -0.02 1.56 16 42 H 0.10 1.70 8.01 -2.39 -0.02 1.68 16 43 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 45 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.65 378.74 4.99 -61.66 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.44 Total: 26.90 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 4.90 Total: 0.56 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -3.73 Total: -111.07 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.42 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 1.52 Total: -4.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.64 kcal Total: -66.65 4.99 -61.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.555 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds