Wall clock time and date at job start Tue Mar 31 2020 21:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.99614 * 2 1 4 4 C 1.54325 * 109.88027 * 238.90658 * 2 1 3 5 5 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.36938 * 120.00108 * 155.00490 * 7 5 4 9 9 H 1.07994 * 120.00244 * 359.97438 * 8 7 5 10 10 C 1.38819 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99577 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00167 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47279 * 90.00382 * 12 10 8 14 14 H 1.48504 * 109.47282 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47380 * 330.00357 * 12 10 8 16 16 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 17 17 N 1.47015 * 109.88603 * 121.09807 * 2 1 3 18 18 C 1.34778 * 125.64845 * 298.40418 * 17 2 1 19 19 O 1.21282 * 119.99788 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00112 * 179.97438 * 18 17 2 21 21 C 1.53007 * 109.46937 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.46670 * 180.02562 * 21 20 18 23 23 C 1.38259 * 120.00063 * 100.00595 * 22 21 20 24 24 C 1.38210 * 120.06835 * 179.97438 * 23 22 21 25 25 C 1.38261 * 120.07550 * 0.04489 * 24 23 22 26 26 C 1.38371 * 119.99651 * 359.97279 * 25 24 23 27 27 F 1.35092 * 120.03321 * 180.02562 * 26 25 24 28 28 C 1.38374 * 119.99835 * 279.72018 * 22 21 20 29 29 F 1.35093 * 120.03793 * 0.03041 * 28 22 21 30 30 H 1.08997 * 109.46797 * 181.09671 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.09104 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.09277 * 1 2 3 33 33 H 1.08996 * 110.72124 * 100.02881 * 4 2 1 34 34 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 0.96996 * 119.99567 * 179.97438 * 11 10 8 37 37 H 1.08999 * 110.35942 * 81.82689 * 16 5 4 38 38 H 1.08996 * 110.36556 * 204.15522 * 16 5 4 39 39 H 1.08999 * 109.47065 * 299.99680 * 20 18 17 40 40 H 1.09003 * 109.46764 * 60.00206 * 20 18 17 41 41 H 1.09000 * 109.47160 * 300.00380 * 21 20 18 42 42 H 1.08998 * 109.46698 * 60.00326 * 21 20 18 43 43 H 1.07994 * 119.96300 * 359.96751 * 23 22 21 44 44 H 1.08001 * 119.96146 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00289 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6926 6 1 4.1653 -0.8688 -0.6605 7 7 3.5532 -2.7195 -1.4818 8 6 4.8164 -3.2464 -1.5230 9 1 5.6170 -2.7733 -0.9739 10 6 5.0681 -4.3882 -2.2713 11 7 6.2824 -4.8944 -2.3112 12 14 3.6835 -5.2062 -3.2215 13 1 3.6114 -4.6279 -4.5874 14 1 3.9419 -6.6656 -3.3150 15 1 2.3964 -4.9754 -2.5178 16 6 2.8146 -1.8794 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4656 19 8 1.1426 0.6203 2.7180 20 6 2.3833 -1.1903 3.5853 21 6 1.9851 -0.5776 4.9296 22 6 2.5616 -1.4053 6.0492 23 6 3.7161 -0.9941 6.6893 24 6 4.2458 -1.7519 7.7166 25 6 3.6229 -2.9232 8.1059 26 6 2.4675 -3.3376 7.4672 27 9 1.8580 -4.4817 7.8473 28 6 1.9323 -2.5738 6.4407 29 9 0.8013 -2.9736 5.8193 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 2.3529 -0.0460 -2.0201 34 1 1.3051 -1.4459 -1.6183 35 1 2.8341 -3.1443 -1.9751 36 1 6.4582 -5.6924 -2.8338 37 1 2.1886 -2.7715 0.7127 38 1 3.6717 -2.0338 1.3921 39 1 1.9972 -2.2075 3.5207 40 1 3.4700 -1.2080 3.5021 41 1 2.3715 0.4396 4.9940 42 1 0.8985 -0.5595 5.0130 43 1 4.2046 -0.0799 6.3860 44 1 5.1475 -1.4288 8.2156 45 1 4.0375 -3.5141 8.9091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989858229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:39 Heat of formation + Delta-G solvation = -91.995162 kcal Electronic energy + Delta-G solvation = -28975.334911 eV Core-core repulsion = 24628.774311 eV Total energy + Delta-G solvation = -4346.560600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.68764 -48.76599 -40.15994 -39.33849 -37.61052 -34.47326 -34.20487 -31.91885 -31.57453 -30.62332 -29.79609 -28.94262 -25.62057 -25.32827 -23.62150 -23.13947 -22.20450 -21.08813 -20.46384 -18.68248 -18.16969 -17.80840 -17.57929 -17.29946 -16.69708 -16.55669 -16.16536 -15.41333 -15.18157 -15.15464 -14.87750 -14.61349 -14.29869 -13.89184 -13.73884 -13.65945 -13.27757 -13.18513 -13.02277 -12.70645 -12.64085 -12.44033 -12.34897 -12.21628 -11.99860 -11.85884 -11.48632 -11.39955 -11.21949 -11.19330 -10.87657 -10.71589 -10.42615 -10.13123 -9.74680 -9.69908 -9.19550 -9.09736 -9.04753 -8.44812 -7.45180 -5.89524 -3.27853 0.61080 0.62231 2.74928 2.96047 3.16494 3.29568 3.32387 3.38752 3.47676 4.06246 4.15767 4.36004 4.47861 4.51401 4.68594 4.73980 4.84591 4.92658 4.99069 5.07806 5.11141 5.32816 5.37900 5.39051 5.46440 5.50455 5.53470 5.55289 5.64115 5.65401 5.69598 5.82618 5.87630 5.91285 5.96862 5.99846 6.03543 6.20816 6.31462 6.34950 6.42691 6.56208 6.66676 7.71545 7.84342 8.28221 8.29742 9.05406 9.77652 9.95508 11.28028 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.002976 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.846297 B = 9404.962780 C =10973.693519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.074 0.926 4 C -0.142 4.142 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.735 5.735 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.134 4.134 21 C -0.064 4.064 22 C -0.086 4.086 23 C -0.097 4.097 24 C -0.097 4.097 25 C -0.132 4.132 26 C 0.068 3.932 27 F -0.129 7.129 28 C 0.069 3.931 29 F -0.125 7.125 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 8.792 18.338 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.181 4.181 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.048 3.952 27 F -0.108 7.108 28 C 0.049 3.951 29 F -0.103 7.103 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.457 9.188 18.527 21.983 hybrid contribution -1.170 -1.319 -0.732 1.909 sum -8.627 7.869 17.795 21.283 Atomic orbital electron populations 1.22127 0.95154 1.02127 1.02461 1.21493 0.94229 0.96179 0.84617 0.90835 1.23086 0.98998 0.99795 0.96175 1.21253 0.95100 0.88769 0.88267 0.90506 1.42668 1.09124 1.29216 1.56654 1.19071 0.85686 1.07613 1.26105 0.88970 1.24680 0.96114 0.97928 0.99853 1.69696 1.19000 1.24020 1.44756 0.86580 0.82275 0.79274 0.80539 1.20903 1.21596 1.20247 1.23446 0.94665 0.87566 0.99720 1.48633 1.52093 1.28953 1.04670 1.20159 0.80294 0.85100 0.82530 1.90656 1.40747 1.28183 1.83516 1.21621 1.02994 1.00490 0.92248 1.20308 1.02097 0.98324 0.89397 1.19948 0.96062 0.93984 0.98716 1.21110 0.94407 1.00573 0.95413 1.21103 0.99992 0.93642 0.96826 1.21107 0.94275 0.98405 1.01278 1.17718 0.95012 0.84984 0.97472 1.91534 1.82354 1.46685 1.90222 1.17584 0.86445 0.95819 0.95230 1.91536 1.47526 1.90221 1.81033 0.92676 0.91497 0.91926 0.90014 0.90676 0.80214 0.92851 0.91398 0.90745 0.88767 0.88358 0.89093 0.89534 0.84023 0.84108 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.09 37.16 0.34 -1.73 16 2 C 0.14 1.91 3.46 -66.96 -0.23 1.68 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.01 6.12 -24.90 -0.15 -2.16 16 5 C 0.18 3.07 3.71 -65.78 -0.24 2.83 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -15.89 5.05 -51.35 -0.26 -16.15 16 8 C -0.26 -6.70 10.44 -15.06 -0.16 -6.85 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 11 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 12 Si 0.88 21.03 27.73 -169.99 -4.71 16.32 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 16 C 0.07 1.12 6.39 -2.52 -0.02 1.11 16 17 N -0.61 -8.88 3.06 -163.02 -0.50 -9.38 16 18 C 0.53 7.68 7.64 -10.98 -0.08 7.59 16 19 O -0.55 -9.23 15.03 5.56 0.08 -9.14 16 20 C -0.13 -1.56 4.69 -27.88 -0.13 -1.69 16 21 C -0.06 -0.67 4.36 -27.88 -0.12 -0.79 16 22 C -0.09 -0.83 5.14 -104.57 -0.54 -1.37 16 23 C -0.10 -0.72 9.67 -39.58 -0.38 -1.10 16 24 C -0.10 -0.63 10.04 -39.58 -0.40 -1.03 16 25 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 26 C 0.07 0.72 7.31 -39.36 -0.29 0.43 16 27 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 28 C 0.07 0.78 7.25 -39.36 -0.29 0.50 16 29 F -0.12 -1.63 16.57 2.25 0.04 -1.59 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 35 H 0.36 7.79 5.63 -40.82 -0.23 7.56 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.03 7.85 -51.93 -0.41 0.63 16 41 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 42 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 43 H 0.14 0.76 8.04 -52.49 -0.42 0.34 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -31.45 379.05 -8.43 -39.88 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.42 Total: 6.79 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.18 Total: -3.81 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.02 Total: -52.66 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.45 -8.43 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.114 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds