Wall clock time and date at job start Tue Mar 31 2020 21:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.00321 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95830 * 2 1 3 5 5 C 1.55156 * 103.02551 * 218.66920 * 4 2 1 6 6 H 1.09001 * 111.00218 * 277.24015 * 5 4 2 7 7 N 1.46494 * 111.00563 * 153.38064 * 5 4 2 8 8 C 1.36944 * 119.99814 * 161.35300 * 7 5 4 9 9 H 1.08006 * 119.99600 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99949 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99912 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47323 * 90.00024 * 12 10 8 14 14 H 1.48502 * 109.46982 * 209.99850 * 12 10 8 15 15 H 1.48502 * 109.47092 * 329.99487 * 12 10 8 16 16 C 1.54911 * 101.57846 * 35.30562 * 5 4 2 17 17 N 1.47028 * 109.87931 * 121.09976 * 2 1 3 18 18 C 1.34777 * 125.64354 * 298.38503 * 17 2 1 19 19 O 1.21283 * 120.00463 * 359.72563 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.44686 * 18 17 2 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 17 22 22 C 1.50700 * 109.47208 * 180.02562 * 21 20 18 23 23 C 1.38226 * 119.98926 * 100.00038 * 22 21 20 24 24 C 1.38182 * 120.05330 * 180.02562 * 23 22 21 25 25 C 1.38498 * 120.02212 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.01015 * 179.97438 * 25 24 23 27 27 C 1.38392 * 119.97563 * 0.02562 * 25 24 23 28 28 C 1.38440 * 119.95171 * 359.75661 * 27 25 24 29 29 F 1.35097 * 120.01708 * 180.22677 * 28 27 25 30 30 H 1.09004 * 109.46854 * 300.35671 * 1 2 3 31 31 H 1.08997 * 109.46778 * 60.35445 * 1 2 3 32 32 H 1.08997 * 109.47185 * 180.35990 * 1 2 3 33 33 H 1.08994 * 110.84853 * 100.19898 * 4 2 1 34 34 H 1.09001 * 110.51971 * 336.98212 * 4 2 1 35 35 H 0.96993 * 120.00236 * 341.35453 * 7 5 4 36 36 H 0.97005 * 119.99785 * 180.02562 * 11 10 8 37 37 H 1.08998 * 110.36692 * 204.15432 * 16 5 4 38 38 H 1.08998 * 110.45932 * 81.88076 * 16 5 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 40 40 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 41 41 H 1.09000 * 109.46887 * 300.00372 * 21 20 18 42 42 H 1.08998 * 109.46846 * 59.99549 * 21 20 18 43 43 H 1.08005 * 119.97303 * 359.97438 * 23 22 21 44 44 H 1.07993 * 119.98901 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.02407 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5185 -0.6915 6 1 4.1669 -0.8770 -0.6579 7 7 3.5474 -2.7244 -1.4813 8 6 4.7733 -3.3316 -1.4190 9 1 5.5477 -2.9211 -0.7879 10 6 5.0209 -4.4739 -2.1678 11 7 4.0772 -4.9737 -2.9372 12 14 6.6933 -5.3017 -2.0833 13 1 6.6900 -6.3148 -0.9976 14 1 6.9827 -5.9661 -3.3795 15 1 7.7368 -4.2821 -1.8059 16 6 2.8099 -1.8826 0.7369 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1476 0.6238 2.7180 20 6 2.3732 -1.1969 3.5855 21 6 1.9711 -0.5868 4.9299 22 6 2.5374 -1.4213 6.0497 23 6 3.6904 -1.0182 6.6968 24 6 4.2111 -1.7826 7.7234 25 6 3.5778 -2.9535 8.1055 26 9 4.0874 -3.7010 9.1089 27 6 2.4234 -3.3581 7.4583 28 6 1.9001 -2.5892 6.4329 29 9 0.7707 -2.9805 5.8033 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0276 0.0065 33 1 2.3597 -0.0452 -2.0191 34 1 1.3053 -1.4407 -1.6197 35 1 2.8520 -3.0928 -2.0483 36 1 4.2501 -5.7722 -3.4601 37 1 3.6655 -2.0413 1.3933 38 1 2.1805 -2.7722 0.7134 39 1 1.9819 -2.2119 3.5156 40 1 3.4602 -1.2204 3.5079 41 1 2.3624 0.4281 4.9998 42 1 0.8842 -0.5633 5.0075 43 1 4.1852 -0.1054 6.3992 44 1 5.1122 -1.4668 8.2280 45 1 1.9291 -4.2714 7.7553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989628598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:13 Heat of formation + Delta-G solvation = -112.654083 kcal Electronic energy + Delta-G solvation = -28785.246177 eV Core-core repulsion = 24437.789740 eV Total energy + Delta-G solvation = -4347.456438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06693 -50.02306 -41.27841 -40.00791 -38.79204 -35.98657 -35.02067 -33.27864 -32.85840 -31.84843 -30.31286 -29.98152 -26.73372 -26.11279 -25.53931 -24.21701 -23.07785 -22.13770 -21.65461 -19.86041 -19.24364 -19.18876 -18.31269 -18.17557 -17.44373 -17.03065 -16.86614 -16.66206 -16.41105 -16.33211 -16.12118 -15.60785 -15.44356 -15.33567 -14.87839 -14.80283 -14.55781 -14.25571 -14.21015 -13.78802 -13.65503 -13.46494 -13.39206 -13.03376 -12.86484 -12.84905 -12.66848 -12.61115 -12.41651 -12.27820 -12.09649 -12.04476 -11.97915 -11.71101 -11.48677 -11.01900 -10.80222 -10.09064 -9.65202 -9.63615 -9.04072 -7.93459 -5.23335 -0.11565 -0.00610 1.51903 1.52013 1.60303 1.62186 1.98339 2.34571 2.58267 2.84148 3.29947 3.38742 3.40978 3.57464 3.65025 3.82655 3.86875 3.93162 3.99969 4.05791 4.13357 4.18699 4.23511 4.33127 4.46933 4.52417 4.56422 4.67015 4.74668 4.80417 4.82242 4.86955 4.90375 4.92512 5.05181 5.08173 5.10986 5.14436 5.24406 5.28574 5.39883 5.43897 5.56583 5.74854 6.27608 6.56940 7.15441 7.35470 8.07104 8.30787 9.29507 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.003036 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.135061 B = 9221.453245 C =11579.255910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.078 0.922 4 C -0.125 4.125 5 C 0.165 3.835 6 H 0.066 0.934 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.289 1.289 14 H -0.300 1.300 15 H -0.267 1.267 16 C 0.087 3.913 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.576 6.576 20 C -0.128 4.128 21 C -0.054 4.054 22 C -0.127 4.127 23 C -0.051 4.051 24 C -0.152 4.152 25 C 0.112 3.888 26 F -0.138 7.138 27 C -0.196 4.196 28 C 0.113 3.887 29 F -0.140 7.140 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 9.729 19.940 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.083 0.917 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.099 0.901 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.797 3.203 13 H -0.216 1.216 14 H -0.227 1.227 15 H -0.192 1.192 16 C -0.038 4.038 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.457 6.457 20 C -0.168 4.168 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.068 4.068 24 C -0.171 4.171 25 C 0.093 3.907 26 F -0.117 7.117 27 C -0.216 4.216 28 C 0.094 3.906 29 F -0.119 7.119 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.191 0.809 44 H 0.186 0.814 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.460 10.186 20.180 22.739 hybrid contribution 0.140 -1.515 -0.378 1.568 sum -2.320 8.671 19.802 21.741 Atomic orbital electron populations 1.22050 0.94399 1.01819 1.02803 1.21562 0.94799 0.96134 0.84112 0.90389 1.22915 0.97509 0.99436 0.96523 1.21442 0.95934 0.87938 0.89185 0.91654 1.42448 1.13262 1.28886 1.51727 1.19628 0.91201 1.05704 1.20790 0.90068 1.25503 1.01055 0.99726 0.99942 1.69804 1.34357 1.24605 1.32976 0.85225 0.80231 0.78539 0.76266 1.21581 1.22662 1.19212 1.23133 0.94672 0.87323 0.98721 1.48700 1.52095 1.28402 1.05147 1.20673 0.79708 0.85072 0.82839 1.90643 1.41941 1.29286 1.83794 1.21640 1.03660 0.99617 0.91853 1.20167 1.01195 0.98767 0.89045 1.20090 0.97657 0.95109 0.99990 1.21162 0.92760 1.00137 0.92768 1.21530 1.02467 0.93562 0.99507 1.17498 0.93638 0.91601 0.87951 1.91522 1.86379 1.75805 1.57999 1.21140 0.98420 1.03279 0.98719 1.17399 0.84578 0.94842 0.93776 1.91510 1.48701 1.90706 1.80970 0.92824 0.89860 0.93266 0.88912 0.90874 0.79100 0.94055 0.90335 0.92658 0.89147 0.86881 0.88414 0.91243 0.80923 0.81394 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.11 71.98 0.66 -3.29 16 2 C 0.14 3.76 3.46 45.34 0.16 3.91 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.13 -3.64 6.11 31.79 0.19 -3.45 16 5 C 0.17 5.78 3.69 46.38 0.17 5.96 16 6 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 7 N -0.72 -33.12 5.28 -316.37 -1.67 -34.79 16 8 C -0.24 -12.31 9.98 84.03 0.84 -11.47 16 9 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 10 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 11 N -0.97 -56.44 13.06 21.65 0.28 -56.16 16 12 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.09 2.74 6.38 86.86 0.55 3.30 16 17 N -0.61 -17.60 3.06 -788.04 -2.41 -20.01 16 18 C 0.53 14.92 7.64 87.66 0.67 15.59 16 19 O -0.58 -19.03 15.03 -3.04 -0.05 -19.08 16 20 C -0.13 -2.82 4.68 29.85 0.14 -2.68 16 21 C -0.05 -1.05 4.36 29.85 0.13 -0.92 16 22 C -0.13 -2.21 5.14 -19.82 -0.10 -2.31 16 23 C -0.05 -0.63 9.66 22.25 0.22 -0.41 16 24 C -0.15 -1.90 10.03 22.32 0.22 -1.67 16 25 C 0.11 1.87 7.30 22.37 0.16 2.03 16 26 F -0.14 -2.51 17.27 44.97 0.78 -1.73 16 27 C -0.20 -3.53 10.01 22.35 0.22 -3.31 16 28 C 0.11 2.27 7.24 22.37 0.16 2.44 16 29 F -0.14 -3.32 16.66 44.97 0.75 -2.57 16 30 H 0.05 1.53 6.89 -2.39 -0.02 1.51 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.22 7.70 -2.39 -0.02 2.20 16 35 H 0.38 18.75 7.71 -92.71 -0.71 18.03 16 36 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.08 2.31 7.49 -2.39 -0.02 2.29 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.11 2.11 7.85 -2.39 -0.02 2.09 16 41 H 0.10 1.71 7.96 -2.39 -0.02 1.69 16 42 H 0.07 1.58 7.90 -2.39 -0.02 1.56 16 43 H 0.17 1.17 8.04 -2.91 -0.02 1.15 16 44 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -63.67 382.28 4.87 -58.80 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.30 Total: 29.37 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.86 Total: 0.42 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.80 Total: -110.96 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.53 Total: -4.30 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.67 4.87 -58.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.853 kcal (2) G-P(sol) polarization free energy of solvation -63.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds