Wall clock time and date at job start Tue Mar 31 2020 21:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87460 * 2 1 4 4 C 1.54333 * 109.88321 * 121.01397 * 2 1 3 5 5 C 1.55155 * 102.94027 * 97.38038 * 4 2 1 6 6 H 1.09008 * 111.00062 * 277.39044 * 5 4 2 7 7 N 1.46497 * 111.00393 * 153.57948 * 5 4 2 8 8 C 1.36935 * 120.00298 * 154.99786 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54905 * 101.58278 * 35.50319 * 5 4 2 17 17 N 1.47022 * 110.01294 * 238.90088 * 2 1 3 18 18 C 1.34772 * 125.64737 * 59.49505 * 17 2 1 19 19 O 1.21278 * 119.99942 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99814 * 180.02562 * 18 17 2 21 21 C 1.52997 * 109.46991 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47232 * 179.97438 * 21 20 18 23 23 C 1.38196 * 120.00286 * 264.72537 * 22 21 20 24 24 C 1.38436 * 119.99824 * 179.81242 * 23 22 21 25 25 F 1.35104 * 119.99766 * 180.21028 * 24 23 22 26 26 C 1.38462 * 120.00117 * 0.41639 * 24 23 22 27 27 C 1.38161 * 120.00037 * 359.84128 * 26 24 23 28 28 C 1.38434 * 119.99678 * 85.00125 * 22 21 20 29 29 F 1.35097 * 120.00076 * 359.95713 * 28 22 21 30 30 H 1.08997 * 109.47041 * 298.98389 * 1 2 3 31 31 H 1.08999 * 109.47100 * 58.98431 * 1 2 3 32 32 H 1.09003 * 109.46880 * 178.98839 * 1 2 3 33 33 H 1.09003 * 110.71894 * 339.01834 * 4 2 1 34 34 H 1.08997 * 110.72058 * 215.74683 * 4 2 1 35 35 H 0.96992 * 120.00013 * 334.99685 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09000 * 110.36602 * 81.82886 * 16 5 4 38 38 H 1.09007 * 110.36480 * 204.15064 * 16 5 4 39 39 H 1.09003 * 109.47322 * 300.00085 * 20 18 17 40 40 H 1.08997 * 109.46937 * 60.00480 * 20 18 17 41 41 H 1.09003 * 109.47113 * 300.00160 * 21 20 18 42 42 H 1.09003 * 109.47261 * 59.99789 * 21 20 18 43 43 H 1.08003 * 120.00301 * 359.97438 * 23 22 21 44 44 H 1.08006 * 120.00281 * 179.80907 * 26 24 23 45 45 H 1.08005 * 120.00229 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 1.2439 5 6 2.3557 -2.1673 0.6946 6 1 1.4504 -2.7737 0.6623 7 7 3.3979 -2.8264 1.4855 8 6 3.4640 -4.1935 1.5275 9 1 2.7475 -4.7859 0.9778 10 6 4.4518 -4.8181 2.2765 11 7 5.3247 -4.0962 2.9468 12 14 4.5414 -6.6830 2.3343 13 1 4.7443 -7.2116 0.9614 14 1 5.6765 -7.0976 3.1975 15 1 3.2746 -7.2225 2.8903 16 6 2.8619 -1.8472 -0.7340 17 7 2.0332 -0.7135 -1.1829 18 6 1.7796 -0.3850 -2.4651 19 8 1.0819 0.5739 -2.7188 20 6 2.3631 -1.2094 -3.5837 21 6 1.9253 -0.6264 -4.9288 22 6 2.5093 -1.4503 -6.0473 23 6 3.6937 -1.0633 -6.6451 24 6 4.2321 -1.8223 -7.6700 25 9 5.3921 -1.4462 -8.2515 26 6 3.5795 -2.9646 -8.1020 27 6 2.3927 -3.3486 -7.5080 28 6 1.8564 -2.5918 -6.4799 29 9 0.6962 -2.9676 -5.8987 30 1 -0.3633 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 1.2909 -0.7886 2.0202 34 1 2.9641 -0.2792 1.6204 35 1 4.0412 -2.2945 1.9795 36 1 5.2779 -3.1278 2.9171 37 1 3.9135 -1.5619 -0.7088 38 1 2.7166 -2.7062 -1.3893 39 1 3.4511 -1.1930 -3.5178 40 1 2.0095 -2.2370 -3.5003 41 1 0.8374 -0.6425 -4.9949 42 1 2.2792 0.4012 -5.0119 43 1 4.2006 -0.1701 -6.3109 44 1 3.9980 -3.5551 -8.9037 45 1 1.8835 -4.2394 -7.8452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989830769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:22 Heat of formation + Delta-G solvation = -112.846099 kcal Electronic energy + Delta-G solvation = -28871.775753 eV Core-core repulsion = 24524.310988 eV Total energy + Delta-G solvation = -4347.464764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98918 -49.96554 -41.38598 -40.03590 -38.92235 -36.34186 -35.22711 -33.33959 -32.93379 -31.44283 -30.45756 -29.77716 -26.83541 -26.32080 -25.57446 -24.03414 -23.34897 -22.38951 -21.53445 -19.98447 -19.53118 -18.74703 -18.42939 -18.30133 -17.88693 -17.14360 -17.02335 -16.81068 -16.39013 -16.16702 -16.07102 -15.54492 -15.42405 -15.29104 -14.86546 -14.66066 -14.58101 -14.52881 -14.14013 -13.91683 -13.79981 -13.66246 -13.47554 -13.22663 -13.14655 -12.74338 -12.68416 -12.65906 -12.29411 -12.16124 -12.09900 -11.98085 -11.86103 -11.66884 -11.22218 -11.06471 -10.84339 -10.16422 -9.74757 -9.58489 -9.16345 -8.37410 -5.34370 -0.13637 -0.02093 1.54079 1.62124 1.70506 1.86557 1.89445 2.30938 2.72209 3.06052 3.14564 3.25511 3.38140 3.51053 3.60621 3.75834 3.81710 3.85461 3.93447 3.99443 4.01807 4.09706 4.14643 4.25673 4.36518 4.39774 4.47680 4.61676 4.65337 4.71529 4.72326 4.82707 4.92426 4.94876 4.95366 4.98196 5.04774 5.07913 5.15849 5.17038 5.25769 5.39786 5.62177 5.73948 6.47570 6.51434 7.05274 7.09069 7.96846 8.07447 9.14089 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.002980 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.879679 B = 9393.943671 C =11236.622851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.172 3.828 6 H 0.062 0.938 7 N -0.735 5.735 8 C -0.334 4.334 9 H 0.070 0.930 10 C -0.097 4.097 11 N -0.974 5.974 12 Si 1.123 2.877 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.279 1.279 16 C 0.088 3.912 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.574 6.574 20 C -0.126 4.126 21 C -0.056 4.056 22 C -0.092 4.092 23 C -0.124 4.124 24 C 0.080 3.920 25 F -0.141 7.141 26 C -0.121 4.121 27 C -0.118 4.118 28 C 0.076 3.924 29 F -0.142 7.142 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.364 0.636 36 H 0.246 0.754 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 5.263 -21.068 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.080 0.920 7 N -0.375 5.375 8 C -0.465 4.465 9 H 0.088 0.912 10 C -0.289 4.289 11 N -0.622 5.622 12 Si 0.948 3.052 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.205 1.205 16 C -0.038 4.038 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.454 6.454 20 C -0.166 4.166 21 C -0.094 4.094 22 C -0.093 4.093 23 C -0.142 4.142 24 C 0.061 3.939 25 F -0.120 7.120 26 C -0.140 4.140 27 C -0.136 4.136 28 C 0.056 3.944 29 F -0.121 7.121 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.197 0.803 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.174 0.826 44 H 0.188 0.812 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.198 4.344 -20.752 22.089 hybrid contribution -0.421 1.567 -0.197 1.634 sum -6.620 5.911 -20.949 22.751 Atomic orbital electron populations 1.22058 0.93974 1.02081 1.02941 1.21536 0.95178 0.95842 0.84030 0.90811 1.22949 1.02025 0.95031 0.96636 1.21347 0.91092 0.92353 0.89087 0.91960 1.42436 1.34754 1.03470 1.56886 1.20368 1.14041 0.84158 1.27963 0.91222 1.27072 0.94538 1.10370 0.96902 1.70998 1.39153 1.06094 1.45930 0.82680 0.75982 0.69944 0.76556 1.20270 1.22202 1.20496 1.23106 0.94404 0.87808 0.98514 1.48665 1.49999 1.30523 1.05137 1.20655 0.80098 0.84708 0.82783 1.90644 1.40512 1.30556 1.83710 1.21613 1.03165 1.00122 0.91694 1.20184 1.01214 0.98827 0.89185 1.19709 0.95552 0.95371 0.98691 1.21075 0.95564 1.01614 0.95983 1.17849 0.84093 0.96432 0.95545 1.91517 1.46144 1.91189 1.83134 1.21289 0.95044 0.95846 1.01805 1.21268 0.96305 1.01064 0.94971 1.17856 0.84265 0.96017 0.96220 1.91503 1.46195 1.90927 1.83432 0.89822 0.92628 0.92943 0.89011 0.90830 0.80331 0.94316 0.92066 0.90777 0.87434 0.88461 0.90563 0.89068 0.82577 0.81166 0.81297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.06 71.98 0.65 -3.28 16 2 C 0.14 3.83 3.49 45.34 0.16 3.99 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.13 -3.78 6.14 31.79 0.20 -3.58 16 5 C 0.17 6.20 3.71 46.38 0.17 6.37 16 6 H 0.06 2.34 8.09 -2.38 -0.02 2.32 16 7 N -0.73 -33.95 5.24 -316.38 -1.66 -35.60 16 8 C -0.33 -17.50 9.96 84.03 0.84 -16.67 16 9 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 10 C -0.10 -5.34 5.50 84.86 0.47 -4.87 16 11 N -0.97 -58.38 13.70 21.65 0.30 -58.08 16 12 Si 1.12 49.56 29.92 68.60 2.05 51.61 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 16 C 0.09 2.80 6.38 86.85 0.55 3.36 16 17 N -0.61 -17.93 3.08 -788.04 -2.43 -20.36 16 18 C 0.53 15.29 7.63 87.66 0.67 15.96 16 19 O -0.57 -19.33 14.90 -3.02 -0.05 -19.37 16 20 C -0.13 -2.88 4.69 29.85 0.14 -2.74 16 21 C -0.06 -1.17 4.41 29.85 0.13 -1.04 16 22 C -0.09 -1.71 5.14 -19.83 -0.10 -1.81 16 23 C -0.12 -2.06 9.66 22.31 0.22 -1.84 16 24 C 0.08 1.31 7.30 22.37 0.16 1.47 16 25 F -0.14 -2.56 17.27 44.97 0.78 -1.78 16 26 C -0.12 -1.56 10.02 22.30 0.22 -1.33 16 27 C -0.12 -1.61 10.02 22.31 0.22 -1.39 16 28 C 0.08 1.41 7.24 22.37 0.16 1.57 16 29 F -0.14 -3.11 16.57 44.97 0.74 -2.36 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.59 6.77 -2.39 -0.02 1.57 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 2.52 7.83 -2.39 -0.02 2.50 16 34 H 0.07 2.20 8.00 -2.39 -0.02 2.18 16 35 H 0.36 17.63 6.60 -92.71 -0.61 17.01 16 36 H 0.25 14.60 6.77 -92.71 -0.63 13.97 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 2.31 7.48 -2.38 -0.02 2.29 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.10 2.21 7.85 -2.39 -0.02 2.19 16 41 H 0.08 1.77 7.75 -2.39 -0.02 1.75 16 42 H 0.09 1.82 8.01 -2.39 -0.02 1.81 16 43 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 45 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -65.77 380.21 5.14 -60.63 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.54 Total: 31.16 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.86 Total: -5.84 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -3.79 Total: -114.05 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.52 Total: -4.14 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Total: -65.77 5.14 -60.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989830769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.219 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds