Wall clock time and date at job start Tue Mar 31 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 6 6 H 1.08997 * 111.00659 * 82.56898 * 5 4 2 7 7 N 1.46503 * 111.00638 * 206.42930 * 5 4 2 8 8 C 1.36942 * 119.99590 * 205.00205 * 7 5 4 9 9 H 1.07993 * 120.00141 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99678 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99893 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99790 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47478 * 90.00424 * 12 10 8 14 14 H 1.48510 * 109.46710 * 210.00116 * 12 10 8 15 15 H 1.48496 * 109.47390 * 330.00082 * 12 10 8 16 16 C 1.54914 * 101.57928 * 324.49777 * 5 4 2 17 17 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 18 18 C 1.34773 * 125.64711 * 300.52153 * 17 2 1 19 19 O 1.21282 * 120.00056 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99998 * 179.97438 * 18 17 2 21 21 C 1.52994 * 109.47092 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47092 * 180.02562 * 21 20 18 23 23 C 1.38258 * 119.99583 * 100.00351 * 22 21 20 24 24 C 1.38212 * 120.06893 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.07029 * 0.02562 * 24 23 22 26 26 C 1.38374 * 120.00103 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.03563 * 180.02562 * 26 25 24 28 28 C 1.38366 * 120.00297 * 279.73170 * 22 21 20 29 29 F 1.35101 * 120.03223 * 359.97438 * 28 22 21 30 30 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 31 31 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 32 32 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 33 33 H 1.09004 * 110.71745 * 20.99118 * 4 2 1 34 34 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 35 35 H 0.96996 * 119.99884 * 24.99006 * 7 5 4 36 36 H 0.97001 * 119.99825 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.36623 * 155.84512 * 16 5 4 38 38 H 1.09001 * 110.36874 * 278.05773 * 16 5 4 39 39 H 1.08992 * 109.47116 * 300.00626 * 20 18 17 40 40 H 1.09004 * 109.46801 * 60.00288 * 20 18 17 41 41 H 1.08992 * 109.47673 * 300.00312 * 21 20 18 42 42 H 1.09004 * 109.47040 * 60.00461 * 21 20 18 43 43 H 1.07997 * 119.96566 * 0.02562 * 23 22 21 44 44 H 1.07994 * 119.96872 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.99863 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3556 -2.1674 -0.6946 6 1 1.4503 -2.7735 -0.6617 7 7 3.3979 -2.8265 -1.4855 8 6 3.4638 -4.1937 -1.5275 9 1 2.7478 -4.7859 -0.9772 10 6 4.4511 -4.8182 -2.2773 11 7 4.5148 -6.1322 -2.3172 12 14 5.6891 -3.7936 -3.2295 13 1 6.8671 -3.5148 -2.3692 14 1 6.1241 -4.5397 -4.4377 15 1 5.0607 -2.5120 -3.6388 16 6 2.8618 -1.8473 0.7341 17 7 2.0331 -0.7136 1.1829 18 6 1.7793 -0.3853 2.4652 19 8 1.0805 0.5729 2.7189 20 6 2.3627 -1.2097 3.5838 21 6 1.9245 -0.6270 4.9288 22 6 2.5085 -1.4509 6.0474 23 6 3.6394 -1.0126 6.7111 24 6 4.1759 -1.7668 7.7375 25 6 3.5832 -2.9614 8.1024 26 6 2.4512 -3.4029 7.4401 27 9 1.8712 -4.5698 7.7965 28 6 1.9097 -2.6432 6.4139 29 9 0.8011 -3.0692 5.7698 30 1 -0.3633 -1.0275 0.0126 31 1 -0.3632 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 1.2908 -0.7885 -2.0201 34 1 2.9624 -0.2775 -1.6222 35 1 4.0411 -2.2945 -1.9795 36 1 5.2049 -6.5686 -2.8409 37 1 2.7164 -2.7062 1.3893 38 1 3.9140 -1.5639 0.7092 39 1 2.0095 -2.2374 3.5001 40 1 3.4506 -1.1929 3.5181 41 1 2.2781 0.4006 5.0122 42 1 0.8366 -0.6434 4.9948 43 1 4.1035 -0.0796 6.4277 44 1 5.0591 -1.4227 8.2551 45 1 4.0032 -3.5496 8.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989858227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:33 Heat of formation + Delta-G solvation = -109.235609 kcal Electronic energy + Delta-G solvation = -29008.581391 eV Core-core repulsion = 24661.273189 eV Total energy + Delta-G solvation = -4347.308202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.53071 -49.62409 -41.33931 -40.06459 -38.88481 -36.11255 -35.12771 -33.53260 -32.94448 -31.28661 -30.65109 -30.38320 -26.79208 -26.32535 -25.38390 -23.82267 -23.27640 -22.36677 -21.57621 -20.00608 -19.67489 -18.95041 -18.33468 -18.28171 -17.66177 -17.38772 -17.17224 -16.66471 -16.47071 -16.03374 -15.84011 -15.74807 -15.43395 -15.28876 -14.83708 -14.66293 -14.56642 -14.51626 -14.15865 -13.95738 -13.79789 -13.53971 -13.36093 -13.19913 -13.09970 -12.92077 -12.83237 -12.72188 -12.28632 -12.17199 -12.13574 -12.08727 -11.91264 -11.82284 -11.46101 -11.08128 -10.82802 -9.89704 -9.76156 -9.71066 -9.34201 -8.01397 -5.37683 -0.07681 -0.03440 1.41881 1.44948 1.52343 1.58647 1.94819 2.39866 2.50332 2.78139 3.20293 3.28303 3.35016 3.52245 3.72798 3.74971 3.82332 3.86813 3.92311 4.03558 4.10100 4.16671 4.22158 4.32341 4.40555 4.44963 4.51319 4.62558 4.69218 4.78718 4.81660 4.88512 4.93882 4.99864 5.00820 5.06529 5.13360 5.20413 5.21200 5.31323 5.32746 5.45848 5.77395 5.77751 6.21632 6.51980 7.06731 7.12560 7.80129 8.00364 9.19576 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.002986 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.302672 B = 9376.339087 C =10985.128593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.169 3.831 6 H 0.060 0.940 7 N -0.736 5.736 8 C -0.236 4.236 9 H 0.057 0.943 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.954 3.046 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.084 3.916 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.573 6.573 20 C -0.129 4.129 21 C -0.056 4.056 22 C -0.094 4.094 23 C -0.090 4.090 24 C -0.084 4.084 25 C -0.126 4.126 26 C 0.042 3.958 27 F -0.145 7.145 28 C 0.039 3.961 29 F -0.146 7.146 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.371 0.629 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.170 0.830 44 H 0.180 0.820 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 15.615 18.991 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.098 0.902 4 C -0.167 4.167 5 C 0.059 3.941 6 H 0.078 0.922 7 N -0.379 5.379 8 C -0.367 4.367 9 H 0.075 0.925 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.781 3.219 13 H -0.203 1.203 14 H -0.228 1.228 15 H -0.170 1.170 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.319 3.681 19 O -0.454 6.454 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.144 4.144 26 C 0.022 3.978 27 F -0.124 7.124 28 C 0.019 3.981 29 F -0.125 7.125 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.205 0.795 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.188 0.812 44 H 0.198 0.802 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.519 15.843 19.203 24.900 hybrid contribution 0.089 -0.884 -0.831 1.217 sum -0.430 14.959 18.372 23.695 Atomic orbital electron populations 1.22084 0.94482 1.01869 1.02912 1.21573 0.94857 0.96167 0.84022 0.90161 1.22988 1.02716 0.94367 0.96602 1.21372 0.90973 0.92642 0.89145 0.92190 1.42549 1.35367 1.02653 1.57289 1.19003 1.11103 0.82553 1.24029 0.92490 1.25502 1.01459 0.96374 1.01733 1.69890 1.37360 1.09322 1.46651 0.85436 0.79457 0.79004 0.78026 1.20276 1.22758 1.17020 1.23117 0.95087 0.87751 0.98202 1.48653 1.50068 1.30505 1.05148 1.20590 0.80096 0.84638 0.82814 1.90644 1.40355 1.30658 1.83726 1.21625 1.03597 0.99655 0.91945 1.20198 1.00814 0.99193 0.89126 1.19954 0.97376 0.93097 0.99098 1.21491 0.93181 1.01452 0.94652 1.21566 1.00348 0.92269 0.96021 1.21491 0.93246 0.98733 1.00935 1.18114 0.97045 0.84167 0.98507 1.91489 1.84104 1.45712 1.91107 1.17993 0.87492 0.96665 0.95977 1.91478 1.50575 1.89894 1.80538 0.93342 0.92858 0.89659 0.88709 0.89583 0.79509 0.93319 0.91444 0.90629 0.89575 0.86669 0.87893 0.91526 0.81246 0.80224 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.06 71.98 0.65 -3.20 16 2 C 0.14 3.49 3.49 45.34 0.16 3.65 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.13 -3.33 6.14 31.78 0.20 -3.13 16 5 C 0.17 5.72 3.71 46.38 0.17 5.89 16 6 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 7 N -0.74 -30.94 5.05 -316.38 -1.60 -32.54 16 8 C -0.24 -12.61 10.44 84.03 0.88 -11.73 16 9 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 10 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 11 N -0.98 -61.02 13.97 21.65 0.30 -60.72 16 12 Si 0.95 42.67 27.73 68.60 1.90 44.58 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.25 -9.66 6.52 99.48 0.65 -9.01 16 16 C 0.08 2.53 6.39 86.86 0.55 3.09 16 17 N -0.61 -16.97 3.08 -788.02 -2.43 -19.40 16 18 C 0.53 14.82 7.63 87.66 0.67 15.49 16 19 O -0.57 -18.71 14.89 -3.03 -0.05 -18.75 16 20 C -0.13 -2.91 4.69 29.85 0.14 -2.77 16 21 C -0.06 -1.13 4.36 29.85 0.13 -1.00 16 22 C -0.09 -1.74 5.14 -19.83 -0.10 -1.84 16 23 C -0.09 -1.03 9.67 22.27 0.22 -0.82 16 24 C -0.08 -0.76 10.04 22.27 0.22 -0.53 16 25 C -0.13 -1.67 10.02 22.31 0.22 -1.45 16 26 C 0.04 0.89 7.31 22.41 0.16 1.05 16 27 F -0.15 -3.68 17.18 44.97 0.77 -2.90 16 28 C 0.04 0.91 7.25 22.41 0.16 1.07 16 29 F -0.15 -4.22 16.57 44.97 0.75 -3.48 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.49 6.76 -2.39 -0.02 1.48 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 2.27 7.83 -2.39 -0.02 2.25 16 34 H 0.09 2.07 8.01 -2.39 -0.02 2.05 16 35 H 0.37 14.71 5.63 -92.71 -0.52 14.18 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.07 2.12 7.48 -2.39 -0.02 2.10 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 39 H 0.09 2.15 7.85 -2.39 -0.02 2.13 16 40 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.10 1.80 7.96 -2.39 -0.02 1.78 16 42 H 0.07 1.62 7.89 -2.38 -0.02 1.60 16 43 H 0.17 0.98 8.04 -2.91 -0.02 0.96 16 44 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 45 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -71.40 378.78 4.98 -66.42 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.43 Total: 25.86 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.90 Total: 0.93 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.72 Total: -112.65 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.52 Total: -6.38 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.90 Total: 44.58 kcal Total: -71.40 4.98 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.817 kcal (2) G-P(sol) polarization free energy of solvation -71.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds