Wall clock time and date at job start Tue Mar 31 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09007 * 111.00472 * 206.42304 * 5 4 2 7 7 N 1.46504 * 111.00182 * 82.57769 * 5 4 2 8 8 C 1.36937 * 119.99711 * 154.99886 * 7 5 4 9 9 H 1.07997 * 120.00447 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99578 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99975 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46690 * 90.00233 * 12 10 8 14 14 H 1.48497 * 109.47351 * 210.00106 * 12 10 8 15 15 H 1.48500 * 109.47177 * 330.00521 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.38260 * 119.99693 * 264.72091 * 22 21 20 24 24 C 1.38210 * 120.06721 * 179.77320 * 23 22 21 25 25 C 1.38258 * 120.07195 * 0.50237 * 24 23 22 26 26 C 1.38365 * 119.99778 * 359.75179 * 25 24 23 27 27 F 1.35106 * 120.03496 * 180.02562 * 26 25 24 28 28 C 1.38366 * 120.00199 * 84.99885 * 22 21 20 29 29 F 1.35095 * 120.03570 * 359.95277 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96999 * 120.00156 * 334.99541 * 7 5 4 36 36 H 0.97001 * 119.99818 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.08000 * 119.96367 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.96239 * 180.23372 * 24 23 22 45 45 H 1.08005 * 120.00117 * 179.76764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 3.4853 -2.4093 1.2828 7 7 4.4675 -0.6458 0.6501 8 6 5.7218 -1.1930 0.7002 9 1 5.8413 -2.2639 0.7726 10 6 6.8396 -0.3712 0.6578 11 7 6.6939 0.9340 0.5700 12 14 8.5507 -1.1174 0.7268 13 1 9.0197 -1.4084 -0.6519 14 1 9.4826 -0.1600 1.3749 15 1 8.5101 -2.3772 1.5120 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 6 3.7679 -1.0370 -6.6253 24 6 4.3002 -1.7963 -7.6502 25 6 3.6231 -2.9104 -8.1107 26 6 2.4138 -3.2691 -7.5420 27 9 1.7518 -4.3578 -7.9911 28 6 1.8822 -2.5101 -6.5100 29 9 0.7019 -2.8587 -5.9529 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 4.3601 0.3160 0.5854 36 1 7.4751 1.5083 0.5400 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 4.2963 -0.1648 -6.2696 44 1 5.2439 -1.5167 -8.0948 45 1 4.0382 -3.5008 -8.9142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989858226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:31 Heat of formation + Delta-G solvation = -96.026500 kcal Electronic energy + Delta-G solvation = -29300.965132 eV Core-core repulsion = 24954.229720 eV Total energy + Delta-G solvation = -4346.735412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.63867 -48.71620 -39.95628 -39.23611 -37.42714 -34.21013 -33.94144 -31.71550 -31.33464 -30.54065 -29.64923 -28.45574 -25.50770 -25.19607 -23.76148 -23.05721 -22.29305 -21.21768 -19.93364 -18.50514 -18.09037 -17.50689 -17.36322 -17.18584 -16.55704 -16.48414 -15.93367 -15.27136 -15.11511 -15.07665 -14.62555 -14.53543 -14.27044 -13.83249 -13.65407 -13.45275 -13.27126 -13.06331 -12.94302 -12.58468 -12.53414 -12.23919 -12.21762 -11.87661 -11.80574 -11.64991 -11.32953 -11.16488 -11.05149 -10.97506 -10.78565 -10.65718 -10.33163 -10.04679 -9.76290 -9.53195 -9.10885 -9.05688 -8.97774 -8.22473 -7.08565 -5.86901 -3.17595 0.68680 0.70598 2.99002 3.07188 3.36042 3.37949 3.41994 3.43793 3.54614 4.12755 4.26112 4.46589 4.49094 4.64824 4.82834 4.85391 5.02417 5.08694 5.14655 5.24403 5.32016 5.48657 5.50804 5.51769 5.56379 5.62326 5.66589 5.68172 5.76473 5.80310 5.87842 5.93270 6.00765 6.06640 6.12602 6.19081 6.21870 6.41128 6.42319 6.50763 6.58540 6.68641 6.81367 7.59796 7.96148 8.30270 8.53039 9.42182 9.97542 10.32327 11.34902 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003369 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.873685 B = 8308.527584 C =10274.751520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.712 5.712 8 C -0.249 4.249 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.068 3.932 17 N -0.599 5.599 18 C 0.532 3.468 19 O -0.555 6.555 20 C -0.131 4.131 21 C -0.065 4.065 22 C -0.083 4.083 23 C -0.095 4.095 24 C -0.097 4.097 25 C -0.133 4.133 26 C 0.066 3.934 27 F -0.131 7.131 28 C 0.068 3.932 29 F -0.126 7.126 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -6.700 -13.121 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.056 3.944 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.380 4.380 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.207 1.207 16 C -0.058 4.058 17 N -0.331 5.331 18 C 0.321 3.679 19 O -0.434 6.434 20 C -0.171 4.171 21 C -0.103 4.103 22 C -0.084 4.084 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.152 4.152 26 C 0.046 3.954 27 F -0.110 7.110 28 C 0.048 3.952 29 F -0.104 7.104 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.220 -6.303 -13.280 17.353 hybrid contribution 0.716 -0.472 -0.059 0.859 sum -8.504 -6.775 -13.339 17.209 Atomic orbital electron populations 1.22131 0.95523 1.01676 1.02393 1.21459 0.93495 0.96730 0.84860 0.90915 1.23083 0.98267 1.00065 0.96434 1.21323 0.87030 0.94417 0.91623 0.90797 1.42340 1.00064 1.05529 1.87190 1.19242 0.83188 0.92040 1.43480 0.90956 1.24763 0.97924 0.95332 1.02436 1.69672 1.29081 1.02160 1.56603 0.86208 0.84498 0.77974 0.77579 1.21680 1.21740 1.20654 1.23472 0.94394 0.86894 1.01015 1.48502 1.51567 1.28549 1.04532 1.20051 0.80213 0.85104 0.82545 1.90647 1.41144 1.28041 1.83551 1.21580 1.03224 1.00014 0.92236 1.20319 1.01957 0.98524 0.89453 1.19975 0.95472 0.94464 0.98510 1.21172 0.94112 1.00435 0.95600 1.21116 1.00091 0.93864 0.96428 1.21085 0.93390 0.99078 1.01636 1.17692 0.93735 0.86941 0.97058 1.91526 1.80123 1.51238 1.88084 1.17561 0.84652 0.96962 0.96024 1.91524 1.43477 1.91478 1.83960 0.92101 0.92952 0.91614 0.89842 0.90827 0.77992 0.93365 0.90260 0.92638 0.88198 0.89233 0.89650 0.88982 0.83865 0.84100 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.10 37.16 0.34 -1.90 16 2 C 0.14 2.23 3.44 -66.96 -0.23 2.00 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.14 -2.12 6.08 -24.90 -0.15 -2.27 16 5 C 0.17 3.00 3.72 -65.78 -0.24 2.76 16 6 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 7 N -0.71 -16.50 5.23 -51.35 -0.27 -16.77 16 8 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 12 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.10 6.41 -2.35 -0.02 1.08 16 17 N -0.60 -10.00 3.08 -162.76 -0.50 -10.50 16 18 C 0.53 9.04 7.64 -10.99 -0.08 8.95 16 19 O -0.55 -10.77 15.02 5.56 0.08 -10.69 16 20 C -0.13 -1.79 4.70 -27.88 -0.13 -1.92 16 21 C -0.06 -0.81 4.41 -27.88 -0.12 -0.93 16 22 C -0.08 -0.93 5.14 -104.57 -0.54 -1.46 16 23 C -0.10 -0.88 9.68 -39.58 -0.38 -1.26 16 24 C -0.10 -0.76 10.04 -39.58 -0.40 -1.16 16 25 C -0.13 -1.13 10.02 -39.53 -0.40 -1.53 16 26 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16 27 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 28 C 0.07 0.82 7.25 -39.37 -0.29 0.53 16 29 F -0.13 -1.68 16.48 2.25 0.04 -1.65 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.04 6.89 -51.93 -0.36 0.68 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.39 9.84 7.86 -40.82 -0.32 9.52 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 1.36 7.50 -51.93 -0.39 0.98 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.37 7.86 -51.92 -0.41 0.96 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 42 H 0.09 1.15 8.01 -51.93 -0.42 0.73 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 45 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -30.83 382.30 -8.80 -39.62 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.47 Total: 9.22 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -3.17 Total: -3.55 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.04 Total: -53.49 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.83 -8.80 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.404 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds