Wall clock time and date at job start Tue Mar 31 2020 21:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09002 * 111.00062 * 82.57845 * 5 4 2 7 7 N 1.46501 * 111.00250 * 206.42447 * 5 4 2 8 8 C 1.36936 * 119.99720 * 205.00384 * 7 5 4 9 9 H 1.07996 * 120.00312 * 359.97438 * 8 7 5 10 10 C 1.38821 * 119.99953 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99647 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47032 * 59.99715 * 12 10 8 14 14 H 1.48495 * 109.47058 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47127 * 299.99756 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.38228 * 119.98923 * 99.99922 * 22 21 20 24 24 C 1.38187 * 120.05029 * 179.97438 * 23 22 21 25 25 C 1.38495 * 120.02560 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.01280 * 179.97438 * 25 24 23 27 27 C 1.38397 * 119.97458 * 0.02562 * 25 24 23 28 28 C 1.38442 * 119.95041 * 359.75960 * 27 25 24 29 29 F 1.35091 * 120.01443 * 180.23056 * 28 27 25 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96994 * 120.00341 * 25.00353 * 7 5 4 36 36 H 0.97001 * 119.99778 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.07999 * 119.97489 * 359.97364 * 23 22 21 44 44 H 1.08003 * 119.98606 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.02537 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 4.1655 -0.8679 0.6615 7 7 3.5532 -2.7175 1.4853 8 6 4.8165 -3.2443 1.5271 9 1 5.6169 -2.7723 0.9768 10 6 5.0681 -4.3857 2.2761 11 7 4.0924 -4.9612 2.9465 12 14 6.7912 -5.1047 2.3327 13 1 7.7301 -4.0970 2.8880 14 1 6.7952 -6.3130 3.1960 15 1 7.2182 -5.4755 0.9596 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 6 1.7656 -2.3078 -6.7179 24 6 2.2926 -3.0656 -7.7462 25 6 3.6199 -2.9118 -8.1106 26 9 4.1350 -3.6532 -9.1156 27 6 4.4186 -1.9991 -7.4440 28 6 3.8883 -1.2372 -6.4168 29 9 4.6656 -0.3425 -5.7684 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 2.8343 -3.1416 1.9792 36 1 4.2683 -5.7585 3.4702 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 0.7303 -2.4281 -6.4347 44 1 1.6692 -3.7781 -8.2660 45 1 5.4538 -1.8788 -7.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989628599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:16 Heat of formation + Delta-G solvation = -112.531894 kcal Electronic energy + Delta-G solvation = -28759.029617 eV Core-core repulsion = 24411.578477 eV Total energy + Delta-G solvation = -4347.451139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.06316 -50.02293 -41.26297 -40.00577 -38.78724 -35.99061 -35.01966 -33.27975 -32.84356 -31.84737 -30.31260 -29.98704 -26.72148 -26.10738 -25.53159 -24.21698 -23.07786 -22.14375 -21.65958 -19.83760 -19.26586 -19.22287 -18.30924 -18.17704 -17.42041 -17.03876 -16.88341 -16.64607 -16.40148 -16.25863 -16.17329 -15.64980 -15.40019 -15.35285 -14.89969 -14.79484 -14.46748 -14.34784 -14.18384 -13.71371 -13.63262 -13.52295 -13.35245 -13.02909 -12.86845 -12.81393 -12.68090 -12.61350 -12.40593 -12.33773 -12.13235 -12.05070 -11.97199 -11.72433 -11.47968 -11.01685 -10.80121 -10.09008 -9.65434 -9.63377 -9.04403 -7.94162 -5.23865 -0.11552 -0.00618 1.51429 1.52396 1.58510 1.62618 1.97552 2.34457 2.57715 2.84213 3.29745 3.37539 3.40889 3.57497 3.65409 3.83998 3.87861 3.93256 3.98888 4.06782 4.12461 4.17650 4.25077 4.32511 4.47361 4.52443 4.56528 4.67043 4.75267 4.80929 4.82093 4.87111 4.90900 4.92445 5.05055 5.08937 5.11305 5.15405 5.25096 5.28368 5.39036 5.44205 5.55210 5.74819 6.26949 6.56978 7.15564 7.34981 8.06224 8.30589 9.28370 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.002989 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.834219 B = 9364.539598 C =11675.550145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.072 0.928 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.064 0.936 7 N -0.722 5.722 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.067 4.067 11 N -0.965 5.965 12 Si 0.967 3.033 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.278 1.278 16 C 0.088 3.912 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.576 6.576 20 C -0.128 4.128 21 C -0.054 4.054 22 C -0.127 4.127 23 C -0.051 4.051 24 C -0.152 4.152 25 C 0.112 3.888 26 F -0.138 7.138 27 C -0.196 4.196 28 C 0.114 3.886 29 F -0.140 7.140 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 6.764 -20.065 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.090 0.910 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.082 0.918 7 N -0.361 5.361 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.260 4.260 11 N -0.615 5.615 12 Si 0.797 3.203 13 H -0.206 1.206 14 H -0.224 1.224 15 H -0.204 1.204 16 C -0.038 4.038 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.457 6.457 20 C -0.167 4.167 21 C -0.092 4.092 22 C -0.129 4.129 23 C -0.069 4.069 24 C -0.171 4.171 25 C 0.093 3.907 26 F -0.117 7.117 27 C -0.215 4.215 28 C 0.095 3.905 29 F -0.118 7.118 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.190 0.810 44 H 0.186 0.814 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.466 7.275 -20.288 22.502 hybrid contribution 1.230 -0.719 0.418 1.485 sum -5.235 6.556 -19.870 21.568 Atomic orbital electron populations 1.22040 0.94053 1.02041 1.02776 1.21552 0.95088 0.95916 0.84175 0.90950 1.22940 0.97651 0.99474 0.96386 1.21438 0.95914 0.88035 0.89261 0.91832 1.42403 1.08454 1.29137 1.56068 1.19585 0.88054 1.06447 1.23620 0.90389 1.25480 1.00837 0.99253 1.00392 1.69791 1.32632 1.22877 1.36225 0.85309 0.80222 0.77376 0.77426 1.20578 1.22421 1.20384 1.23191 0.94605 0.87560 0.98438 1.48766 1.51934 1.28592 1.05106 1.20668 0.79785 0.84981 0.82829 1.90643 1.42064 1.29172 1.83820 1.21636 1.02635 1.00644 0.91824 1.20166 1.02319 0.97637 0.89059 1.20088 0.92200 1.00573 0.99990 1.21156 1.01228 0.91833 0.92675 1.21527 0.93419 1.02528 0.99630 1.17496 0.92850 0.92481 0.87860 1.91521 1.87462 1.74831 1.57887 1.21143 1.02701 0.99148 0.98522 1.17385 0.89060 0.90589 0.93484 1.91510 1.74630 1.65599 1.80068 0.90040 0.92832 0.92731 0.89307 0.90543 0.78973 0.93963 0.90791 0.91840 0.88882 0.87129 0.88547 0.91127 0.81030 0.81436 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.10 71.98 0.65 -3.12 16 2 C 0.14 3.75 3.45 45.34 0.16 3.90 16 3 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.13 -3.68 6.12 31.78 0.19 -3.49 16 5 C 0.16 5.82 3.71 46.38 0.17 5.99 16 6 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 7 N -0.72 -33.07 5.24 -316.37 -1.66 -34.73 16 8 C -0.25 -12.63 9.96 84.04 0.84 -11.79 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 10 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 11 N -0.97 -56.04 13.06 21.65 0.28 -55.75 16 12 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 C 0.09 2.74 6.41 86.79 0.56 3.30 16 17 N -0.61 -17.59 3.08 -787.25 -2.42 -20.02 16 18 C 0.53 14.91 7.64 87.66 0.67 15.58 16 19 O -0.58 -19.06 15.02 -3.04 -0.05 -19.11 16 20 C -0.13 -2.80 4.70 29.85 0.14 -2.66 16 21 C -0.05 -1.05 4.36 29.85 0.13 -0.92 16 22 C -0.13 -2.20 5.14 -19.82 -0.10 -2.30 16 23 C -0.05 -0.64 9.66 22.26 0.22 -0.42 16 24 C -0.15 -1.91 10.02 22.32 0.22 -1.69 16 25 C 0.11 1.86 7.30 22.37 0.16 2.02 16 26 F -0.14 -2.50 17.27 44.97 0.78 -1.72 16 27 C -0.20 -3.49 10.01 22.36 0.22 -3.27 16 28 C 0.11 2.27 7.24 22.37 0.16 2.43 16 29 F -0.14 -3.24 16.66 44.97 0.75 -2.49 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.50 6.89 -2.38 -0.02 1.48 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.29 7.72 -2.39 -0.02 2.27 16 35 H 0.38 18.66 7.77 -92.71 -0.72 17.94 16 36 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.07 2.24 7.50 -2.39 -0.02 2.22 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 2.09 7.86 -2.38 -0.02 2.07 16 40 H 0.11 2.10 8.14 -2.38 -0.02 2.09 16 41 H 0.10 1.70 7.96 -2.39 -0.02 1.68 16 42 H 0.07 1.59 7.89 -2.39 -0.02 1.57 16 43 H 0.17 1.21 8.04 -2.91 -0.02 1.19 16 44 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -63.22 382.35 4.87 -58.36 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.29 Total: 29.09 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.86 Total: 0.42 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.80 Total: -110.50 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.53 Total: -4.22 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.22 4.87 -58.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989628599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.175 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds