Wall clock time and date at job start Tue Mar 31 2020 21:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99883 * 2 1 4 4 C 1.54337 * 109.99252 * 238.96277 * 2 1 3 5 5 C 1.55158 * 103.02041 * 218.66625 * 4 2 1 6 6 H 1.09001 * 111.00241 * 153.38029 * 5 4 2 7 7 N 1.46500 * 111.00545 * 277.23050 * 5 4 2 8 8 C 1.36936 * 120.00017 * 198.64979 * 7 5 4 9 9 H 1.08002 * 119.99949 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99804 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99859 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99673 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46916 * 90.00612 * 12 10 8 14 14 H 1.48507 * 109.46572 * 209.99894 * 12 10 8 15 15 H 1.48499 * 109.47176 * 329.99946 * 12 10 8 16 16 C 1.54911 * 101.58171 * 35.30834 * 5 4 2 17 17 N 1.47022 * 109.88116 * 121.09591 * 2 1 3 18 18 C 1.34776 * 125.64990 * 298.38929 * 17 2 1 19 19 O 1.21276 * 119.99688 * 359.72264 * 18 17 2 20 20 C 1.50698 * 120.00098 * 179.71480 * 18 17 2 21 21 C 1.52997 * 109.47078 * 180.02562 * 20 18 17 22 22 C 1.50707 * 109.47438 * 180.02562 * 21 20 18 23 23 C 1.38208 * 120.00131 * 265.21787 * 22 21 20 24 24 C 1.38417 * 119.99856 * 180.24959 * 23 22 21 25 25 F 1.35104 * 119.99976 * 179.75921 * 24 23 22 26 26 C 1.38475 * 120.00486 * 359.78849 * 24 23 22 27 27 C 1.38165 * 119.99497 * 359.97438 * 26 24 23 28 28 C 1.38430 * 119.99883 * 84.99809 * 22 21 20 29 29 F 1.35104 * 119.99956 * 359.97438 * 28 22 21 30 30 H 1.08997 * 109.47037 * 300.35729 * 1 2 3 31 31 H 1.09000 * 109.46637 * 60.35640 * 1 2 3 32 32 H 1.08997 * 109.46857 * 180.35785 * 1 2 3 33 33 H 1.09001 * 110.85015 * 100.19600 * 4 2 1 34 34 H 1.09005 * 110.51304 * 336.97653 * 4 2 1 35 35 H 0.97000 * 119.99553 * 18.65156 * 7 5 4 36 36 H 0.97004 * 119.99610 * 180.02562 * 11 10 8 37 37 H 1.08999 * 110.36544 * 204.15301 * 16 5 4 38 38 H 1.09000 * 110.36738 * 81.82747 * 16 5 4 39 39 H 1.09002 * 109.46739 * 60.00455 * 20 18 17 40 40 H 1.08995 * 109.47400 * 300.00610 * 20 18 17 41 41 H 1.09002 * 109.47371 * 60.00343 * 21 20 18 42 42 H 1.09000 * 109.47517 * 300.00431 * 21 20 18 43 43 H 1.07998 * 119.99934 * 359.97438 * 23 22 21 44 44 H 1.07991 * 120.00537 * 179.97438 * 26 24 23 45 45 H 1.07999 * 119.99826 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5184 -0.6914 6 1 3.4807 -2.4156 -1.2791 7 7 4.4700 -0.6562 -0.6463 8 6 5.7189 -1.2116 -0.5632 9 1 5.8313 -2.2853 -0.5313 10 6 6.8404 -0.3947 -0.5210 11 7 6.7032 0.9138 -0.5604 12 14 8.5441 -1.1524 -0.4083 13 1 9.0729 -1.3870 -1.7760 14 1 9.4496 -0.2282 0.3207 15 1 8.4642 -2.4441 0.3199 16 6 2.8099 -1.8826 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 1.1476 0.6238 2.7179 20 6 2.3784 -1.1934 3.5855 21 6 1.9805 -0.5806 4.9297 22 6 2.5519 -1.4116 6.0496 23 6 1.7836 -2.3967 6.6406 24 6 2.3068 -3.1564 7.6726 25 9 1.5540 -4.1162 8.2536 26 6 3.6014 -2.9325 8.1100 27 6 4.3711 -1.9509 7.5159 28 6 3.8480 -1.1912 6.4832 29 9 4.6007 -0.2315 5.9021 30 1 -0.3633 0.5194 0.8867 31 1 -0.3632 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.3598 -0.0450 -2.0192 34 1 1.3053 -1.4406 -1.6197 35 1 4.3689 0.3081 -0.6753 36 1 7.4870 1.4846 -0.5313 37 1 3.6655 -2.0412 1.3932 38 1 2.1801 -2.7718 0.7114 39 1 3.4651 -1.2160 3.5035 40 1 1.9879 -2.2089 3.5197 41 1 0.8938 -0.5582 5.0114 42 1 2.3707 0.4351 4.9958 43 1 0.7736 -2.5708 6.3002 44 1 4.0094 -3.5249 8.9155 45 1 5.3807 -1.7759 7.8573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989830768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:19 Heat of formation + Delta-G solvation = -113.729521 kcal Electronic energy + Delta-G solvation = -29320.119173 eV Core-core repulsion = 24972.616100 eV Total energy + Delta-G solvation = -4347.503072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.99220 -49.94360 -41.25864 -40.01548 -38.80721 -35.80715 -35.18477 -33.21209 -32.87089 -31.41286 -30.42402 -30.07977 -26.75718 -26.24518 -25.66222 -24.01725 -23.28564 -22.24462 -21.31524 -19.83047 -19.23063 -18.70468 -18.38527 -18.28367 -17.81360 -17.38018 -16.90865 -16.60088 -16.39477 -16.18776 -15.73820 -15.41279 -15.40602 -15.22798 -14.92740 -14.79271 -14.38938 -14.33743 -14.07916 -13.77320 -13.57487 -13.50992 -13.36860 -13.22407 -13.08358 -12.85314 -12.71810 -12.64726 -12.26305 -12.21774 -12.14758 -12.01499 -11.94750 -11.63230 -11.48870 -11.03944 -10.80454 -10.14777 -9.62301 -9.57543 -8.96805 -7.93203 -5.22035 -0.12626 -0.00862 1.48402 1.49355 1.57386 1.64956 2.07208 2.33632 2.56756 3.08108 3.17641 3.35459 3.40004 3.59054 3.66088 3.86027 3.90966 3.94382 3.97209 4.02927 4.13186 4.16470 4.17866 4.39469 4.47372 4.52903 4.66949 4.71297 4.73077 4.79492 4.81708 4.93429 4.95359 4.96914 4.98552 5.07359 5.12494 5.18279 5.20023 5.24456 5.37074 5.53660 5.56053 5.75131 6.27816 6.64143 7.19700 7.34405 8.09823 8.31513 9.30340 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009089 B = 0.003563 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.840630 B = 7857.439865 C = 9910.278539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 H 0.036 0.964 4 C -0.122 4.122 5 C 0.155 3.845 6 H 0.086 0.914 7 N -0.728 5.728 8 C -0.235 4.235 9 H 0.086 0.914 10 C -0.075 4.075 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.287 1.287 14 H -0.304 1.304 15 H -0.265 1.265 16 C 0.078 3.922 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.586 6.586 20 C -0.121 4.121 21 C -0.057 4.057 22 C -0.091 4.091 23 C -0.118 4.118 24 C 0.084 3.916 25 F -0.138 7.138 26 C -0.119 4.119 27 C -0.119 4.119 28 C 0.069 3.931 29 F -0.149 7.149 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 -11.540 13.424 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.029 3.971 3 H 0.054 0.946 4 C -0.160 4.160 5 C 0.045 3.955 6 H 0.104 0.896 7 N -0.366 5.366 8 C -0.367 4.367 9 H 0.104 0.896 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.797 3.203 13 H -0.214 1.214 14 H -0.231 1.231 15 H -0.189 1.189 16 C -0.048 4.048 17 N -0.334 5.334 18 C 0.312 3.688 19 O -0.468 6.468 20 C -0.161 4.161 21 C -0.095 4.095 22 C -0.092 4.092 23 C -0.136 4.136 24 C 0.065 3.935 25 F -0.117 7.117 26 C -0.138 4.138 27 C -0.138 4.138 28 C 0.049 3.951 29 F -0.127 7.127 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.463 -11.155 13.618 21.569 hybrid contribution 1.396 0.813 -0.042 1.616 sum -11.067 -10.342 13.576 20.341 Atomic orbital electron populations 1.22005 0.93213 1.02814 1.02325 1.21530 0.95203 0.95111 0.85298 0.94617 1.22973 0.97571 0.99985 0.95503 1.21670 0.86136 0.94463 0.93208 0.89615 1.42553 1.01356 1.05072 1.87635 1.19663 0.84411 0.92308 1.40274 0.89636 1.25530 1.01554 0.95682 1.03990 1.69837 1.29178 1.03543 1.59674 0.85226 0.80251 0.77453 0.77372 1.21439 1.23136 1.18947 1.23295 0.94645 0.87849 0.98962 1.48559 1.51444 1.28663 1.04713 1.20674 0.79747 0.85118 0.83291 1.90623 1.42875 1.29250 1.84024 1.21552 1.02120 1.00845 0.91537 1.20173 1.02247 0.97466 0.89602 1.19708 0.92602 0.98187 0.98680 1.21051 1.01998 0.94782 0.95814 1.17762 0.90604 0.89795 0.95336 1.91520 1.75822 1.61205 1.83115 1.21270 0.91985 0.98785 1.01741 1.21244 1.02345 0.95295 0.94921 1.18022 0.90090 0.90568 0.96383 1.91521 1.75797 1.61838 1.83580 0.93768 0.90186 0.90944 0.90776 0.86795 0.79968 0.94354 0.91962 0.88484 0.89915 0.86100 0.88515 0.91958 0.81948 0.80983 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.11 71.98 0.66 -3.10 16 2 C 0.13 4.18 3.45 45.35 0.16 4.34 16 3 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.12 -3.43 6.06 31.79 0.19 -3.24 16 5 C 0.16 5.27 3.69 46.38 0.17 5.44 16 6 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 7 N -0.73 -34.34 5.27 -316.37 -1.67 -36.01 16 8 C -0.23 -12.24 9.98 84.03 0.84 -11.40 16 9 H 0.09 4.14 7.83 -2.91 -0.02 4.12 16 10 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 11 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 12 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 16 C 0.08 2.33 6.38 86.85 0.55 2.89 16 17 N -0.60 -19.73 3.06 -788.02 -2.41 -22.14 16 18 C 0.52 17.89 7.64 87.66 0.67 18.56 16 19 O -0.59 -23.53 15.03 -3.02 -0.05 -23.57 16 20 C -0.12 -3.28 4.69 29.85 0.14 -3.14 16 21 C -0.06 -1.45 4.41 29.85 0.13 -1.32 16 22 C -0.09 -1.98 5.14 -19.82 -0.10 -2.08 16 23 C -0.12 -2.06 9.66 22.31 0.22 -1.84 16 24 C 0.08 1.41 7.30 22.37 0.16 1.58 16 25 F -0.14 -2.41 17.27 44.97 0.78 -1.63 16 26 C -0.12 -1.71 10.02 22.31 0.22 -1.49 16 27 C -0.12 -2.06 10.02 22.31 0.22 -1.84 16 28 C 0.07 1.61 7.24 22.37 0.16 1.77 16 29 F -0.15 -4.44 16.56 44.97 0.74 -3.69 16 30 H 0.04 1.34 6.89 -2.39 -0.02 1.32 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.11 2.34 7.84 -2.38 -0.02 2.32 16 35 H 0.37 19.71 7.82 -92.71 -0.72 18.98 16 36 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 2.53 7.85 -2.39 -0.02 2.51 16 40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.10 2.22 8.01 -2.39 -0.02 2.20 16 42 H 0.06 1.90 7.75 -2.39 -0.02 1.88 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.17 1.46 8.06 -2.92 -0.02 1.44 16 45 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -70.31 382.34 4.85 -65.46 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.29 Total: 32.25 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.86 Total: 1.38 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.80 Total: -117.37 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.52 Total: -5.33 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.31 4.85 -65.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989830768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.273 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds