Wall clock time and date at job start Tue Mar 31 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87581 * 2 1 4 4 C 1.54321 * 109.88133 * 121.02081 * 2 1 3 5 5 C 1.55157 * 102.94629 * 97.37826 * 4 2 1 6 6 H 1.09000 * 111.00234 * 277.38689 * 5 4 2 7 7 N 1.46496 * 111.00611 * 153.57798 * 5 4 2 8 8 C 1.36935 * 120.00221 * 154.99759 * 7 5 4 9 9 H 1.08001 * 120.00176 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00382 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54903 * 101.58140 * 35.49926 * 5 4 2 17 17 N 1.47027 * 110.01073 * 238.89917 * 2 1 3 18 18 C 1.34776 * 125.64483 * 59.49914 * 17 2 1 19 19 O 1.21280 * 119.99905 * 0.02562 * 18 17 2 20 20 C 1.50700 * 120.00169 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.47259 * 180.02562 * 20 18 17 22 22 C 1.50696 * 109.46814 * 180.02562 * 21 20 18 23 23 C 1.38231 * 119.98707 * 264.72134 * 22 21 20 24 24 C 1.38188 * 120.04927 * 179.76877 * 23 22 21 25 25 C 1.38497 * 120.02558 * 0.51029 * 24 23 22 26 26 F 1.35104 * 120.00984 * 179.72207 * 25 24 23 27 27 C 1.38395 * 119.97331 * 359.74309 * 25 24 23 28 28 C 1.38437 * 119.95040 * 0.02562 * 27 25 24 29 29 F 1.35102 * 120.01276 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.46644 * 298.98532 * 1 2 3 31 31 H 1.08998 * 109.46333 * 58.98144 * 1 2 3 32 32 H 1.09004 * 109.47007 * 178.98303 * 1 2 3 33 33 H 1.09007 * 110.72008 * 339.00842 * 4 2 1 34 34 H 1.09002 * 110.72194 * 215.74095 * 4 2 1 35 35 H 0.97000 * 120.00132 * 334.99425 * 7 5 4 36 36 H 0.97000 * 119.99717 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36589 * 81.83362 * 16 5 4 38 38 H 1.09000 * 110.36559 * 204.15297 * 16 5 4 39 39 H 1.09003 * 109.47061 * 300.00522 * 20 18 17 40 40 H 1.08999 * 109.46657 * 59.99976 * 20 18 17 41 41 H 1.08999 * 109.46897 * 299.99712 * 21 20 18 42 42 H 1.08992 * 109.47306 * 60.00477 * 21 20 18 43 43 H 1.07996 * 119.97356 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.98742 * 180.22743 * 24 23 22 45 45 H 1.08004 * 120.02396 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 6 2.3557 -2.1675 0.6944 6 1 1.4505 -2.7738 0.6621 7 7 3.3978 -2.8266 1.4853 8 6 3.4638 -4.1937 1.5272 9 1 2.7478 -4.7861 0.9769 10 6 4.4516 -4.8184 2.2762 11 7 4.5154 -6.1324 2.3161 12 14 5.6914 -3.7939 3.2265 13 1 5.1714 -3.5288 4.5920 14 1 6.9759 -4.5331 3.3209 15 1 5.9123 -2.5054 2.5221 16 6 2.8618 -1.8473 -0.7342 17 7 2.0332 -0.7136 -1.1829 18 6 1.7796 -0.3850 -2.4652 19 8 1.0819 0.5740 -2.7188 20 6 2.3639 -1.2086 -3.5838 21 6 1.9259 -0.6257 -4.9289 22 6 2.5098 -1.4497 -6.0474 23 6 3.6943 -1.0623 -6.6453 24 6 4.2333 -1.8196 -7.6679 25 6 3.5817 -2.9620 -8.1019 26 9 4.1061 -3.6990 -9.1055 27 6 2.3929 -3.3479 -7.5076 28 6 1.8563 -2.5912 -6.4800 29 9 0.6957 -2.9665 -5.8992 30 1 -0.3632 0.4980 0.8990 31 1 -0.3632 0.5296 -0.8807 32 1 -0.3633 -1.0275 -0.0182 33 1 1.2908 -0.7886 2.0201 34 1 2.9642 -0.2794 1.6202 35 1 4.0412 -2.2947 1.9793 36 1 5.2054 -6.5688 2.8398 37 1 3.9135 -1.5620 -0.7090 38 1 2.7164 -2.7062 -1.3894 39 1 3.4518 -1.1914 -3.5177 40 1 2.0111 -2.2366 -3.5006 41 1 0.8381 -0.6427 -4.9952 42 1 2.2791 0.4020 -5.0118 43 1 4.2010 -0.1694 -6.3102 44 1 5.1608 -1.5179 -8.1318 45 1 1.8843 -4.2389 -7.8451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989628597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:11 Heat of formation + Delta-G solvation = -92.876919 kcal Electronic energy + Delta-G solvation = -28817.853801 eV Core-core repulsion = 24471.254966 eV Total energy + Delta-G solvation = -4346.598836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.30894 -49.24221 -40.16955 -39.28294 -37.62364 -34.43327 -34.12417 -31.92265 -31.52512 -31.17451 -29.44694 -28.84456 -25.60176 -25.11745 -23.63437 -23.52836 -22.11566 -21.21747 -20.24673 -18.78507 -18.51158 -17.81546 -17.57420 -17.10452 -16.27138 -16.20456 -15.85123 -15.66154 -15.52550 -15.34118 -14.95997 -14.65667 -14.28118 -14.10033 -13.76337 -13.68342 -13.37818 -13.06151 -12.91732 -12.84558 -12.70600 -12.52753 -12.14850 -12.02833 -11.85214 -11.82659 -11.68514 -11.54175 -11.18225 -11.13428 -10.87841 -10.69703 -10.41304 -10.10566 -9.74875 -9.69006 -9.41886 -9.10242 -8.90971 -8.45868 -7.45456 -5.89463 -3.28006 0.58338 0.65309 2.74649 2.93902 3.16229 3.28470 3.31473 3.37968 3.54006 4.07399 4.21097 4.25388 4.47356 4.48158 4.65481 4.74056 4.87329 4.97575 5.00722 5.08840 5.12996 5.27388 5.41071 5.41531 5.47290 5.47923 5.51765 5.58435 5.61188 5.70589 5.72608 5.73526 5.84191 5.92972 5.98061 6.01865 6.07194 6.14615 6.31216 6.40691 6.42044 6.54411 6.68514 7.71255 7.84489 8.28117 8.29679 9.05347 9.77394 9.95236 11.28064 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.002889 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.809313 B = 9690.153338 C =11513.768813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.142 4.142 5 C 0.179 3.821 6 H 0.077 0.923 7 N -0.736 5.736 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.133 4.133 21 C -0.062 4.062 22 C -0.124 4.124 23 C -0.058 4.058 24 C -0.161 4.161 25 C 0.124 3.876 26 F -0.133 7.133 27 C -0.190 4.190 28 C 0.135 3.865 29 F -0.126 7.126 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 12.006 -17.622 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.054 4.054 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.173 4.173 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.076 4.076 24 C -0.180 4.180 25 C 0.105 3.895 26 F -0.111 7.111 27 C -0.210 4.210 28 C 0.115 3.885 29 F -0.104 7.104 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.693 12.192 -17.843 21.924 hybrid contribution 1.026 0.136 0.601 1.197 sum -2.667 12.328 -17.242 21.363 Atomic orbital electron populations 1.22134 0.94889 1.02445 1.02458 1.21468 0.94522 0.95837 0.84640 0.91266 1.23074 1.01698 0.97099 0.96246 1.21245 0.92615 0.91207 0.88229 0.90538 1.42669 1.34004 1.04457 1.56556 1.19074 1.12821 0.80525 1.26048 0.88986 1.24685 0.98751 0.95306 0.99870 1.69697 1.36072 1.07007 1.44682 0.86575 0.81800 0.79701 0.80546 1.20916 1.21610 1.20260 1.23443 0.94771 0.87450 0.99744 1.48635 1.50180 1.30884 1.04668 1.20188 0.80594 0.84833 0.82520 1.90654 1.39481 1.29453 1.83479 1.21626 1.02646 1.00706 0.92316 1.20268 1.01872 0.98422 0.89417 1.20077 0.96634 0.95837 0.99950 1.20845 0.93589 0.99294 0.93849 1.21222 1.01973 0.95017 0.99808 1.17308 0.92951 0.91332 0.87956 1.91537 1.85908 1.75980 1.57707 1.21050 0.97523 1.03215 0.99164 1.17178 0.83530 0.94282 0.93508 1.91553 1.45273 1.90777 1.82797 0.91972 0.91402 0.92334 0.89855 0.90868 0.80234 0.92850 0.91329 0.90779 0.88613 0.88632 0.89596 0.89388 0.83735 0.83944 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.06 37.16 0.34 -1.75 16 2 C 0.14 1.90 3.49 -66.95 -0.23 1.67 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.01 6.14 -24.90 -0.15 -2.16 16 5 C 0.18 3.09 3.71 -65.79 -0.24 2.84 16 6 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 7 N -0.74 -15.81 5.05 -51.36 -0.26 -16.07 16 8 C -0.26 -6.69 10.44 -15.06 -0.16 -6.85 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.90 13.97 55.49 0.78 -27.12 16 12 Si 0.88 20.86 27.73 -169.99 -4.71 16.15 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 16 C 0.07 1.11 6.38 -2.53 -0.02 1.09 16 17 N -0.61 -8.77 3.08 -163.02 -0.50 -9.27 16 18 C 0.53 7.54 7.63 -10.99 -0.08 7.45 16 19 O -0.55 -9.11 14.90 5.56 0.08 -9.03 16 20 C -0.13 -1.50 4.69 -27.88 -0.13 -1.63 16 21 C -0.06 -0.63 4.41 -27.89 -0.12 -0.75 16 22 C -0.12 -1.15 5.14 -104.55 -0.54 -1.69 16 23 C -0.06 -0.44 9.67 -39.60 -0.38 -0.82 16 24 C -0.16 -1.23 10.03 -39.50 -0.40 -1.62 16 25 C 0.12 1.12 7.30 -39.43 -0.29 0.84 16 26 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 27 C -0.19 -1.77 10.01 -39.45 -0.39 -2.16 16 28 C 0.13 1.37 7.24 -39.43 -0.29 1.09 16 29 F -0.13 -1.45 16.56 2.25 0.04 -1.41 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 34 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 35 H 0.36 7.70 5.63 -40.82 -0.23 7.47 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 41 H 0.09 0.97 7.75 -51.93 -0.40 0.57 16 42 H 0.09 0.84 8.01 -51.93 -0.42 0.42 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 45 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -30.81 378.79 -8.43 -39.24 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.41 Total: 7.34 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.19 Total: -4.27 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.01 Total: -52.46 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.81 -8.43 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.641 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds