Wall clock time and date at job start Tue Mar 31 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32176 * 2 1 4 4 C 1.54908 * 110.37000 * 122.23910 * 2 1 3 5 5 C 1.55148 * 101.58440 * 155.95709 * 4 2 1 6 6 H 1.09004 * 110.72168 * 83.03600 * 5 4 2 7 7 N 1.46497 * 110.72351 * 206.13556 * 5 4 2 8 8 C 1.36935 * 120.00298 * 205.00001 * 7 5 4 9 9 H 1.08003 * 119.99995 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00267 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00268 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46845 * 60.00531 * 12 10 8 14 14 H 1.48503 * 109.47399 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47295 * 300.00628 * 12 10 8 16 16 C 1.54325 * 102.94206 * 324.49843 * 5 4 2 17 17 N 1.47019 * 107.27137 * 22.19274 * 16 5 4 18 18 C 1.34780 * 125.64859 * 181.02474 * 17 16 5 19 19 O 1.21288 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.50693 * 120.00245 * 0.03579 * 18 17 16 21 21 C 1.53001 * 109.47473 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.46995 * 180.02562 * 21 20 18 23 23 C 1.38257 * 119.99800 * 264.72131 * 22 21 20 24 24 C 1.38216 * 120.07130 * 179.77165 * 23 22 21 25 25 C 1.38255 * 120.06559 * 0.51045 * 24 23 22 26 26 C 1.38368 * 120.00181 * 359.74499 * 25 24 23 27 27 F 1.35105 * 120.03595 * 180.02562 * 26 25 24 28 28 C 1.38369 * 120.00068 * 85.00609 * 22 21 20 29 29 F 1.35093 * 120.03415 * 359.94829 * 28 22 21 30 30 H 1.09003 * 109.47026 * 297.75644 * 1 2 3 31 31 H 1.08998 * 109.47301 * 57.76128 * 1 2 3 32 32 H 1.09001 * 109.47229 * 177.76185 * 1 2 3 33 33 H 1.09001 * 111.00203 * 37.88374 * 4 2 1 34 34 H 1.08997 * 111.00381 * 274.03695 * 4 2 1 35 35 H 0.96992 * 120.00013 * 24.99901 * 7 5 4 36 36 H 0.97000 * 119.99327 * 359.97438 * 11 10 8 37 37 H 1.09009 * 109.88162 * 141.60563 * 16 5 4 38 38 H 1.08997 * 109.88679 * 262.77244 * 16 5 4 39 39 H 1.09000 * 109.47655 * 300.00643 * 20 18 17 40 40 H 1.09007 * 109.46622 * 60.00185 * 20 18 17 41 41 H 1.08994 * 109.47249 * 300.00241 * 21 20 18 42 42 H 1.09001 * 109.46707 * 60.00187 * 21 20 18 43 43 H 1.08003 * 119.96365 * 0.02818 * 23 22 21 44 44 H 1.08002 * 119.96732 * 180.27956 * 24 23 22 45 45 H 1.08004 * 119.99584 * 179.76828 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7747 1.2283 5 6 3.4789 -1.1965 0.7364 6 1 4.1949 -0.3869 0.8776 7 7 3.9273 -2.4087 1.4260 8 6 5.2657 -2.6701 1.5508 9 1 5.9907 -1.9828 1.1405 10 6 5.6906 -3.8185 2.2047 11 7 4.8071 -4.6564 2.7043 12 14 7.5163 -4.1753 2.3743 13 1 8.1685 -3.0727 3.1255 14 1 7.7050 -5.4533 3.1069 15 1 8.1270 -4.2840 1.0251 16 6 3.2523 -1.4744 -0.7646 17 7 2.0453 -0.7380 -1.1676 18 6 1.5006 -0.7372 -2.4004 19 8 0.4990 -0.0894 -2.6204 20 6 2.1357 -1.5411 -3.5054 21 6 1.3261 -1.3684 -4.7921 22 6 1.9610 -2.1729 -5.8969 23 6 2.8464 -1.5693 -6.7705 24 6 3.4332 -2.3069 -7.7814 25 6 3.1279 -3.6474 -7.9276 26 6 2.2380 -4.2531 -7.0582 27 9 1.9395 -5.5631 -7.2002 28 6 1.6532 -3.5143 -6.0406 29 9 0.7845 -4.1036 -5.1903 30 1 -0.3633 0.4786 0.9094 31 1 -0.3634 0.5482 -0.8692 32 1 -0.3634 -1.0269 -0.0401 33 1 1.4523 -1.6477 1.4412 34 1 2.1380 -0.1248 2.1007 35 1 3.2762 -3.0262 1.7942 36 1 3.8591 -4.4712 2.6159 37 1 4.1094 -1.1244 -1.3400 38 1 3.1061 -2.5424 -0.9260 39 1 3.1557 -1.1930 -3.6680 40 1 2.1516 -2.5945 -3.2252 41 1 0.3063 -1.7169 -4.6292 42 1 1.3097 -0.3151 -5.0723 43 1 3.0830 -0.5213 -6.6603 44 1 4.1281 -1.8348 -8.4601 45 1 3.5842 -4.2218 -8.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989858228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:36 Heat of formation + Delta-G solvation = -110.680932 kcal Electronic energy + Delta-G solvation = -29019.814157 eV Core-core repulsion = 24672.443281 eV Total energy + Delta-G solvation = -4347.370876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.55833 -49.65172 -41.38579 -40.08368 -38.87004 -36.32233 -35.17386 -33.31824 -32.96712 -31.30613 -30.64117 -29.87269 -26.78409 -26.24473 -25.57243 -23.84143 -23.31855 -22.31374 -21.82225 -19.98293 -19.39537 -18.96267 -18.37691 -18.21138 -17.70868 -17.50359 -17.33137 -16.82911 -16.36315 -16.10158 -15.95920 -15.76171 -15.50873 -15.47873 -15.05037 -14.82096 -14.45590 -14.36922 -14.17897 -13.80116 -13.66691 -13.48316 -13.28593 -13.17874 -12.95822 -12.78756 -12.69571 -12.65851 -12.39388 -12.18888 -12.15499 -12.05900 -11.86356 -11.77364 -11.22606 -11.02173 -10.67772 -9.91461 -9.78329 -9.68893 -9.18704 -8.37887 -5.34919 -0.09809 -0.05474 1.55137 1.61519 1.70588 1.86409 1.92007 2.37900 2.72529 2.76088 3.19799 3.34323 3.37994 3.53383 3.70052 3.72645 3.78462 3.83589 3.90123 4.04332 4.09354 4.12418 4.19978 4.23422 4.37423 4.39894 4.50029 4.58742 4.65799 4.72721 4.78601 4.79142 4.91734 4.97766 5.02336 5.03585 5.07717 5.18528 5.19560 5.23160 5.29704 5.46356 5.62120 5.75867 6.49169 6.49641 7.05517 7.10356 7.95643 8.07615 9.13338 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003116 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.200571 B = 8983.771572 C =11041.016856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.170 3.830 6 H 0.074 0.926 7 N -0.738 5.738 8 C -0.333 4.333 9 H 0.075 0.925 10 C -0.101 4.101 11 N -0.976 5.976 12 Si 1.125 2.875 13 H -0.276 1.276 14 H -0.298 1.298 15 H -0.276 1.276 16 C 0.089 3.911 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.569 6.569 20 C -0.127 4.127 21 C -0.055 4.055 22 C -0.095 4.095 23 C -0.089 4.089 24 C -0.083 4.083 25 C -0.125 4.125 26 C 0.042 3.958 27 F -0.145 7.145 28 C 0.037 3.963 29 F -0.148 7.148 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.361 0.639 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 10.539 -21.671 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.108 0.892 4 C -0.168 4.168 5 C 0.060 3.940 6 H 0.092 0.908 7 N -0.378 5.378 8 C -0.464 4.464 9 H 0.093 0.907 10 C -0.292 4.292 11 N -0.624 5.624 12 Si 0.950 3.050 13 H -0.201 1.201 14 H -0.225 1.225 15 H -0.202 1.202 16 C -0.037 4.037 17 N -0.345 5.345 18 C 0.317 3.683 19 O -0.449 6.449 20 C -0.166 4.166 21 C -0.093 4.093 22 C -0.096 4.096 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.143 4.143 26 C 0.022 3.978 27 F -0.124 7.124 28 C 0.017 3.983 29 F -0.127 7.127 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.193 0.807 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.188 0.812 44 H 0.199 0.801 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.309 9.882 -21.301 23.595 hybrid contribution -1.963 -0.328 0.096 1.992 sum -4.272 9.554 -21.206 23.647 Atomic orbital electron populations 1.22027 0.93752 1.01641 1.03430 1.21944 0.95145 0.95773 0.83788 0.89236 1.23102 0.95778 1.00268 0.97623 1.21309 0.94678 0.88961 0.89094 0.90784 1.42554 1.04137 1.24095 1.67057 1.20415 0.84654 1.07528 1.33782 0.90708 1.27138 1.10028 0.93885 0.98169 1.71003 1.01541 1.39564 1.50310 0.82664 0.69836 0.75737 0.76772 1.20148 1.22469 1.20227 1.22899 0.86290 0.95508 0.99043 1.48699 1.28319 1.48127 1.09375 1.20606 0.83615 0.81459 0.82601 1.90615 1.26339 1.45609 1.82386 1.21611 1.01920 1.00480 0.92627 1.20191 0.98022 1.01014 0.90082 1.19952 0.99649 0.90714 0.99259 1.21495 0.93903 1.02304 0.93021 1.21582 0.98709 0.92053 0.97757 1.21499 0.96635 0.97057 0.99119 1.18115 1.02047 0.78658 0.99004 1.91490 1.92438 1.33090 1.95405 1.18025 0.95398 0.92865 0.92049 1.91472 1.67501 1.84342 1.69342 0.90075 0.91081 0.94432 0.91978 0.88561 0.80702 0.94549 0.90649 0.93234 0.86459 0.90077 0.91797 0.87723 0.81162 0.80083 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.60 71.98 0.62 -3.44 16 2 C 0.14 3.75 3.76 45.47 0.17 3.93 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.13 -3.89 6.13 31.98 0.20 -3.69 16 5 C 0.17 6.09 3.61 46.18 0.17 6.26 16 6 H 0.07 2.61 8.09 -2.39 -0.02 2.59 16 7 N -0.74 -34.67 5.15 -317.34 -1.63 -36.30 16 8 C -0.33 -17.48 9.96 84.03 0.84 -16.64 16 9 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 10 C -0.10 -5.61 5.50 84.86 0.47 -5.15 16 11 N -0.98 -59.73 13.70 21.65 0.30 -59.43 16 12 Si 1.12 49.82 29.92 68.60 2.05 51.88 16 13 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 16 C 0.09 2.87 6.24 86.73 0.54 3.41 16 17 N -0.61 -18.12 3.24 -788.15 -2.56 -20.67 16 18 C 0.53 15.41 7.63 87.65 0.67 16.08 16 19 O -0.57 -18.86 13.71 -3.05 -0.04 -18.91 16 20 C -0.13 -2.99 4.87 29.85 0.15 -2.85 16 21 C -0.06 -1.17 4.41 29.85 0.13 -1.04 16 22 C -0.09 -1.80 5.14 -19.83 -0.10 -1.90 16 23 C -0.09 -1.04 9.68 22.27 0.22 -0.83 16 24 C -0.08 -0.74 10.04 22.27 0.22 -0.52 16 25 C -0.12 -1.66 10.02 22.30 0.22 -1.43 16 26 C 0.04 0.90 7.31 22.41 0.16 1.07 16 27 F -0.15 -3.71 17.18 44.97 0.77 -2.94 16 28 C 0.04 0.89 7.25 22.41 0.16 1.05 16 29 F -0.15 -4.43 16.48 44.97 0.74 -3.69 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.09 6.10 -2.39 -0.01 2.08 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.36 18.14 6.59 -92.71 -0.61 17.53 16 36 H 0.24 14.89 6.77 -92.71 -0.63 14.27 16 37 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.06 1.63 7.75 -2.39 -0.02 1.61 16 42 H 0.10 1.88 8.01 -2.39 -0.02 1.86 16 43 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 45 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -70.81 379.11 5.01 -65.81 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.54 Total: 29.95 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.83 Total: -5.70 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.89 Total: -116.40 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.51 Total: -6.63 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.88 kcal Total: -70.81 5.01 -65.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.871 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds