Wall clock time and date at job start Tue Mar 31 2020 21:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87460 * 2 1 4 4 C 1.54333 * 109.88321 * 121.01397 * 2 1 3 5 5 C 1.55155 * 102.94027 * 97.38038 * 4 2 1 6 6 H 1.09008 * 111.00062 * 277.39044 * 5 4 2 7 7 N 1.46497 * 111.00393 * 153.57948 * 5 4 2 8 8 C 1.36935 * 120.00298 * 154.99786 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54905 * 101.58278 * 35.50319 * 5 4 2 17 17 N 1.47022 * 110.01294 * 238.90088 * 2 1 3 18 18 C 1.34772 * 125.64737 * 59.49505 * 17 2 1 19 19 O 1.21278 * 119.99942 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99814 * 180.02562 * 18 17 2 21 21 C 1.52997 * 109.46991 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47232 * 179.97438 * 21 20 18 23 23 C 1.38196 * 120.00286 * 264.72537 * 22 21 20 24 24 C 1.38436 * 119.99824 * 179.81242 * 23 22 21 25 25 F 1.35104 * 119.99766 * 180.21028 * 24 23 22 26 26 C 1.38462 * 120.00117 * 0.41639 * 24 23 22 27 27 C 1.38161 * 120.00037 * 359.84128 * 26 24 23 28 28 C 1.38434 * 119.99678 * 85.00125 * 22 21 20 29 29 F 1.35097 * 120.00076 * 359.95713 * 28 22 21 30 30 H 1.08997 * 109.47041 * 298.98389 * 1 2 3 31 31 H 1.08999 * 109.47100 * 58.98431 * 1 2 3 32 32 H 1.09003 * 109.46880 * 178.98839 * 1 2 3 33 33 H 1.09003 * 110.71894 * 339.01834 * 4 2 1 34 34 H 1.08997 * 110.72058 * 215.74683 * 4 2 1 35 35 H 0.96992 * 120.00013 * 334.99685 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09000 * 110.36602 * 81.82886 * 16 5 4 38 38 H 1.09007 * 110.36480 * 204.15064 * 16 5 4 39 39 H 1.09003 * 109.47322 * 300.00085 * 20 18 17 40 40 H 1.08997 * 109.46937 * 60.00480 * 20 18 17 41 41 H 1.09003 * 109.47113 * 300.00160 * 21 20 18 42 42 H 1.09003 * 109.47261 * 59.99789 * 21 20 18 43 43 H 1.08003 * 120.00301 * 359.97438 * 23 22 21 44 44 H 1.08006 * 120.00281 * 179.80907 * 26 24 23 45 45 H 1.08005 * 120.00229 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 1.2439 5 6 2.3557 -2.1673 0.6946 6 1 1.4504 -2.7737 0.6623 7 7 3.3979 -2.8264 1.4855 8 6 3.4640 -4.1935 1.5275 9 1 2.7475 -4.7859 0.9778 10 6 4.4518 -4.8181 2.2765 11 7 5.3247 -4.0962 2.9468 12 14 4.5414 -6.6830 2.3343 13 1 4.7443 -7.2116 0.9614 14 1 5.6765 -7.0976 3.1975 15 1 3.2746 -7.2225 2.8903 16 6 2.8619 -1.8472 -0.7340 17 7 2.0332 -0.7135 -1.1829 18 6 1.7796 -0.3850 -2.4651 19 8 1.0819 0.5739 -2.7188 20 6 2.3631 -1.2094 -3.5837 21 6 1.9253 -0.6264 -4.9288 22 6 2.5093 -1.4503 -6.0473 23 6 3.6937 -1.0633 -6.6451 24 6 4.2321 -1.8223 -7.6700 25 9 5.3921 -1.4462 -8.2515 26 6 3.5795 -2.9646 -8.1020 27 6 2.3927 -3.3486 -7.5080 28 6 1.8564 -2.5918 -6.4799 29 9 0.6962 -2.9676 -5.8987 30 1 -0.3633 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 1.2909 -0.7886 2.0202 34 1 2.9641 -0.2792 1.6204 35 1 4.0412 -2.2945 1.9795 36 1 5.2779 -3.1278 2.9171 37 1 3.9135 -1.5619 -0.7088 38 1 2.7166 -2.7062 -1.3893 39 1 3.4511 -1.1930 -3.5178 40 1 2.0095 -2.2370 -3.5003 41 1 0.8374 -0.6425 -4.9949 42 1 2.2792 0.4012 -5.0119 43 1 4.2006 -0.1701 -6.3109 44 1 3.9980 -3.5551 -8.9037 45 1 1.8835 -4.2394 -7.8452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989830769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:22 Heat of formation + Delta-G solvation = -96.891152 kcal Electronic energy + Delta-G solvation = -28871.083894 eV Core-core repulsion = 24524.310988 eV Total energy + Delta-G solvation = -4346.772906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.25111 -49.19718 -40.16065 -39.28589 -37.60708 -34.59943 -34.30899 -31.98395 -31.38081 -30.70235 -29.63262 -28.15208 -25.59896 -25.33589 -23.69718 -23.32284 -22.24131 -21.34707 -20.21599 -18.76395 -17.99629 -17.60536 -17.58505 -17.55689 -16.81452 -16.19995 -15.80655 -15.69282 -15.49804 -14.87571 -14.74400 -14.54524 -14.45784 -13.84172 -13.75943 -13.69603 -13.37978 -13.16303 -13.04460 -12.97653 -12.86549 -12.55805 -12.45611 -11.99466 -11.93294 -11.84462 -11.33521 -11.22440 -11.07176 -11.00072 -10.74534 -10.61774 -10.27409 -10.05236 -9.77103 -9.46094 -9.28830 -9.07659 -8.86371 -8.44474 -7.22111 -6.22699 -3.25559 0.56689 0.62972 2.74376 2.92132 3.15807 3.45995 3.48478 3.66277 3.77639 3.83523 4.12684 4.27860 4.51052 4.58391 4.69621 4.73213 4.86436 4.91962 5.04838 5.06266 5.17206 5.33342 5.37310 5.44244 5.46335 5.53957 5.54815 5.56708 5.61560 5.67349 5.75086 5.76475 5.90007 5.92942 5.94046 6.01916 6.09904 6.17391 6.33714 6.41216 6.43089 6.55676 6.71850 7.67713 7.73087 8.28754 8.62761 9.06197 9.92824 10.05890 11.24977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.002980 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.879679 B = 9393.943671 C =11236.622851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.069 0.931 7 N -0.723 5.723 8 C -0.341 4.341 9 H 0.067 0.933 10 C -0.039 4.039 11 N -0.939 5.939 12 Si 1.079 2.921 13 H -0.294 1.294 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.072 3.928 17 N -0.609 5.609 18 C 0.529 3.471 19 O -0.552 6.552 20 C -0.132 4.132 21 C -0.064 4.064 22 C -0.084 4.084 23 C -0.122 4.122 24 C 0.091 3.909 25 F -0.135 7.135 26 C -0.130 4.130 27 C -0.122 4.122 28 C 0.093 3.907 29 F -0.130 7.130 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.370 0.630 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 5.872 -19.624 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.087 0.913 7 N -0.364 5.364 8 C -0.472 4.472 9 H 0.085 0.915 10 C -0.237 4.237 11 N -0.583 5.583 12 Si 0.909 3.091 13 H -0.221 1.221 14 H -0.209 1.209 15 H -0.221 1.221 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.431 6.431 20 C -0.172 4.172 21 C -0.102 4.102 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.072 3.928 25 F -0.114 7.114 26 C -0.149 4.149 27 C -0.141 4.141 28 C 0.074 3.926 29 F -0.108 7.108 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.696 4.925 -19.266 20.686 hybrid contribution -0.502 1.307 -0.579 1.515 sum -6.198 6.231 -19.845 21.704 Atomic orbital electron populations 1.22127 0.94950 1.02322 1.02454 1.21474 0.94449 0.95857 0.84695 0.91279 1.23050 1.01623 0.97183 0.96037 1.21205 0.92600 0.91140 0.88357 0.91302 1.42328 1.33772 1.04272 1.56020 1.20053 1.15016 0.82574 1.29564 0.91514 1.25805 0.94358 1.06931 0.96604 1.70900 1.37360 1.06468 1.43587 0.83258 0.75917 0.73960 0.75925 1.22127 1.20948 1.22121 1.23483 0.94795 0.87221 0.99869 1.48637 1.50094 1.30890 1.04635 1.20160 0.80635 0.84852 0.82542 1.90653 1.39521 1.29447 1.83486 1.21606 1.02689 1.00668 0.92250 1.20311 1.01969 0.98528 0.89391 1.19824 0.95042 0.95152 0.98529 1.20971 0.95847 1.01213 0.96034 1.17661 0.84053 0.95782 0.95301 1.91529 1.45779 1.91046 1.83037 1.20991 0.95631 0.96433 1.01811 1.21010 0.96372 1.00755 0.95958 1.17574 0.84331 0.95406 0.95321 1.91535 1.45458 1.90776 1.83072 0.91962 0.91404 0.92468 0.90111 0.90823 0.79602 0.93287 0.91389 0.91175 0.88617 0.88648 0.89315 0.89280 0.83572 0.83717 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.06 37.16 0.34 -1.85 16 2 C 0.14 2.03 3.49 -66.95 -0.23 1.79 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.15 6.14 -24.89 -0.15 -2.31 16 5 C 0.18 3.30 3.71 -65.79 -0.24 3.06 16 6 H 0.07 1.32 8.09 -51.92 -0.42 0.90 16 7 N -0.72 -16.75 5.24 -51.35 -0.27 -17.02 16 8 C -0.34 -9.02 9.96 -15.06 -0.15 -9.17 16 9 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 10 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 11 N -0.94 -27.80 13.70 55.49 0.76 -27.04 16 12 Si 1.08 24.80 29.92 -169.99 -5.09 19.72 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.07 1.19 6.38 -2.53 -0.02 1.17 16 17 N -0.61 -9.26 3.08 -163.01 -0.50 -9.76 16 18 C 0.53 7.89 7.63 -10.99 -0.08 7.81 16 19 O -0.55 -9.46 14.90 5.56 0.08 -9.38 16 20 C -0.13 -1.57 4.69 -27.88 -0.13 -1.70 16 21 C -0.06 -0.69 4.41 -27.89 -0.12 -0.81 16 22 C -0.08 -0.82 5.14 -104.57 -0.54 -1.36 16 23 C -0.12 -1.09 9.66 -39.52 -0.38 -1.47 16 24 C 0.09 0.82 7.30 -39.43 -0.29 0.54 16 25 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 26 C -0.13 -0.99 10.02 -39.53 -0.40 -1.39 16 27 C -0.12 -0.97 10.02 -39.52 -0.40 -1.37 16 28 C 0.09 0.92 7.24 -39.42 -0.29 0.64 16 29 F -0.13 -1.46 16.57 2.25 0.04 -1.43 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.01 6.77 -51.93 -0.35 0.65 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 34 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 35 H 0.37 8.86 6.60 -40.82 -0.27 8.59 16 36 H 0.26 7.41 6.77 -40.82 -0.28 7.14 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.13 7.48 -51.92 -0.39 0.74 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 41 H 0.09 1.03 7.75 -51.93 -0.40 0.63 16 42 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 43 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -30.93 380.21 -8.73 -39.66 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.34 Total: 8.39 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.18 Total: -7.58 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.01 Total: -53.82 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.93 -8.73 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989830769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.229 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds