Wall clock time and date at job start Tue Mar 31 2020 21:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 6 6 H 1.08997 * 111.00659 * 82.56898 * 5 4 2 7 7 N 1.46503 * 111.00638 * 206.42930 * 5 4 2 8 8 C 1.36942 * 119.99590 * 205.00205 * 7 5 4 9 9 H 1.07993 * 120.00141 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99678 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99893 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99790 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47478 * 90.00424 * 12 10 8 14 14 H 1.48510 * 109.46710 * 210.00116 * 12 10 8 15 15 H 1.48496 * 109.47390 * 330.00082 * 12 10 8 16 16 C 1.54914 * 101.57928 * 324.49777 * 5 4 2 17 17 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 18 18 C 1.34773 * 125.64711 * 300.52153 * 17 2 1 19 19 O 1.21282 * 120.00056 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99998 * 179.97438 * 18 17 2 21 21 C 1.52994 * 109.47092 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47092 * 180.02562 * 21 20 18 23 23 C 1.38258 * 119.99583 * 100.00351 * 22 21 20 24 24 C 1.38212 * 120.06893 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.07029 * 0.02562 * 24 23 22 26 26 C 1.38374 * 120.00103 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.03563 * 180.02562 * 26 25 24 28 28 C 1.38366 * 120.00297 * 279.73170 * 22 21 20 29 29 F 1.35101 * 120.03223 * 359.97438 * 28 22 21 30 30 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 31 31 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 32 32 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 33 33 H 1.09004 * 110.71745 * 20.99118 * 4 2 1 34 34 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 35 35 H 0.96996 * 119.99884 * 24.99006 * 7 5 4 36 36 H 0.97001 * 119.99825 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.36623 * 155.84512 * 16 5 4 38 38 H 1.09001 * 110.36874 * 278.05773 * 16 5 4 39 39 H 1.08992 * 109.47116 * 300.00626 * 20 18 17 40 40 H 1.09004 * 109.46801 * 60.00288 * 20 18 17 41 41 H 1.08992 * 109.47673 * 300.00312 * 21 20 18 42 42 H 1.09004 * 109.47040 * 60.00461 * 21 20 18 43 43 H 1.07997 * 119.96566 * 0.02562 * 23 22 21 44 44 H 1.07994 * 119.96872 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.99863 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3556 -2.1674 -0.6946 6 1 1.4503 -2.7735 -0.6617 7 7 3.3979 -2.8265 -1.4855 8 6 3.4638 -4.1937 -1.5275 9 1 2.7478 -4.7859 -0.9772 10 6 4.4511 -4.8182 -2.2773 11 7 4.5148 -6.1322 -2.3172 12 14 5.6891 -3.7936 -3.2295 13 1 6.8671 -3.5148 -2.3692 14 1 6.1241 -4.5397 -4.4377 15 1 5.0607 -2.5120 -3.6388 16 6 2.8618 -1.8473 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.7793 -0.3853 2.4652 19 8 1.0805 0.5729 2.7189 20 6 2.3627 -1.2097 3.5838 21 6 1.9245 -0.6270 4.9288 22 6 2.5085 -1.4509 6.0474 23 6 3.6394 -1.0126 6.7111 24 6 4.1759 -1.7668 7.7375 25 6 3.5832 -2.9614 8.1024 26 6 2.4512 -3.4029 7.4401 27 9 1.8712 -4.5698 7.7965 28 6 1.9097 -2.6432 6.4139 29 9 0.8011 -3.0692 5.7698 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3632 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 1.2908 -0.7885 -2.0201 34 1 2.9624 -0.2775 -1.6222 35 1 4.0411 -2.2945 -1.9795 36 1 5.2049 -6.5686 -2.8409 37 1 2.7164 -2.7062 1.3893 38 1 3.9140 -1.5639 0.7092 39 1 2.0095 -2.2374 3.5001 40 1 3.4506 -1.1929 3.5181 41 1 2.2781 0.4006 5.0122 42 1 0.8366 -0.6434 4.9948 43 1 4.1035 -0.0796 6.4277 44 1 5.0591 -1.4227 8.2551 45 1 4.0032 -3.5496 8.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989858227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:34 Heat of formation + Delta-G solvation = -91.455511 kcal Electronic energy + Delta-G solvation = -29007.810388 eV Core-core repulsion = 24661.273189 eV Total energy + Delta-G solvation = -4346.537199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.66708 -48.74485 -40.17281 -39.34199 -37.62562 -34.45643 -34.20228 -31.94634 -31.52231 -30.62199 -29.79118 -28.85111 -25.61672 -25.36309 -23.64231 -23.13526 -22.23511 -21.25688 -20.24683 -18.78798 -18.15631 -17.80090 -17.56852 -17.30096 -16.70832 -16.50451 -15.89332 -15.47335 -15.16275 -15.12862 -15.05877 -14.57110 -14.22224 -13.80867 -13.75874 -13.67197 -13.38887 -13.07244 -12.97414 -12.84206 -12.67667 -12.52992 -12.35240 -12.06778 -11.92282 -11.88594 -11.58189 -11.40880 -11.21028 -11.11912 -10.87326 -10.69587 -10.40654 -10.10199 -9.75558 -9.69019 -9.19541 -9.08975 -9.04123 -8.45580 -7.44809 -5.88702 -3.27291 0.61414 0.62299 2.74607 2.95971 3.16242 3.29226 3.31680 3.38279 3.48582 4.07313 4.15907 4.35588 4.47884 4.51402 4.68477 4.73522 4.85141 4.92827 5.01161 5.08029 5.12868 5.28379 5.37673 5.39980 5.46471 5.49976 5.52908 5.54700 5.65134 5.72956 5.74410 5.82293 5.84936 5.91212 5.98128 6.02351 6.07761 6.15241 6.31863 6.41541 6.43118 6.54860 6.69110 7.71382 7.85388 8.28342 8.30151 9.06114 9.78089 9.95953 11.28848 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.002986 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.302672 B = 9376.339087 C =10985.128593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.142 4.142 5 C 0.179 3.821 6 H 0.076 0.924 7 N -0.736 5.736 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.072 3.928 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.134 4.134 21 C -0.064 4.064 22 C -0.086 4.086 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.132 4.132 26 C 0.069 3.931 27 F -0.129 7.129 28 C 0.071 3.929 29 F -0.124 7.124 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 12.531 18.417 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.094 0.906 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.049 3.951 27 F -0.107 7.107 28 C 0.050 3.950 29 F -0.102 7.102 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.549 12.696 18.602 22.666 hybrid contribution 0.808 0.056 -0.762 1.112 sum -1.741 12.752 17.840 21.998 Atomic orbital electron populations 1.22134 0.94891 1.02449 1.02468 1.21471 0.94526 0.95831 0.84629 0.91250 1.23067 1.01720 0.97090 0.96207 1.21239 0.92605 0.91193 0.88239 0.90561 1.42665 1.34166 1.04457 1.56393 1.19080 1.12843 0.80528 1.26030 0.88981 1.24684 0.98796 0.95300 0.99816 1.69698 1.35991 1.07013 1.44754 0.86577 0.82143 0.79770 0.80170 1.20953 1.21591 1.20206 1.23441 0.94781 0.87458 0.99748 1.48624 1.50162 1.30886 1.04653 1.20158 0.80594 0.84804 0.82512 1.90654 1.39420 1.29516 1.83477 1.21618 1.02708 1.00772 0.92255 1.20306 1.01951 0.98458 0.89408 1.19945 0.96338 0.93696 0.98764 1.21094 0.94546 1.00607 0.95346 1.21089 0.99974 0.93592 0.96995 1.21107 0.94692 0.98115 1.01165 1.17722 0.95611 0.84237 0.97544 1.91542 1.83561 1.44727 1.90887 1.17588 0.87247 0.95281 0.94855 1.91548 1.49258 1.89472 1.79914 0.92334 0.91394 0.91971 0.89903 0.90866 0.80230 0.92853 0.90780 0.91289 0.88576 0.88540 0.89174 0.89456 0.84114 0.84169 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.06 37.16 0.34 -1.78 16 2 C 0.14 1.92 3.49 -66.95 -0.23 1.69 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.03 6.14 -24.90 -0.15 -2.18 16 5 C 0.18 3.12 3.71 -65.78 -0.24 2.88 16 6 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 7 N -0.74 -15.93 5.05 -51.35 -0.26 -16.19 16 8 C -0.26 -6.74 10.44 -15.06 -0.16 -6.90 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -28.03 13.97 55.49 0.78 -27.25 16 12 Si 0.88 20.93 27.73 -169.99 -4.71 16.22 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 16 C 0.07 1.11 6.39 -2.53 -0.02 1.10 16 17 N -0.61 -8.87 3.08 -163.01 -0.50 -9.37 16 18 C 0.53 7.66 7.63 -10.99 -0.08 7.58 16 19 O -0.55 -9.20 14.89 5.56 0.08 -9.12 16 20 C -0.13 -1.55 4.69 -27.88 -0.13 -1.69 16 21 C -0.06 -0.66 4.36 -27.88 -0.12 -0.79 16 22 C -0.09 -0.84 5.14 -104.57 -0.54 -1.37 16 23 C -0.10 -0.72 9.67 -39.58 -0.38 -1.10 16 24 C -0.10 -0.63 10.04 -39.58 -0.40 -1.03 16 25 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 26 C 0.07 0.73 7.31 -39.37 -0.29 0.45 16 27 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 28 C 0.07 0.80 7.25 -39.37 -0.29 0.52 16 29 F -0.12 -1.64 16.57 2.25 0.04 -1.60 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 34 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 35 H 0.36 7.74 5.63 -40.82 -0.23 7.51 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 1.16 7.48 -51.93 -0.39 0.77 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.16 7.85 -51.93 -0.41 0.75 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.87 7.96 -51.93 -0.41 0.45 16 42 H 0.09 1.02 7.89 -51.93 -0.41 0.61 16 43 H 0.14 0.73 8.04 -52.49 -0.42 0.31 16 44 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -31.57 378.78 -8.44 -40.00 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.41 Total: 6.96 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -3.19 Total: -3.85 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.01 Total: -52.81 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.57 -8.44 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.453 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds