Wall clock time and date at job start Tue Mar 31 2020 21:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.00321 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95830 * 2 1 3 5 5 C 1.55156 * 103.02551 * 218.66920 * 4 2 1 6 6 H 1.09001 * 111.00218 * 277.24015 * 5 4 2 7 7 N 1.46494 * 111.00563 * 153.38064 * 5 4 2 8 8 C 1.36944 * 119.99814 * 161.35300 * 7 5 4 9 9 H 1.08006 * 119.99600 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99949 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99912 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47323 * 90.00024 * 12 10 8 14 14 H 1.48502 * 109.46982 * 209.99850 * 12 10 8 15 15 H 1.48502 * 109.47092 * 329.99487 * 12 10 8 16 16 C 1.54911 * 101.57846 * 35.30562 * 5 4 2 17 17 N 1.47028 * 109.87931 * 121.09976 * 2 1 3 18 18 C 1.34777 * 125.64354 * 298.38503 * 17 2 1 19 19 O 1.21283 * 120.00463 * 359.72563 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.44686 * 18 17 2 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 17 22 22 C 1.50700 * 109.47208 * 180.02562 * 21 20 18 23 23 C 1.38226 * 119.98926 * 100.00038 * 22 21 20 24 24 C 1.38182 * 120.05330 * 180.02562 * 23 22 21 25 25 C 1.38498 * 120.02212 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.01015 * 179.97438 * 25 24 23 27 27 C 1.38392 * 119.97563 * 0.02562 * 25 24 23 28 28 C 1.38440 * 119.95171 * 359.75661 * 27 25 24 29 29 F 1.35097 * 120.01708 * 180.22677 * 28 27 25 30 30 H 1.09004 * 109.46854 * 300.35671 * 1 2 3 31 31 H 1.08997 * 109.46778 * 60.35445 * 1 2 3 32 32 H 1.08997 * 109.47185 * 180.35990 * 1 2 3 33 33 H 1.08994 * 110.84853 * 100.19898 * 4 2 1 34 34 H 1.09001 * 110.51971 * 336.98212 * 4 2 1 35 35 H 0.96993 * 120.00236 * 341.35453 * 7 5 4 36 36 H 0.97005 * 119.99785 * 180.02562 * 11 10 8 37 37 H 1.08998 * 110.36692 * 204.15432 * 16 5 4 38 38 H 1.08998 * 110.45932 * 81.88076 * 16 5 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 40 40 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 41 41 H 1.09000 * 109.46887 * 300.00372 * 21 20 18 42 42 H 1.08998 * 109.46846 * 59.99549 * 21 20 18 43 43 H 1.08005 * 119.97303 * 359.97438 * 23 22 21 44 44 H 1.07993 * 119.98901 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.02407 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5185 -0.6915 6 1 4.1669 -0.8770 -0.6579 7 7 3.5474 -2.7244 -1.4813 8 6 4.7733 -3.3316 -1.4190 9 1 5.5477 -2.9211 -0.7879 10 6 5.0209 -4.4739 -2.1678 11 7 4.0772 -4.9737 -2.9372 12 14 6.6933 -5.3017 -2.0833 13 1 6.6900 -6.3148 -0.9976 14 1 6.9827 -5.9661 -3.3795 15 1 7.7368 -4.2821 -1.8059 16 6 2.8099 -1.8826 0.7369 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1476 0.6238 2.7180 20 6 2.3732 -1.1969 3.5855 21 6 1.9711 -0.5868 4.9299 22 6 2.5374 -1.4213 6.0497 23 6 3.6904 -1.0182 6.6968 24 6 4.2111 -1.7826 7.7234 25 6 3.5778 -2.9535 8.1055 26 9 4.0874 -3.7010 9.1089 27 6 2.4234 -3.3581 7.4583 28 6 1.9001 -2.5892 6.4329 29 9 0.7707 -2.9805 5.8033 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0065 33 1 2.3597 -0.0452 -2.0191 34 1 1.3053 -1.4407 -1.6197 35 1 2.8520 -3.0928 -2.0483 36 1 4.2501 -5.7722 -3.4601 37 1 3.6655 -2.0413 1.3933 38 1 2.1805 -2.7722 0.7134 39 1 1.9819 -2.2119 3.5156 40 1 3.4602 -1.2204 3.5079 41 1 2.3624 0.4281 4.9998 42 1 0.8842 -0.5633 5.0075 43 1 4.1852 -0.1054 6.3992 44 1 5.1122 -1.4668 8.2280 45 1 1.9291 -4.2714 7.7553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989628598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:14 Heat of formation + Delta-G solvation = -97.528295 kcal Electronic energy + Delta-G solvation = -28784.590274 eV Core-core repulsion = 24437.789740 eV Total energy + Delta-G solvation = -4346.800534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.31370 -49.24598 -40.08248 -39.26290 -37.50034 -34.31737 -34.07364 -31.81803 -31.40754 -31.17360 -29.41414 -28.41819 -25.49135 -25.03828 -23.84064 -23.54531 -22.09347 -21.06995 -20.28195 -18.63054 -18.50948 -17.57062 -17.41340 -16.98244 -16.32596 -16.20780 -15.97629 -15.61359 -15.52447 -15.20015 -14.86482 -14.67342 -14.23249 -14.14300 -13.67838 -13.56511 -13.27778 -13.13606 -12.92115 -12.72353 -12.66381 -12.29025 -12.15860 -12.01530 -11.85853 -11.72392 -11.60386 -11.18217 -11.14301 -11.03377 -10.78858 -10.65601 -10.35132 -10.05296 -9.81930 -9.66127 -9.41857 -9.06515 -8.90448 -8.36984 -7.13913 -5.89581 -3.20766 0.58534 0.65368 2.80387 2.95604 3.22576 3.36333 3.42173 3.43578 3.53894 4.07650 4.21527 4.27425 4.46803 4.49769 4.74311 4.75638 4.92737 5.00422 5.08629 5.16235 5.23141 5.41676 5.43656 5.46011 5.48676 5.55012 5.59642 5.61853 5.68285 5.71490 5.75212 5.80826 5.95214 6.00726 6.07975 6.10171 6.15804 6.32547 6.41930 6.43578 6.44153 6.64133 6.81017 7.58608 7.79818 8.27559 8.35296 9.39957 9.93452 10.28257 11.32352 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.003036 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.135061 B = 9221.453245 C =11579.255910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.064 0.936 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.073 3.927 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.554 6.554 20 C -0.133 4.133 21 C -0.062 4.062 22 C -0.123 4.123 23 C -0.057 4.057 24 C -0.161 4.161 25 C 0.123 3.877 26 F -0.133 7.133 27 C -0.190 4.190 28 C 0.134 3.866 29 F -0.126 7.126 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 8.381 18.684 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.082 0.918 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.053 4.053 17 N -0.342 5.342 18 C 0.318 3.682 19 O -0.433 6.433 20 C -0.173 4.173 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.180 4.180 25 C 0.104 3.896 26 F -0.112 7.112 27 C -0.210 4.210 28 C 0.114 3.886 29 F -0.104 7.104 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.872 8.793 18.881 21.185 hybrid contribution 0.611 -1.191 -0.051 1.340 sum -3.261 7.602 18.830 20.567 Atomic orbital electron populations 1.22122 0.95158 1.02179 1.02374 1.21499 0.94214 0.96060 0.84747 0.91079 1.23004 0.99035 0.99628 0.95858 1.21275 0.94611 0.89401 0.88666 0.91801 1.42318 1.14296 1.27585 1.51050 1.19234 0.90247 1.06318 1.22284 0.90965 1.24768 0.97938 0.98448 0.99251 1.69657 1.32511 1.24069 1.31365 0.86192 0.83498 0.79457 0.77026 1.21574 1.21674 1.20630 1.23509 0.94550 0.87504 0.99773 1.48666 1.52140 1.28814 1.04628 1.20171 0.80265 0.85213 0.82597 1.90651 1.40971 1.28139 1.83568 1.21622 1.02881 1.00458 0.92354 1.20274 1.02074 0.98195 0.89412 1.20094 0.96927 0.95477 0.99931 1.20859 0.93700 0.99471 0.93521 1.21223 1.02119 0.94623 1.00040 1.17306 0.93473 0.90955 0.87876 1.91534 1.86346 1.75527 1.57750 1.21043 0.98089 1.03010 0.98841 1.17181 0.84448 0.93952 0.92979 1.91550 1.47844 1.90449 1.80584 0.91608 0.91946 0.92565 0.90301 0.90375 0.77820 0.93292 0.91298 0.91205 0.88784 0.88583 0.89362 0.89619 0.83678 0.83935 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.11 37.16 0.34 -1.83 16 2 C 0.14 2.00 3.46 -66.94 -0.23 1.77 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.08 6.11 -24.89 -0.15 -2.23 16 5 C 0.17 3.12 3.69 -65.78 -0.24 2.88 16 6 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 7 N -0.71 -16.42 5.28 -51.35 -0.27 -16.69 16 8 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 12 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.18 6.38 -2.53 -0.02 1.17 16 17 N -0.61 -9.19 3.06 -163.01 -0.50 -9.69 16 18 C 0.53 7.83 7.64 -10.98 -0.08 7.74 16 19 O -0.55 -9.45 15.03 5.55 0.08 -9.37 16 20 C -0.13 -1.56 4.68 -27.88 -0.13 -1.69 16 21 C -0.06 -0.64 4.36 -27.88 -0.12 -0.77 16 22 C -0.12 -1.16 5.14 -104.55 -0.54 -1.70 16 23 C -0.06 -0.44 9.66 -39.61 -0.38 -0.82 16 24 C -0.16 -1.23 10.03 -39.51 -0.40 -1.63 16 25 C 0.12 1.12 7.30 -39.43 -0.29 0.83 16 26 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 27 C -0.19 -1.77 10.01 -39.45 -0.39 -2.17 16 28 C 0.13 1.38 7.24 -39.43 -0.29 1.09 16 29 F -0.13 -1.46 16.66 2.25 0.04 -1.43 16 30 H 0.06 0.97 6.89 -51.93 -0.36 0.61 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 35 H 0.39 9.55 7.71 -40.82 -0.31 9.24 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.08 7.49 -51.93 -0.39 0.69 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.10 1.02 7.85 -51.93 -0.41 0.61 16 41 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 42 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 43 H 0.15 0.79 8.04 -52.48 -0.42 0.37 16 44 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -29.82 382.28 -8.78 -38.60 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.46 Total: 8.02 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.17 Total: -4.27 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.05 Total: -52.38 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.82 -8.78 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.925 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds