Wall clock time and date at job start Tue Mar 31 2020 21:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87705 * 2 1 4 4 C 1.54319 * 109.88662 * 121.01683 * 2 1 3 5 5 C 1.55158 * 102.94298 * 141.60794 * 4 2 1 6 6 H 1.09007 * 111.00472 * 206.42304 * 5 4 2 7 7 N 1.46504 * 111.00182 * 82.57769 * 5 4 2 8 8 C 1.36937 * 119.99711 * 154.99886 * 7 5 4 9 9 H 1.07997 * 120.00447 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99578 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99975 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46690 * 90.00233 * 12 10 8 14 14 H 1.48497 * 109.47351 * 210.00106 * 12 10 8 15 15 H 1.48500 * 109.47177 * 330.00521 * 12 10 8 16 16 C 1.54904 * 101.58496 * 324.50135 * 5 4 2 17 17 N 1.47023 * 109.88230 * 238.98837 * 2 1 3 18 18 C 1.34779 * 125.65235 * 61.60280 * 17 2 1 19 19 O 1.21282 * 119.99391 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00233 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47180 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.38260 * 119.99693 * 264.72091 * 22 21 20 24 24 C 1.38210 * 120.06721 * 179.77320 * 23 22 21 25 25 C 1.38258 * 120.07195 * 0.50237 * 24 23 22 26 26 C 1.38365 * 119.99778 * 359.75179 * 25 24 23 27 27 F 1.35106 * 120.03496 * 180.02562 * 26 25 24 28 28 C 1.38366 * 120.00199 * 84.99885 * 22 21 20 29 29 F 1.35095 * 120.03570 * 359.95277 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.29616 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.29807 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.29788 * 1 2 3 33 33 H 1.08995 * 110.72377 * 259.97450 * 4 2 1 34 34 H 1.09003 * 110.71729 * 23.06993 * 4 2 1 35 35 H 0.96999 * 120.00156 * 334.99541 * 7 5 4 36 36 H 0.97001 * 119.99818 * 180.02562 * 11 10 8 37 37 H 1.08994 * 110.36903 * 155.84534 * 16 5 4 38 38 H 1.09004 * 110.36365 * 278.17106 * 16 5 4 39 39 H 1.09008 * 109.47238 * 300.00310 * 20 18 17 40 40 H 1.09005 * 109.47018 * 60.00332 * 20 18 17 41 41 H 1.08999 * 109.46704 * 300.00043 * 21 20 18 42 42 H 1.08995 * 109.47110 * 59.99921 * 21 20 18 43 43 H 1.08000 * 119.96367 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.96239 * 180.23372 * 24 23 22 45 45 H 1.08005 * 120.00117 * 179.76764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 3.2876 -1.5133 0.6943 6 1 3.4853 -2.4093 1.2828 7 7 4.4675 -0.6458 0.6501 8 6 5.7218 -1.1930 0.7002 9 1 5.8413 -2.2639 0.7726 10 6 6.8396 -0.3712 0.6578 11 7 6.6939 0.9340 0.5700 12 14 8.5507 -1.1174 0.7268 13 1 9.0197 -1.4084 -0.6519 14 1 9.4826 -0.1600 1.3749 15 1 8.5101 -2.3772 1.5120 16 6 2.8146 -1.8804 -0.7343 17 7 2.0300 -0.7123 -1.1850 18 6 1.8074 -0.3585 -2.4663 19 8 1.1435 0.6250 -2.7171 20 6 2.3842 -1.1843 -3.5872 21 6 1.9860 -0.5697 -4.9306 22 6 2.5623 -1.3959 -6.0514 23 6 3.7679 -1.0370 -6.6253 24 6 4.3002 -1.7963 -7.6502 25 6 3.6231 -2.9104 -8.1107 26 6 2.4138 -3.2691 -7.5420 27 9 1.7518 -4.3578 -7.9911 28 6 1.8822 -2.5101 -6.5100 29 9 0.7019 -2.8587 -5.9529 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5247 -0.8836 33 1 2.3530 -0.0432 2.0201 34 1 1.3040 -1.4414 1.6220 35 1 4.3601 0.3160 0.5854 36 1 7.4751 1.5083 0.5400 37 1 3.6716 -2.0356 -1.3896 38 1 2.1887 -2.7724 -0.7091 39 1 3.4709 -1.2015 -3.5037 40 1 1.9988 -2.2020 -3.5243 41 1 0.8994 -0.5522 -5.0142 42 1 2.3717 0.4478 -4.9932 43 1 4.2963 -0.1648 -6.2696 44 1 5.2439 -1.5167 -8.0948 45 1 4.0382 -3.5008 -8.9142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989858226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:30 Heat of formation + Delta-G solvation = -112.694066 kcal Electronic energy + Delta-G solvation = -29301.687892 eV Core-core repulsion = 24954.229720 eV Total energy + Delta-G solvation = -4347.458172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.52845 -49.61694 -41.25342 -40.07191 -38.80705 -35.79560 -35.12453 -33.19291 -32.83593 -31.29781 -30.61606 -30.08919 -26.75284 -26.24445 -25.64195 -23.83278 -23.39185 -22.31815 -21.31394 -19.82410 -19.24672 -18.94585 -18.35133 -18.24315 -17.64870 -17.45481 -17.25694 -16.60258 -16.25470 -16.02304 -15.79184 -15.68151 -15.45351 -15.32595 -14.95090 -14.76343 -14.57213 -14.18858 -14.03473 -13.74789 -13.64054 -13.41308 -13.20153 -13.11971 -12.93807 -12.87404 -12.74628 -12.67261 -12.24661 -12.19474 -12.15792 -12.12005 -12.02204 -11.61950 -11.47137 -11.02931 -10.80416 -9.90783 -9.77345 -9.63322 -8.96345 -7.91139 -5.20443 -0.08986 -0.04922 1.51288 1.52000 1.60307 1.64741 2.06130 2.39020 2.58723 2.75018 3.25315 3.38664 3.41427 3.61740 3.71793 3.85853 3.89798 3.91560 3.95669 4.06985 4.14502 4.17915 4.20702 4.39048 4.46100 4.51186 4.61813 4.69915 4.77598 4.78853 4.80891 4.90657 4.95464 4.98143 5.04591 5.11788 5.18765 5.18988 5.23342 5.32145 5.36216 5.52273 5.57779 5.75658 6.29467 6.63033 7.18820 7.36332 8.10631 8.33380 9.32109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003369 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.873685 B = 8308.527584 C =10274.751520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.040 0.960 4 C -0.124 4.124 5 C 0.157 3.843 6 H 0.088 0.912 7 N -0.726 5.726 8 C -0.237 4.237 9 H 0.085 0.915 10 C -0.073 4.073 11 N -0.971 5.971 12 Si 0.968 3.032 13 H -0.288 1.288 14 H -0.303 1.303 15 H -0.266 1.266 16 C 0.078 3.922 17 N -0.603 5.603 18 C 0.522 3.478 19 O -0.585 6.585 20 C -0.121 4.121 21 C -0.057 4.057 22 C -0.092 4.092 23 C -0.097 4.097 24 C -0.085 4.085 25 C -0.122 4.122 26 C 0.049 3.951 27 F -0.141 7.141 28 C 0.046 3.954 29 F -0.142 7.142 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.370 0.630 36 H 0.248 0.752 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.156 0.844 44 H 0.176 0.824 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 -8.813 -13.725 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.058 0.942 4 C -0.163 4.163 5 C 0.047 3.953 6 H 0.106 0.894 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.103 0.897 10 C -0.265 4.265 11 N -0.621 5.621 12 Si 0.798 3.202 13 H -0.216 1.216 14 H -0.230 1.230 15 H -0.191 1.191 16 C -0.048 4.048 17 N -0.335 5.335 18 C 0.312 3.688 19 O -0.467 6.467 20 C -0.160 4.160 21 C -0.095 4.095 22 C -0.093 4.093 23 C -0.115 4.115 24 C -0.103 4.103 25 C -0.140 4.140 26 C 0.029 3.971 27 F -0.120 7.120 28 C 0.026 3.974 29 F -0.120 7.120 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.173 0.827 44 H 0.194 0.806 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.759 -8.487 -13.875 18.473 hybrid contribution 0.509 0.169 0.119 0.549 sum -8.251 -8.318 -13.756 18.069 Atomic orbital electron populations 1.22021 0.93618 1.02576 1.02318 1.21512 0.94966 0.95286 0.85317 0.94174 1.23004 0.97729 1.00056 0.95501 1.21632 0.86215 0.94410 0.93057 0.89374 1.42529 1.01080 1.05354 1.87418 1.19681 0.84210 0.92528 1.40438 0.89722 1.25512 1.01481 0.95677 1.03847 1.69839 1.29320 1.03537 1.59419 0.85212 0.80209 0.77333 0.77428 1.21554 1.22983 1.19117 1.23364 0.94588 0.87738 0.99072 1.48647 1.51407 1.28765 1.04707 1.20662 0.79832 0.85018 0.83256 1.90626 1.42584 1.29460 1.84038 1.21544 1.02896 1.00011 0.91585 1.20170 1.01185 0.98547 0.89586 1.19860 0.96412 0.94414 0.98656 1.21431 0.93353 1.00960 0.95767 1.21515 1.00855 0.92703 0.95176 1.21463 0.92009 0.99096 1.01479 1.17968 0.94754 0.86944 0.97433 1.91497 1.80541 1.51722 1.88191 1.17808 0.84615 0.97910 0.97061 1.91474 1.44463 1.91718 1.84370 0.90095 0.91371 0.93851 0.90721 0.87172 0.79862 0.94284 0.91513 0.89070 0.88108 0.88057 0.91012 0.89457 0.82676 0.80635 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.10 71.98 0.65 -3.30 16 2 C 0.13 4.22 3.44 45.34 0.16 4.37 16 3 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -3.53 6.08 31.78 0.19 -3.34 16 5 C 0.16 5.31 3.72 46.38 0.17 5.48 16 6 H 0.09 2.77 8.09 -2.38 -0.02 2.75 16 7 N -0.73 -33.48 5.23 -316.37 -1.66 -35.14 16 8 C -0.24 -12.06 9.96 84.03 0.84 -11.22 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 11 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 12 Si 0.97 43.82 29.55 68.60 2.03 45.85 16 13 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 C 0.08 2.34 6.41 86.79 0.56 2.89 16 17 N -0.60 -19.81 3.08 -787.25 -2.42 -22.23 16 18 C 0.52 17.91 7.64 87.66 0.67 18.58 16 19 O -0.59 -23.47 15.02 -3.04 -0.05 -23.52 16 20 C -0.12 -3.29 4.70 29.85 0.14 -3.15 16 21 C -0.06 -1.45 4.41 29.85 0.13 -1.32 16 22 C -0.09 -2.01 5.14 -19.83 -0.10 -2.12 16 23 C -0.10 -1.62 9.68 22.27 0.22 -1.41 16 24 C -0.08 -1.05 10.04 22.27 0.22 -0.83 16 25 C -0.12 -1.74 10.02 22.30 0.22 -1.51 16 26 C 0.05 1.03 7.31 22.41 0.16 1.19 16 27 F -0.14 -3.28 17.18 44.97 0.77 -2.51 16 28 C 0.05 1.10 7.25 22.41 0.16 1.26 16 29 F -0.14 -3.88 16.48 44.97 0.74 -3.14 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.04 1.36 6.89 -2.38 -0.02 1.35 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.37 7.85 -2.39 -0.02 2.35 16 35 H 0.37 19.30 7.86 -92.71 -0.73 18.57 16 36 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 37 H 0.07 2.20 7.50 -2.39 -0.02 2.18 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.10 2.73 7.86 -2.38 -0.02 2.71 16 40 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.07 1.99 7.75 -2.39 -0.02 1.97 16 42 H 0.09 2.24 8.01 -2.39 -0.02 2.23 16 43 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -68.79 382.30 4.85 -63.94 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.28 Total: 32.05 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 4.87 Total: 2.09 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.79 Total: -114.77 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.51 Total: -5.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.79 4.85 -63.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.756 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds