Wall clock time and date at job start Tue Mar 31 2020 21:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87581 * 2 1 4 4 C 1.54321 * 109.88133 * 121.02081 * 2 1 3 5 5 C 1.55157 * 102.94629 * 97.37826 * 4 2 1 6 6 H 1.09000 * 111.00234 * 277.38689 * 5 4 2 7 7 N 1.46496 * 111.00611 * 153.57798 * 5 4 2 8 8 C 1.36935 * 120.00221 * 154.99759 * 7 5 4 9 9 H 1.08001 * 120.00176 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00382 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99684 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 90.00337 * 12 10 8 14 14 H 1.48503 * 109.47399 * 209.99827 * 12 10 8 15 15 H 1.48498 * 109.47295 * 330.00433 * 12 10 8 16 16 C 1.54903 * 101.58140 * 35.49926 * 5 4 2 17 17 N 1.47027 * 110.01073 * 238.89917 * 2 1 3 18 18 C 1.34776 * 125.64483 * 59.49914 * 17 2 1 19 19 O 1.21280 * 119.99905 * 0.02562 * 18 17 2 20 20 C 1.50700 * 120.00169 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.47259 * 180.02562 * 20 18 17 22 22 C 1.50696 * 109.46814 * 180.02562 * 21 20 18 23 23 C 1.38231 * 119.98707 * 264.72134 * 22 21 20 24 24 C 1.38188 * 120.04927 * 179.76877 * 23 22 21 25 25 C 1.38497 * 120.02558 * 0.51029 * 24 23 22 26 26 F 1.35104 * 120.00984 * 179.72207 * 25 24 23 27 27 C 1.38395 * 119.97331 * 359.74309 * 25 24 23 28 28 C 1.38437 * 119.95040 * 0.02562 * 27 25 24 29 29 F 1.35102 * 120.01276 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.46644 * 298.98532 * 1 2 3 31 31 H 1.08998 * 109.46333 * 58.98144 * 1 2 3 32 32 H 1.09004 * 109.47007 * 178.98303 * 1 2 3 33 33 H 1.09007 * 110.72008 * 339.00842 * 4 2 1 34 34 H 1.09002 * 110.72194 * 215.74095 * 4 2 1 35 35 H 0.97000 * 120.00132 * 334.99425 * 7 5 4 36 36 H 0.97000 * 119.99717 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36589 * 81.83362 * 16 5 4 38 38 H 1.09000 * 110.36559 * 204.15297 * 16 5 4 39 39 H 1.09003 * 109.47061 * 300.00522 * 20 18 17 40 40 H 1.08999 * 109.46657 * 59.99976 * 20 18 17 41 41 H 1.08999 * 109.46897 * 299.99712 * 21 20 18 42 42 H 1.08992 * 109.47306 * 60.00477 * 21 20 18 43 43 H 1.07996 * 119.97356 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.98742 * 180.22743 * 24 23 22 45 45 H 1.08004 * 120.02396 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 6 2.3557 -2.1675 0.6944 6 1 1.4505 -2.7738 0.6621 7 7 3.3978 -2.8266 1.4853 8 6 3.4638 -4.1937 1.5272 9 1 2.7478 -4.7861 0.9769 10 6 4.4516 -4.8184 2.2762 11 7 4.5154 -6.1324 2.3161 12 14 5.6914 -3.7939 3.2265 13 1 5.1714 -3.5288 4.5920 14 1 6.9759 -4.5331 3.3209 15 1 5.9123 -2.5054 2.5221 16 6 2.8618 -1.8473 -0.7342 17 7 2.0332 -0.7136 -1.1829 18 6 1.7796 -0.3850 -2.4652 19 8 1.0819 0.5740 -2.7188 20 6 2.3639 -1.2086 -3.5838 21 6 1.9259 -0.6257 -4.9289 22 6 2.5098 -1.4497 -6.0474 23 6 3.6943 -1.0623 -6.6453 24 6 4.2333 -1.8196 -7.6679 25 6 3.5817 -2.9620 -8.1019 26 9 4.1061 -3.6990 -9.1055 27 6 2.3929 -3.3479 -7.5076 28 6 1.8563 -2.5912 -6.4800 29 9 0.6957 -2.9665 -5.8992 30 1 -0.3632 0.4980 0.8990 31 1 -0.3632 0.5296 -0.8807 32 1 -0.3633 -1.0275 -0.0182 33 1 1.2908 -0.7886 2.0201 34 1 2.9642 -0.2794 1.6202 35 1 4.0412 -2.2947 1.9793 36 1 5.2054 -6.5688 2.8398 37 1 3.9135 -1.5620 -0.7090 38 1 2.7164 -2.7062 -1.3894 39 1 3.4518 -1.1914 -3.5177 40 1 2.0111 -2.2366 -3.5006 41 1 0.8381 -0.6427 -4.9952 42 1 2.2791 0.4020 -5.0118 43 1 4.2010 -0.1694 -6.3102 44 1 5.1608 -1.5179 -8.1318 45 1 1.8843 -4.2389 -7.8451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989628597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:10 Heat of formation + Delta-G solvation = -109.513413 kcal Electronic energy + Delta-G solvation = -28818.575214 eV Core-core repulsion = 24471.254966 eV Total energy + Delta-G solvation = -4347.320248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.06773 -50.02392 -41.31641 -40.01906 -38.86200 -36.09894 -35.02766 -33.51765 -32.90016 -31.84629 -30.45646 -30.20298 -26.76762 -26.10090 -25.31190 -24.21733 -23.16921 -22.28194 -21.54424 -19.98103 -19.66063 -19.23895 -18.32098 -18.21131 -17.21311 -17.08317 -16.85785 -16.63363 -16.51030 -16.32313 -16.15505 -15.75453 -15.42684 -15.26776 -14.84598 -14.77658 -14.59122 -14.47563 -14.21775 -13.92643 -13.70610 -13.57013 -13.34276 -13.17421 -13.09450 -12.85777 -12.69233 -12.62064 -12.41759 -12.31508 -12.06929 -12.00987 -11.91534 -11.81254 -11.45119 -11.06586 -10.80659 -10.09250 -9.69226 -9.63933 -9.32972 -8.00637 -5.36593 -0.11840 -0.00947 1.42174 1.45494 1.52543 1.61564 1.96482 2.34194 2.50884 2.83985 3.24135 3.29465 3.39432 3.57274 3.58082 3.76248 3.85669 3.87539 3.93239 4.05045 4.06926 4.14128 4.23780 4.34246 4.42038 4.46806 4.55928 4.66590 4.71089 4.81145 4.81939 4.89847 4.90334 4.92218 5.02223 5.05018 5.10324 5.15441 5.22588 5.27762 5.34043 5.47451 5.74611 5.78514 6.22499 6.54562 7.07738 7.15179 7.81390 8.01125 9.20256 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.002889 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.809313 B = 9690.153338 C =11513.768813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.169 3.831 6 H 0.062 0.938 7 N -0.737 5.737 8 C -0.234 4.234 9 H 0.059 0.941 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.953 3.047 13 H -0.280 1.280 14 H -0.300 1.300 15 H -0.245 1.245 16 C 0.084 3.916 17 N -0.611 5.611 18 C 0.528 3.472 19 O -0.574 6.574 20 C -0.128 4.128 21 C -0.054 4.054 22 C -0.128 4.128 23 C -0.051 4.051 24 C -0.152 4.152 25 C 0.112 3.888 26 F -0.139 7.139 27 C -0.196 4.196 28 C 0.113 3.887 29 F -0.140 7.140 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.370 0.630 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 14.752 -17.804 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.097 0.903 4 C -0.167 4.167 5 C 0.058 3.942 6 H 0.080 0.920 7 N -0.379 5.379 8 C -0.365 4.365 9 H 0.077 0.923 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.780 3.220 13 H -0.206 1.206 14 H -0.227 1.227 15 H -0.170 1.170 16 C -0.041 4.041 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.455 6.455 20 C -0.168 4.168 21 C -0.092 4.092 22 C -0.129 4.129 23 C -0.068 4.068 24 C -0.171 4.171 25 C 0.093 3.907 26 F -0.117 7.117 27 C -0.216 4.216 28 C 0.094 3.906 29 F -0.119 7.119 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.191 0.809 44 H 0.186 0.814 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.369 15.000 -18.054 23.592 hybrid contribution 0.492 -0.715 0.569 1.038 sum -1.877 14.285 -17.485 22.656 Atomic orbital electron populations 1.22081 0.94425 1.01917 1.02886 1.21564 0.94895 0.96113 0.84081 0.90332 1.22998 1.02666 0.94425 0.96653 1.21385 0.91003 0.92628 0.89135 0.92016 1.42564 1.35195 1.02670 1.57474 1.19005 1.11046 0.82537 1.23928 0.92333 1.25490 1.01438 0.96359 1.01822 1.69885 1.37404 1.09276 1.46639 0.85449 0.78319 0.79059 0.79148 1.20589 1.22726 1.16966 1.23116 0.94962 0.87808 0.98244 1.48666 1.50086 1.30509 1.05165 1.20646 0.80078 0.84667 0.82823 1.90646 1.40469 1.30626 1.83729 1.21644 1.03502 0.99820 0.91835 1.20162 1.00896 0.99021 0.89108 1.20092 0.97346 0.95456 0.99969 1.21157 0.92657 0.99889 0.93118 1.21535 1.02443 0.93904 0.99196 1.17505 0.93108 0.92003 0.88086 1.91523 1.85940 1.76268 1.57981 1.21146 0.97906 1.03466 0.99084 1.17408 0.83605 0.95250 0.94370 1.91512 1.46183 1.91045 1.83162 0.89739 0.92851 0.93226 0.88629 0.89695 0.79569 0.93349 0.90871 0.91185 0.86822 0.89140 0.91325 0.88389 0.80884 0.81384 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.06 71.98 0.65 -3.09 16 2 C 0.14 3.42 3.49 45.34 0.16 3.57 16 3 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.13 -3.28 6.14 31.78 0.20 -3.08 16 5 C 0.17 5.59 3.71 46.38 0.17 5.76 16 6 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 7 N -0.74 -30.56 5.05 -316.39 -1.60 -32.15 16 8 C -0.23 -12.36 10.44 84.03 0.88 -11.48 16 9 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 10 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 11 N -0.98 -60.56 13.97 21.65 0.30 -60.26 16 12 Si 0.95 42.49 27.73 68.60 1.90 44.40 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.25 -9.56 6.52 99.48 0.65 -8.91 16 16 C 0.08 2.47 6.38 86.85 0.55 3.03 16 17 N -0.61 -16.52 3.08 -788.07 -2.43 -18.95 16 18 C 0.53 14.31 7.63 87.66 0.67 14.98 16 19 O -0.57 -18.33 14.90 -3.03 -0.05 -18.37 16 20 C -0.13 -2.73 4.69 29.85 0.14 -2.59 16 21 C -0.05 -1.04 4.41 29.85 0.13 -0.91 16 22 C -0.13 -2.21 5.14 -19.82 -0.10 -2.31 16 23 C -0.05 -0.62 9.67 22.26 0.22 -0.41 16 24 C -0.15 -1.92 10.03 22.32 0.22 -1.70 16 25 C 0.11 1.90 7.30 22.37 0.16 2.06 16 26 F -0.14 -2.56 17.27 44.97 0.78 -1.78 16 27 C -0.20 -3.61 10.01 22.35 0.22 -3.39 16 28 C 0.11 2.30 7.24 22.37 0.16 2.46 16 29 F -0.14 -3.37 16.56 44.97 0.74 -2.62 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.46 6.77 -2.39 -0.02 1.44 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.10 2.22 7.83 -2.38 -0.02 2.21 16 34 H 0.08 2.02 8.00 -2.39 -0.02 2.00 16 35 H 0.37 14.56 5.63 -92.71 -0.52 14.03 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 2.11 7.48 -2.39 -0.02 2.09 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 2.04 7.85 -2.39 -0.02 2.02 16 41 H 0.07 1.55 7.75 -2.39 -0.02 1.54 16 42 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 43 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -67.59 378.79 4.99 -62.60 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.43 Total: 27.07 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.90 Total: 0.07 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -3.72 Total: -111.36 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 1.52 Total: -4.40 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.90 Total: 44.40 kcal Total: -67.59 4.99 -62.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.913 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds