Wall clock time and date at job start Tue Mar 31 2020 21:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54908 * 110.36468 * 237.76251 * 2 1 3 5 5 C 1.55153 * 101.58185 * 204.03834 * 4 2 1 6 6 H 1.09001 * 110.72516 * 277.14041 * 5 4 2 7 7 N 1.46505 * 110.71857 * 153.86749 * 5 4 2 8 8 C 1.36941 * 119.99997 * 155.00772 * 7 5 4 9 9 H 1.07996 * 119.99729 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00132 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99519 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00118 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47030 * 59.99688 * 12 10 8 14 14 H 1.48499 * 109.47081 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47280 * 299.99859 * 12 10 8 16 16 C 1.54327 * 102.93934 * 35.50719 * 5 4 2 17 17 N 1.47011 * 107.27207 * 337.80325 * 16 5 4 18 18 C 1.34777 * 125.64898 * 178.97857 * 17 16 5 19 19 O 1.21285 * 119.99958 * 179.97438 * 18 17 16 20 20 C 1.50695 * 120.00142 * 359.95973 * 18 17 16 21 21 C 1.52998 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.50707 * 109.46982 * 179.97438 * 21 20 18 23 23 C 1.38206 * 120.00037 * 100.00020 * 22 21 20 24 24 C 1.38428 * 120.00143 * 179.97438 * 23 22 21 25 25 F 1.35101 * 119.99964 * 179.97438 * 24 23 22 26 26 C 1.38466 * 119.99756 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00472 * 359.95782 * 26 24 23 28 28 C 1.38430 * 119.99826 * 279.72164 * 22 21 20 29 29 F 1.35090 * 120.00256 * 0.02768 * 28 22 21 30 30 H 1.09003 * 109.47009 * 180.70485 * 1 2 3 31 31 H 1.09005 * 109.46863 * 300.69936 * 1 2 3 32 32 H 1.08992 * 109.47214 * 60.69577 * 1 2 3 33 33 H 1.08998 * 111.00755 * 322.11966 * 4 2 1 34 34 H 1.09001 * 111.00240 * 85.92951 * 4 2 1 35 35 H 0.97002 * 120.00132 * 335.00062 * 7 5 4 36 36 H 0.97009 * 119.99182 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.88254 * 97.22607 * 16 5 4 38 38 H 1.09002 * 109.88094 * 218.23022 * 16 5 4 39 39 H 1.09001 * 109.47012 * 299.99683 * 20 18 17 40 40 H 1.08995 * 109.47457 * 59.99726 * 20 18 17 41 41 H 1.08996 * 109.47482 * 299.99744 * 21 20 18 42 42 H 1.09001 * 109.47218 * 59.99910 * 21 20 18 43 43 H 1.08001 * 119.99929 * 359.95468 * 23 22 21 44 44 H 1.08005 * 119.99644 * 179.97438 * 26 24 23 45 45 H 1.07991 * 120.00218 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 -1.2284 5 6 3.4788 -1.1965 -0.7365 6 1 4.1942 -0.3858 -0.8750 7 7 3.9272 -2.4087 -1.4263 8 6 5.2656 -2.6701 -1.5511 9 1 5.9906 -1.9825 -1.1414 10 6 5.6905 -3.8184 -2.2051 11 7 4.8068 -4.6562 -2.7048 12 14 7.5162 -4.1747 -2.3760 13 1 8.1278 -4.2829 -1.0271 14 1 7.7047 -5.4526 -3.1085 15 1 8.1675 -3.0720 -3.1277 16 6 3.2523 -1.4745 0.7645 17 7 2.0454 -0.7381 1.1675 18 6 1.5007 -0.7373 2.4003 19 8 0.4992 -0.0896 2.6204 20 6 2.1359 -1.5414 3.5052 21 6 1.3263 -1.3686 4.7919 22 6 1.9612 -2.1733 5.8967 23 6 2.7696 -1.5503 6.8286 24 6 3.3524 -2.2893 7.8437 25 9 4.1430 -1.6803 8.7544 26 6 3.1249 -3.6527 7.9258 27 6 2.3156 -4.2754 6.9951 28 6 1.7300 -3.5355 5.9816 29 9 0.9357 -4.1437 5.0737 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8961 33 1 1.4521 -1.6476 -1.4414 34 1 2.1373 -0.1249 -2.1009 35 1 3.2760 -3.0262 -1.7945 36 1 5.1038 -5.4589 -3.1616 37 1 3.1061 -2.5426 0.9257 38 1 4.1107 -1.1271 1.3395 39 1 2.1518 -2.5947 3.2251 40 1 3.1559 -1.1933 3.6678 41 1 1.3100 -0.3155 5.0723 42 1 0.3064 -1.7171 4.6291 43 1 2.9470 -0.4869 6.7646 44 1 3.5799 -4.2293 8.7176 45 1 2.1379 -5.3386 7.0594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989830770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:25 Heat of formation + Delta-G solvation = -94.990371 kcal Electronic energy + Delta-G solvation = -28873.451269 eV Core-core repulsion = 24526.760787 eV Total energy + Delta-G solvation = -4346.690482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.23227 -49.14453 -40.09529 -39.24069 -37.45240 -34.41566 -34.12851 -31.90262 -31.41863 -30.66411 -29.55646 -28.43357 -25.50704 -25.16542 -23.85100 -23.29632 -22.10962 -21.09542 -20.29418 -18.64556 -17.94478 -17.54383 -17.52964 -17.31347 -16.58284 -16.25479 -16.04160 -15.58971 -15.34241 -14.93623 -14.68692 -14.54568 -14.22265 -13.86492 -13.71153 -13.41531 -13.37774 -13.24665 -12.94728 -12.73401 -12.69490 -12.51699 -12.09552 -11.92331 -11.84918 -11.74220 -11.33347 -11.23721 -11.15742 -11.03830 -10.80725 -10.69164 -10.35200 -10.09744 -9.78753 -9.57768 -9.35160 -9.02879 -8.82196 -8.33538 -7.14155 -5.88699 -3.20021 0.60211 0.66469 2.81619 2.96537 3.23365 3.37207 3.42350 3.43086 3.80614 3.88002 4.16664 4.32166 4.48315 4.58186 4.76133 4.76811 4.93592 4.97440 5.08836 5.18649 5.22795 5.38563 5.46424 5.48549 5.54397 5.56074 5.60516 5.64546 5.66545 5.71098 5.82693 5.86648 5.94959 5.98138 6.08878 6.11493 6.19516 6.40054 6.44505 6.46228 6.50176 6.68708 6.83183 7.58666 7.81713 8.28445 8.37539 9.40540 9.94139 10.28955 11.33097 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.003014 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.070008 B = 9289.118820 C =11223.572487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.072 3.928 17 N -0.608 5.608 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.084 4.084 23 C -0.122 4.122 24 C 0.090 3.910 25 F -0.136 7.136 26 C -0.130 4.130 27 C -0.122 4.122 28 C 0.094 3.906 29 F -0.129 7.129 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 5.446 18.594 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.352 5.352 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.055 4.055 17 N -0.342 5.342 18 C 0.319 3.681 19 O -0.432 6.432 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.085 4.085 23 C -0.141 4.141 24 C 0.071 3.929 25 F -0.115 7.115 26 C -0.149 4.149 27 C -0.141 4.141 28 C 0.075 3.925 29 F -0.107 7.107 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.817 5.740 18.728 20.740 hybrid contribution 1.039 -0.698 -0.197 1.267 sum -5.777 5.043 18.531 20.055 Atomic orbital electron populations 1.22134 0.94331 1.02538 1.02847 1.21856 0.94750 0.95278 0.84843 0.91072 1.23183 0.97900 1.00341 0.96277 1.21163 0.93232 0.91107 0.88490 0.91413 1.42379 1.05260 1.22277 1.65301 1.19215 0.83315 1.04668 1.31050 0.90983 1.24772 0.97729 0.97317 1.00573 1.69657 1.32413 1.13409 1.42141 0.86261 0.84806 0.77345 0.77704 1.21138 1.21615 1.21112 1.23339 0.85141 0.96646 1.00330 1.48648 1.28618 1.48127 1.08814 1.20130 0.83928 0.81692 0.82378 1.90612 1.25675 1.44761 1.82112 1.21608 1.00748 1.01961 0.92997 1.20310 0.99338 1.00217 0.90263 1.19844 0.98484 0.92377 0.97836 1.20963 0.97907 1.01302 0.93915 1.17655 0.94358 0.91214 0.89698 1.91523 1.71636 1.83365 1.64940 1.20985 1.00222 0.92926 1.00766 1.21019 0.97869 1.01174 0.94039 1.17585 0.94461 0.90629 0.89863 1.91542 1.71114 1.83058 1.65016 0.92824 0.89994 0.92413 0.90553 0.90204 0.77837 0.93245 0.90890 0.92261 0.88609 0.88712 0.89333 0.89314 0.83598 0.83762 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.66 37.16 0.32 -1.93 16 2 C 0.14 1.98 3.76 -66.42 -0.25 1.73 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.15 6.13 -24.59 -0.15 -2.30 16 5 C 0.17 3.13 3.61 -66.09 -0.24 2.89 16 6 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 7 N -0.71 -16.57 5.15 -51.65 -0.27 -16.84 16 8 C -0.25 -6.54 9.96 -15.06 -0.15 -6.69 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.88 13.06 55.49 0.72 -26.16 16 12 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.07 1.17 6.24 -3.07 -0.02 1.15 16 17 N -0.61 -9.30 3.24 -163.05 -0.53 -9.83 16 18 C 0.53 7.93 7.63 -10.99 -0.08 7.85 16 19 O -0.55 -9.33 13.68 5.55 0.08 -9.25 16 20 C -0.13 -1.61 4.87 -27.89 -0.14 -1.75 16 21 C -0.06 -0.69 4.36 -27.88 -0.12 -0.81 16 22 C -0.08 -0.84 5.14 -104.56 -0.54 -1.38 16 23 C -0.12 -1.10 9.65 -39.52 -0.38 -1.48 16 24 C 0.09 0.82 7.30 -39.43 -0.29 0.53 16 25 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 26 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 27 C -0.12 -1.02 10.02 -39.52 -0.40 -1.42 16 28 C 0.09 0.97 7.24 -39.42 -0.29 0.69 16 29 F -0.13 -1.54 16.65 2.25 0.04 -1.50 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.25 6.00 -51.93 -0.31 0.94 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.39 9.69 7.76 -40.82 -0.32 9.38 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.91 7.96 -51.93 -0.41 0.49 16 42 H 0.09 1.05 7.89 -51.93 -0.41 0.64 16 43 H 0.15 1.08 8.04 -52.49 -0.42 0.66 16 44 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -29.75 380.96 -8.88 -38.63 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.47 Total: 8.72 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.21 Total: -4.62 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.07 Total: -52.82 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.75 -8.88 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989830770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.358 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds