Wall clock time and date at job start Tue Mar 31 2020 21:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09002 * 111.00062 * 82.57845 * 5 4 2 7 7 N 1.46501 * 111.00250 * 206.42447 * 5 4 2 8 8 C 1.36936 * 119.99720 * 205.00384 * 7 5 4 9 9 H 1.07996 * 120.00312 * 359.97438 * 8 7 5 10 10 C 1.38821 * 119.99953 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99647 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47032 * 59.99715 * 12 10 8 14 14 H 1.48495 * 109.47058 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47127 * 299.99756 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.38228 * 119.98923 * 99.99922 * 22 21 20 24 24 C 1.38187 * 120.05029 * 179.97438 * 23 22 21 25 25 C 1.38495 * 120.02560 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.01280 * 179.97438 * 25 24 23 27 27 C 1.38397 * 119.97458 * 0.02562 * 25 24 23 28 28 C 1.38442 * 119.95041 * 359.75960 * 27 25 24 29 29 F 1.35091 * 120.01443 * 180.23056 * 28 27 25 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96994 * 120.00341 * 25.00353 * 7 5 4 36 36 H 0.97001 * 119.99778 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.07999 * 119.97489 * 359.97364 * 23 22 21 44 44 H 1.08003 * 119.98606 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02537 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 4.1655 -0.8679 0.6615 7 7 3.5532 -2.7175 1.4853 8 6 4.8165 -3.2443 1.5271 9 1 5.6169 -2.7723 0.9768 10 6 5.0681 -4.3857 2.2761 11 7 4.0924 -4.9612 2.9465 12 14 6.7912 -5.1047 2.3327 13 1 7.7301 -4.0970 2.8880 14 1 6.7952 -6.3130 3.1960 15 1 7.2182 -5.4755 0.9596 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 6 1.7656 -2.3078 -6.7179 24 6 2.2926 -3.0656 -7.7462 25 6 3.6199 -2.9118 -8.1106 26 9 4.1350 -3.6532 -9.1156 27 6 4.4186 -1.9991 -7.4440 28 6 3.8883 -1.2372 -6.4168 29 9 4.6656 -0.3425 -5.7684 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 2.8343 -3.1416 1.9792 36 1 4.2683 -5.7585 3.4702 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 0.7303 -2.4281 -6.4347 44 1 1.6692 -3.7781 -8.2660 45 1 5.4538 -1.8788 -7.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989628599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:17 Heat of formation + Delta-G solvation = -97.506461 kcal Electronic energy + Delta-G solvation = -28758.378065 eV Core-core repulsion = 24411.578477 eV Total energy + Delta-G solvation = -4346.799588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.31657 -49.24872 -40.06924 -39.26153 -37.49242 -34.31763 -34.07446 -31.80294 -31.40993 -31.17442 -29.41496 -28.42362 -25.48707 -25.04025 -23.82283 -23.54814 -22.09485 -21.07321 -20.28360 -18.62014 -18.51136 -17.57352 -17.44479 -16.99929 -16.30582 -16.15734 -16.07930 -15.60013 -15.44495 -15.20626 -14.90135 -14.66283 -14.24890 -14.13009 -13.67888 -13.45467 -13.36608 -13.25038 -12.81612 -12.68842 -12.65842 -12.29163 -12.11493 -12.04711 -11.87518 -11.73507 -11.58714 -11.18252 -11.15900 -11.02806 -10.78985 -10.65833 -10.34378 -10.08016 -9.81393 -9.66258 -9.42061 -9.06033 -8.90714 -8.37345 -7.14255 -5.89559 -3.20700 0.58285 0.65090 2.80582 2.95256 3.21954 3.37290 3.42676 3.42975 3.53675 4.07398 4.21287 4.27031 4.46995 4.49696 4.74083 4.75541 4.92555 5.00800 5.08849 5.16883 5.23752 5.41510 5.42674 5.46932 5.49447 5.55073 5.59306 5.61646 5.67604 5.71072 5.75543 5.80596 5.94964 6.00443 6.06958 6.10890 6.15825 6.31957 6.41684 6.43135 6.45903 6.63887 6.79988 7.58693 7.79670 8.27600 8.35295 9.39933 9.93144 10.28087 11.32254 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.002989 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.834219 B = 9364.539598 C =11675.550145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.072 3.928 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.554 6.554 20 C -0.133 4.133 21 C -0.062 4.062 22 C -0.123 4.123 23 C -0.057 4.057 24 C -0.161 4.161 25 C 0.123 3.877 26 F -0.133 7.133 27 C -0.190 4.190 28 C 0.134 3.866 29 F -0.126 7.126 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 6.763 -18.878 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.433 6.433 20 C -0.173 4.173 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.180 4.180 25 C 0.104 3.896 26 F -0.112 7.112 27 C -0.210 4.210 28 C 0.114 3.886 29 F -0.104 7.104 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.944 7.227 -19.060 21.233 hybrid contribution 1.106 -0.806 0.110 1.373 sum -4.837 6.421 -18.950 20.585 Atomic orbital electron populations 1.22123 0.95211 1.02109 1.02349 1.21499 0.94196 0.96102 0.84808 0.91120 1.23045 0.99173 0.99683 0.95774 1.21280 0.94712 0.89484 0.88526 0.91422 1.42308 1.09610 1.27872 1.55271 1.19216 0.86848 1.07026 1.25120 0.90985 1.24769 0.97663 0.98253 0.99685 1.69650 1.30920 1.22376 1.34712 0.86260 0.83912 0.78463 0.77486 1.21105 1.21603 1.21116 1.23576 0.94464 0.87504 0.99823 1.48734 1.52007 1.28959 1.04607 1.20162 0.80332 0.85138 0.82587 1.90652 1.40991 1.28099 1.83590 1.21620 1.02929 1.00401 0.92354 1.20273 1.01905 0.98369 0.89409 1.20094 0.92362 1.00049 0.99924 1.20858 1.00277 0.93005 0.93415 1.21224 0.93922 1.02745 1.00121 1.17306 0.92135 0.92377 0.87791 1.91533 1.87269 1.74712 1.57641 1.21045 1.02134 0.99139 0.98662 1.17180 0.88606 0.90046 0.92723 1.91549 1.74181 1.64995 1.79685 0.91970 0.92609 0.91640 0.90371 0.90418 0.77837 0.93240 0.91268 0.91213 0.88756 0.88627 0.89389 0.89589 0.83695 0.83938 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.10 37.16 0.34 -1.80 16 2 C 0.14 2.00 3.45 -66.96 -0.23 1.76 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.11 6.12 -24.90 -0.15 -2.26 16 5 C 0.17 3.13 3.71 -65.78 -0.24 2.89 16 6 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 7 N -0.71 -16.39 5.24 -51.35 -0.27 -16.66 16 8 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 12 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C 0.07 1.17 6.41 -2.35 -0.02 1.15 16 17 N -0.61 -9.18 3.08 -162.76 -0.50 -9.68 16 18 C 0.53 7.81 7.64 -10.99 -0.08 7.73 16 19 O -0.55 -9.45 15.02 5.56 0.08 -9.37 16 20 C -0.13 -1.55 4.70 -27.88 -0.13 -1.69 16 21 C -0.06 -0.64 4.36 -27.88 -0.12 -0.76 16 22 C -0.12 -1.16 5.14 -104.55 -0.54 -1.70 16 23 C -0.06 -0.44 9.66 -39.60 -0.38 -0.82 16 24 C -0.16 -1.23 10.02 -39.51 -0.40 -1.62 16 25 C 0.12 1.12 7.30 -39.43 -0.29 0.83 16 26 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 27 C -0.19 -1.77 10.01 -39.45 -0.39 -2.16 16 28 C 0.13 1.37 7.24 -39.43 -0.29 1.09 16 29 F -0.13 -1.45 16.66 2.25 0.04 -1.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.95 6.89 -51.93 -0.36 0.59 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.21 7.72 -51.93 -0.40 0.81 16 35 H 0.39 9.52 7.77 -40.82 -0.32 9.20 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.11 7.86 -51.92 -0.41 0.70 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 42 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 43 H 0.15 0.79 8.04 -52.49 -0.42 0.37 16 44 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -29.77 382.35 -8.78 -38.56 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.47 Total: 7.96 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.17 Total: -4.31 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.05 Total: -52.31 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.77 -8.78 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.951 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds