Wall clock time and date at job start Tue Mar 31 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32176 * 2 1 4 4 C 1.54908 * 110.37000 * 122.23910 * 2 1 3 5 5 C 1.55148 * 101.58440 * 155.95709 * 4 2 1 6 6 H 1.09004 * 110.72168 * 83.03600 * 5 4 2 7 7 N 1.46497 * 110.72351 * 206.13556 * 5 4 2 8 8 C 1.36935 * 120.00298 * 205.00001 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54325 * 102.94206 * 324.49843 * 5 4 2 17 17 N 1.47019 * 107.27137 * 22.19274 * 16 5 4 18 18 C 1.34780 * 125.64859 * 181.02474 * 17 16 5 19 19 O 1.21288 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.50693 * 120.00245 * 0.03579 * 18 17 16 21 21 C 1.53001 * 109.47473 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.46995 * 180.02562 * 21 20 18 23 23 C 1.38257 * 119.99800 * 264.72131 * 22 21 20 24 24 C 1.38216 * 120.07130 * 179.77165 * 23 22 21 25 25 C 1.38255 * 120.06559 * 0.51045 * 24 23 22 26 26 C 1.38368 * 120.00181 * 359.74499 * 25 24 23 27 27 F 1.35105 * 120.03595 * 180.02562 * 26 25 24 28 28 C 1.38369 * 120.00068 * 85.00609 * 22 21 20 29 29 F 1.35093 * 120.03415 * 359.94829 * 28 22 21 30 30 H 1.09003 * 109.47026 * 297.75644 * 1 2 3 31 31 H 1.08998 * 109.47301 * 57.76128 * 1 2 3 32 32 H 1.09001 * 109.47229 * 177.76185 * 1 2 3 33 33 H 1.09001 * 111.00203 * 37.88374 * 4 2 1 34 34 H 1.08997 * 111.00381 * 274.03695 * 4 2 1 35 35 H 0.96992 * 120.00013 * 24.99901 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09009 * 109.88162 * 141.60563 * 16 5 4 38 38 H 1.08997 * 109.88679 * 262.77244 * 16 5 4 39 39 H 1.09000 * 109.47655 * 300.00643 * 20 18 17 40 40 H 1.09007 * 109.46622 * 60.00185 * 20 18 17 41 41 H 1.08994 * 109.47249 * 300.00241 * 21 20 18 42 42 H 1.09001 * 109.46707 * 60.00187 * 21 20 18 43 43 H 1.08003 * 119.96365 * 0.02818 * 23 22 21 44 44 H 1.08002 * 119.96732 * 180.27956 * 24 23 22 45 45 H 1.08004 * 119.99584 * 179.76828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7747 1.2283 5 6 3.4789 -1.1965 0.7364 6 1 4.1949 -0.3869 0.8776 7 7 3.9273 -2.4087 1.4260 8 6 5.2657 -2.6701 1.5508 9 1 5.9907 -1.9828 1.1405 10 6 5.6906 -3.8185 2.2047 11 7 4.8071 -4.6564 2.7043 12 14 7.5163 -4.1753 2.3743 13 1 8.1685 -3.0727 3.1255 14 1 7.7050 -5.4533 3.1069 15 1 8.1270 -4.2840 1.0251 16 6 3.2523 -1.4744 -0.7646 17 7 2.0453 -0.7380 -1.1676 18 6 1.5006 -0.7372 -2.4004 19 8 0.4990 -0.0894 -2.6204 20 6 2.1357 -1.5411 -3.5054 21 6 1.3261 -1.3684 -4.7921 22 6 1.9610 -2.1729 -5.8969 23 6 2.8464 -1.5693 -6.7705 24 6 3.4332 -2.3069 -7.7814 25 6 3.1279 -3.6474 -7.9276 26 6 2.2380 -4.2531 -7.0582 27 9 1.9395 -5.5631 -7.2002 28 6 1.6532 -3.5143 -6.0406 29 9 0.7845 -4.1036 -5.1903 30 1 -0.3633 0.4786 0.9094 31 1 -0.3634 0.5482 -0.8692 32 1 -0.3634 -1.0269 -0.0401 33 1 1.4523 -1.6477 1.4412 34 1 2.1380 -0.1248 2.1007 35 1 3.2762 -3.0262 1.7942 36 1 3.8591 -4.4712 2.6159 37 1 4.1094 -1.1244 -1.3400 38 1 3.1061 -2.5424 -0.9260 39 1 3.1557 -1.1930 -3.6680 40 1 2.1516 -2.5945 -3.2252 41 1 0.3063 -1.7169 -4.6292 42 1 1.3097 -0.3151 -5.0723 43 1 3.0830 -0.5213 -6.6603 44 1 4.1281 -1.8348 -8.4601 45 1 3.5842 -4.2218 -8.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989858228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:36 Heat of formation + Delta-G solvation = -93.380444 kcal Electronic energy + Delta-G solvation = -29019.063951 eV Core-core repulsion = 24672.443281 eV Total energy + Delta-G solvation = -4346.620670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.67630 -48.75395 -40.16583 -39.34229 -37.54021 -34.58223 -34.23724 -31.91704 -31.44709 -30.62872 -29.76027 -28.22310 -25.57274 -25.18669 -23.68172 -23.14063 -22.27681 -21.21801 -20.44736 -18.71964 -18.15052 -17.58786 -17.52033 -17.24087 -16.61940 -16.55352 -16.16224 -15.47382 -15.17849 -15.14683 -14.90307 -14.60978 -14.38396 -13.93040 -13.81549 -13.54267 -13.40626 -13.24994 -12.94133 -12.86413 -12.63610 -12.37221 -12.17555 -12.03149 -11.93380 -11.83025 -11.42704 -11.23346 -11.16563 -11.00036 -10.76714 -10.61340 -10.35757 -10.04495 -9.56386 -9.27991 -9.18629 -9.05320 -9.03481 -8.40450 -7.21751 -6.21570 -3.24522 0.60592 0.61568 2.75958 2.95951 3.18406 3.46061 3.47903 3.48783 3.66720 4.06769 4.15528 4.35164 4.51344 4.58820 4.71153 4.73144 4.88152 4.92877 5.03093 5.13440 5.13757 5.37975 5.38887 5.40217 5.50223 5.53003 5.55292 5.58984 5.64570 5.74145 5.78150 5.81901 5.91001 5.96429 5.98467 6.01455 6.10314 6.31104 6.37886 6.40656 6.42606 6.60594 6.74377 7.67778 7.75605 8.31450 8.63702 9.07274 9.93983 10.07252 11.26022 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003116 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.200571 B = 8983.771572 C =11041.016856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.072 0.928 4 C -0.139 4.139 5 C 0.178 3.822 6 H 0.069 0.931 7 N -0.724 5.724 8 C -0.342 4.342 9 H 0.067 0.933 10 C -0.039 4.039 11 N -0.938 5.938 12 Si 1.079 2.921 13 H -0.294 1.294 14 H -0.284 1.284 15 H -0.294 1.294 16 C 0.073 3.927 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.551 6.551 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.086 4.086 23 C -0.098 4.098 24 C -0.098 4.098 25 C -0.132 4.132 26 C 0.069 3.931 27 F -0.129 7.129 28 C 0.070 3.930 29 F -0.124 7.124 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.370 0.630 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 8.070 -19.724 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.090 0.910 4 C -0.179 4.179 5 C 0.065 3.935 6 H 0.087 0.913 7 N -0.365 5.365 8 C -0.473 4.473 9 H 0.085 0.915 10 C -0.237 4.237 11 N -0.583 5.583 12 Si 0.910 3.090 13 H -0.221 1.221 14 H -0.210 1.210 15 H -0.222 1.222 16 C -0.053 4.053 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.430 6.430 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.049 3.951 27 F -0.107 7.107 28 C 0.050 3.950 29 F -0.102 7.102 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.180 7.354 -19.315 21.086 hybrid contribution -1.333 0.331 -0.430 1.439 sum -5.513 7.685 -19.745 21.894 Atomic orbital electron populations 1.22115 0.94241 1.02599 1.02747 1.21845 0.94796 0.95297 0.84737 0.90978 1.23195 0.97858 1.00331 0.96467 1.21098 0.93141 0.90777 0.88435 0.91260 1.42390 1.05163 1.22699 1.66267 1.20052 0.83167 1.08186 1.35887 0.91497 1.25809 1.06911 0.93369 0.97638 1.70896 1.01833 1.38017 1.47522 0.83255 0.73671 0.76117 0.75984 1.22120 1.20960 1.22151 1.23295 0.85213 0.96530 1.00239 1.48660 1.28628 1.48173 1.08856 1.20146 0.83933 0.81691 0.82354 1.90621 1.25599 1.44687 1.82102 1.21608 1.00781 1.01852 0.93017 1.20305 0.99370 1.00209 0.90261 1.19949 0.98556 0.91571 0.98648 1.21092 0.95535 1.00926 0.94040 1.21092 0.99423 0.92938 0.98187 1.21103 0.98126 0.96156 0.99691 1.17722 1.00478 0.79056 0.97893 1.91542 1.92065 1.31908 1.95227 1.17595 0.94405 0.91714 0.91273 1.91546 1.66465 1.83795 1.68411 0.92364 0.90045 0.92853 0.90753 0.90154 0.79608 0.93273 0.92146 0.91075 0.88618 0.88767 0.89508 0.89113 0.84097 0.84142 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.60 37.16 0.32 -1.91 16 2 C 0.14 1.99 3.76 -66.42 -0.25 1.74 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.18 6.13 -24.59 -0.15 -2.33 16 5 C 0.18 3.27 3.61 -66.10 -0.24 3.03 16 6 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 7 N -0.72 -16.95 5.15 -51.66 -0.27 -17.22 16 8 C -0.34 -9.07 9.96 -15.06 -0.15 -9.22 16 9 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 10 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 11 N -0.94 -28.08 13.70 55.49 0.76 -27.32 16 12 Si 1.08 24.89 29.92 -169.99 -5.09 19.81 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.07 1.22 6.24 -3.07 -0.02 1.20 16 17 N -0.61 -9.34 3.24 -163.05 -0.53 -9.87 16 18 C 0.53 7.94 7.63 -10.99 -0.08 7.86 16 19 O -0.55 -9.30 13.71 5.55 0.08 -9.22 16 20 C -0.13 -1.61 4.87 -27.89 -0.14 -1.75 16 21 C -0.06 -0.69 4.41 -27.88 -0.12 -0.81 16 22 C -0.09 -0.86 5.14 -104.57 -0.54 -1.40 16 23 C -0.10 -0.74 9.68 -39.58 -0.38 -1.12 16 24 C -0.10 -0.64 10.04 -39.58 -0.40 -1.04 16 25 C -0.13 -1.04 10.02 -39.53 -0.40 -1.44 16 26 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 27 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 28 C 0.07 0.83 7.25 -39.37 -0.29 0.54 16 29 F -0.12 -1.70 16.48 2.25 0.04 -1.67 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.24 6.10 -51.93 -0.32 0.92 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.37 9.05 6.59 -40.82 -0.27 8.78 16 36 H 0.26 7.53 6.77 -40.82 -0.28 7.26 16 37 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 41 H 0.09 1.06 7.75 -51.93 -0.40 0.66 16 42 H 0.09 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -31.63 379.11 -8.83 -40.46 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.36 Total: 8.21 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.21 Total: -7.36 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.03 Total: -54.40 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.63 -8.83 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.919 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds