Wall clock time and date at job start Tue Mar 31 2020 21:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54908 * 110.36468 * 237.76251 * 2 1 3 5 5 C 1.55153 * 101.58185 * 204.03834 * 4 2 1 6 6 H 1.09001 * 110.72516 * 277.14041 * 5 4 2 7 7 N 1.46505 * 110.71857 * 153.86749 * 5 4 2 8 8 C 1.36941 * 119.99997 * 155.00772 * 7 5 4 9 9 H 1.07996 * 119.99729 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00132 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99519 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00118 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47030 * 59.99688 * 12 10 8 14 14 H 1.48499 * 109.47081 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47280 * 299.99859 * 12 10 8 16 16 C 1.54327 * 102.93934 * 35.50719 * 5 4 2 17 17 N 1.47011 * 107.27207 * 337.80325 * 16 5 4 18 18 C 1.34777 * 125.64898 * 178.97857 * 17 16 5 19 19 O 1.21285 * 119.99958 * 179.97438 * 18 17 16 20 20 C 1.50695 * 120.00142 * 359.95973 * 18 17 16 21 21 C 1.52998 * 109.47127 * 180.02562 * 20 18 17 22 22 C 1.50707 * 109.46982 * 179.97438 * 21 20 18 23 23 C 1.38206 * 120.00037 * 100.00020 * 22 21 20 24 24 C 1.38428 * 120.00143 * 179.97438 * 23 22 21 25 25 F 1.35101 * 119.99964 * 179.97438 * 24 23 22 26 26 C 1.38466 * 119.99756 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00472 * 359.95782 * 26 24 23 28 28 C 1.38430 * 119.99826 * 279.72164 * 22 21 20 29 29 F 1.35090 * 120.00256 * 0.02768 * 28 22 21 30 30 H 1.09003 * 109.47009 * 180.70485 * 1 2 3 31 31 H 1.09005 * 109.46863 * 300.69936 * 1 2 3 32 32 H 1.08992 * 109.47214 * 60.69577 * 1 2 3 33 33 H 1.08998 * 111.00755 * 322.11966 * 4 2 1 34 34 H 1.09001 * 111.00240 * 85.92951 * 4 2 1 35 35 H 0.97002 * 120.00132 * 335.00062 * 7 5 4 36 36 H 0.97009 * 119.99182 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.88254 * 97.22607 * 16 5 4 38 38 H 1.09002 * 109.88094 * 218.23022 * 16 5 4 39 39 H 1.09001 * 109.47012 * 299.99683 * 20 18 17 40 40 H 1.08995 * 109.47457 * 59.99726 * 20 18 17 41 41 H 1.08996 * 109.47482 * 299.99744 * 21 20 18 42 42 H 1.09001 * 109.47218 * 59.99910 * 21 20 18 43 43 H 1.08001 * 119.99929 * 359.95468 * 23 22 21 44 44 H 1.08005 * 119.99644 * 179.97438 * 26 24 23 45 45 H 1.07991 * 120.00218 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 -1.2284 5 6 3.4788 -1.1965 -0.7365 6 1 4.1942 -0.3858 -0.8750 7 7 3.9272 -2.4087 -1.4263 8 6 5.2656 -2.6701 -1.5511 9 1 5.9906 -1.9825 -1.1414 10 6 5.6905 -3.8184 -2.2051 11 7 4.8068 -4.6562 -2.7048 12 14 7.5162 -4.1747 -2.3760 13 1 8.1278 -4.2829 -1.0271 14 1 7.7047 -5.4526 -3.1085 15 1 8.1675 -3.0720 -3.1277 16 6 3.2523 -1.4745 0.7645 17 7 2.0454 -0.7381 1.1675 18 6 1.5007 -0.7373 2.4003 19 8 0.4992 -0.0896 2.6204 20 6 2.1359 -1.5414 3.5052 21 6 1.3263 -1.3686 4.7919 22 6 1.9612 -2.1733 5.8967 23 6 2.7696 -1.5503 6.8286 24 6 3.3524 -2.2893 7.8437 25 9 4.1430 -1.6803 8.7544 26 6 3.1249 -3.6527 7.9258 27 6 2.3156 -4.2754 6.9951 28 6 1.7300 -3.5355 5.9816 29 9 0.9357 -4.1437 5.0737 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8961 33 1 1.4521 -1.6476 -1.4414 34 1 2.1373 -0.1249 -2.1009 35 1 3.2760 -3.0262 -1.7945 36 1 5.1038 -5.4589 -3.1616 37 1 3.1061 -2.5426 0.9257 38 1 4.1107 -1.1271 1.3395 39 1 2.1518 -2.5947 3.2251 40 1 3.1559 -1.1933 3.6678 41 1 1.3100 -0.3155 5.0723 42 1 0.3064 -1.7171 4.6291 43 1 2.9470 -0.4869 6.7646 44 1 3.5799 -4.2293 8.7176 45 1 2.1379 -5.3386 7.0594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989830770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:24 Heat of formation + Delta-G solvation = -110.105445 kcal Electronic energy + Delta-G solvation = -28874.106708 eV Core-core repulsion = 24526.760787 eV Total energy + Delta-G solvation = -4347.345921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.98301 -49.95101 -41.31007 -40.00524 -38.76465 -35.97473 -35.19730 -33.28949 -32.95179 -31.42369 -30.41811 -30.04081 -26.69824 -26.27275 -25.61121 -24.01484 -23.13817 -22.15011 -21.69867 -19.87908 -19.22035 -18.68854 -18.31976 -18.28878 -17.74166 -17.43245 -16.93741 -16.64170 -16.43227 -16.36118 -15.66914 -15.42093 -15.38418 -15.29737 -14.92013 -14.68431 -14.42168 -14.31024 -14.12145 -13.78961 -13.64000 -13.51726 -13.36548 -13.23786 -13.04178 -12.89822 -12.77192 -12.64797 -12.36982 -12.18450 -12.14652 -12.06924 -11.96032 -11.70845 -11.52446 -11.00254 -10.62090 -10.14014 -9.61085 -9.56955 -9.06279 -7.93711 -5.23952 -0.12277 -0.00490 1.51416 1.52922 1.58991 1.61330 1.98393 2.32837 2.57960 3.08255 3.16673 3.32977 3.37951 3.58084 3.64760 3.84546 3.89144 3.91067 3.96954 4.03191 4.13702 4.17107 4.21076 4.32551 4.46858 4.52296 4.56589 4.66705 4.73344 4.75395 4.81697 4.88660 4.93791 4.97509 4.99424 5.07712 5.12707 5.17179 5.19395 5.26437 5.33323 5.54170 5.55618 5.75356 6.26832 6.56969 7.16035 7.34490 8.06227 8.29799 9.29078 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.003014 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.070008 B = 9289.118820 C =11223.572487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.165 3.835 6 H 0.074 0.926 7 N -0.725 5.725 8 C -0.244 4.244 9 H 0.082 0.918 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.970 3.030 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.277 1.277 16 C 0.086 3.914 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.571 6.571 20 C -0.127 4.127 21 C -0.056 4.056 22 C -0.092 4.092 23 C -0.121 4.121 24 C 0.081 3.919 25 F -0.140 7.140 26 C -0.122 4.122 27 C -0.120 4.120 28 C 0.073 3.927 29 F -0.144 7.144 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.160 0.840 44 H 0.170 0.830 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 6.464 19.990 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.105 0.895 4 C -0.166 4.166 5 C 0.055 3.945 6 H 0.092 0.908 7 N -0.364 5.364 8 C -0.376 4.376 9 H 0.100 0.900 10 C -0.263 4.263 11 N -0.618 5.618 12 Si 0.799 3.201 13 H -0.203 1.203 14 H -0.226 1.226 15 H -0.203 1.203 16 C -0.040 4.040 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.452 6.452 20 C -0.167 4.167 21 C -0.093 4.093 22 C -0.093 4.093 23 C -0.140 4.140 24 C 0.062 3.938 25 F -0.119 7.119 26 C -0.140 4.140 27 C -0.138 4.138 28 C 0.054 3.946 29 F -0.123 7.123 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.872 6.813 20.159 22.075 hybrid contribution 0.687 -0.940 -0.563 1.294 sum -5.185 5.873 19.596 21.104 Atomic orbital electron populations 1.22043 0.93822 1.01735 1.03393 1.21949 0.95122 0.95704 0.83958 0.89505 1.23086 0.95913 1.00249 0.97374 1.21367 0.94724 0.89333 0.89097 0.90764 1.42520 1.04235 1.23596 1.66012 1.19631 0.84712 1.04136 1.29107 0.89975 1.25526 1.01451 0.97768 1.01519 1.69814 1.34084 1.13934 1.44000 0.85274 0.80455 0.76670 0.77723 1.20309 1.22645 1.20333 1.22956 0.86121 0.95761 0.99138 1.48690 1.28339 1.48089 1.09307 1.20586 0.83615 0.81472 0.82634 1.90607 1.26480 1.45677 1.82403 1.21604 1.01548 1.00972 0.92567 1.20186 0.98382 1.00705 0.90048 1.19740 0.99234 0.92258 0.98043 1.21085 0.97343 1.02061 0.93495 1.17823 0.94493 0.91805 0.89705 1.91516 1.71778 1.83525 1.65067 1.21277 0.99285 0.92625 1.00849 1.21258 0.97196 1.02136 0.93220 1.17907 0.95122 0.91105 0.90481 1.91503 1.71714 1.83323 1.65717 0.94199 0.91152 0.90174 0.91795 0.88640 0.79286 0.94054 0.92763 0.90877 0.89244 0.87127 0.88706 0.90820 0.82234 0.81216 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.66 71.98 0.62 -3.45 16 2 C 0.14 3.72 3.76 45.47 0.17 3.90 16 3 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.13 -3.81 6.13 31.98 0.20 -3.61 16 5 C 0.17 5.82 3.61 46.18 0.17 5.99 16 6 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 7 N -0.72 -33.64 5.15 -317.32 -1.63 -35.27 16 8 C -0.24 -12.56 9.96 84.03 0.84 -11.73 16 9 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 11 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 12 Si 0.97 43.94 29.55 68.60 2.03 45.97 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 C 0.09 2.74 6.24 86.73 0.54 3.28 16 17 N -0.61 -17.99 3.24 -788.16 -2.56 -20.55 16 18 C 0.53 15.37 7.63 87.66 0.67 16.04 16 19 O -0.57 -18.96 13.68 -3.05 -0.04 -19.00 16 20 C -0.13 -2.99 4.87 29.85 0.15 -2.85 16 21 C -0.06 -1.18 4.36 29.85 0.13 -1.05 16 22 C -0.09 -1.75 5.14 -19.82 -0.10 -1.85 16 23 C -0.12 -1.99 9.65 22.31 0.22 -1.78 16 24 C 0.08 1.32 7.30 22.37 0.16 1.48 16 25 F -0.14 -2.48 17.27 44.97 0.78 -1.70 16 26 C -0.12 -1.63 10.02 22.31 0.22 -1.41 16 27 C -0.12 -1.79 10.02 22.31 0.22 -1.57 16 28 C 0.07 1.46 7.24 22.37 0.16 1.62 16 29 F -0.14 -3.46 16.65 44.97 0.75 -2.71 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 2.08 6.00 -2.38 -0.01 2.07 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 34 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.37 19.09 7.76 -92.71 -0.72 18.38 16 36 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 37 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 1.86 7.96 -2.39 -0.02 1.84 16 42 H 0.07 1.77 7.89 -2.39 -0.02 1.75 16 43 H 0.16 2.08 8.04 -2.91 -0.02 2.06 16 44 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.17 1.74 8.06 -2.92 -0.02 1.72 16 Total: -1.00 -63.57 380.96 4.73 -58.84 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.29 Total: 31.48 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.83 Total: -0.32 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -3.91 Total: -112.55 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.04 Total: -19.00 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.53 Total: -4.42 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -63.57 4.73 -58.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989830770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.267 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds