Wall clock time and date at job start Tue Mar 31 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.99614 * 2 1 4 4 C 1.54325 * 109.88027 * 238.90658 * 2 1 3 5 5 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.36938 * 120.00108 * 155.00490 * 7 5 4 9 9 H 1.07994 * 120.00244 * 359.97438 * 8 7 5 10 10 C 1.38819 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99577 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00167 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47279 * 90.00382 * 12 10 8 14 14 H 1.48504 * 109.47282 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47380 * 330.00357 * 12 10 8 16 16 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 17 17 N 1.47015 * 109.88603 * 121.09807 * 2 1 3 18 18 C 1.34778 * 125.64845 * 298.40418 * 17 2 1 19 19 O 1.21282 * 119.99788 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00112 * 179.97438 * 18 17 2 21 21 C 1.53007 * 109.46937 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.46670 * 180.02562 * 21 20 18 23 23 C 1.38259 * 120.00063 * 100.00595 * 22 21 20 24 24 C 1.38210 * 120.06835 * 179.97438 * 23 22 21 25 25 C 1.38261 * 120.07550 * 0.04489 * 24 23 22 26 26 C 1.38371 * 119.99651 * 359.97279 * 25 24 23 27 27 F 1.35092 * 120.03321 * 180.02562 * 26 25 24 28 28 C 1.38374 * 119.99835 * 279.72018 * 22 21 20 29 29 F 1.35093 * 120.03793 * 0.03041 * 28 22 21 30 30 H 1.08997 * 109.46797 * 181.09671 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.09104 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.09277 * 1 2 3 33 33 H 1.08996 * 110.72124 * 100.02881 * 4 2 1 34 34 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 0.96996 * 119.99567 * 179.97438 * 11 10 8 37 37 H 1.08999 * 110.35942 * 81.82689 * 16 5 4 38 38 H 1.08996 * 110.36556 * 204.15522 * 16 5 4 39 39 H 1.08999 * 109.47065 * 299.99680 * 20 18 17 40 40 H 1.09003 * 109.46764 * 60.00206 * 20 18 17 41 41 H 1.09000 * 109.47160 * 300.00380 * 21 20 18 42 42 H 1.08998 * 109.46698 * 60.00326 * 21 20 18 43 43 H 1.07994 * 119.96300 * 359.96751 * 23 22 21 44 44 H 1.08001 * 119.96146 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00289 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6926 6 1 4.1653 -0.8688 -0.6605 7 7 3.5532 -2.7195 -1.4818 8 6 4.8164 -3.2464 -1.5230 9 1 5.6170 -2.7733 -0.9739 10 6 5.0681 -4.3882 -2.2713 11 7 6.2824 -4.8944 -2.3112 12 14 3.6835 -5.2062 -3.2215 13 1 3.6114 -4.6279 -4.5874 14 1 3.9419 -6.6656 -3.3150 15 1 2.3964 -4.9754 -2.5178 16 6 2.8146 -1.8794 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4656 19 8 1.1426 0.6203 2.7180 20 6 2.3833 -1.1903 3.5853 21 6 1.9851 -0.5776 4.9296 22 6 2.5616 -1.4053 6.0492 23 6 3.7161 -0.9941 6.6893 24 6 4.2458 -1.7519 7.7166 25 6 3.6229 -2.9232 8.1059 26 6 2.4675 -3.3376 7.4672 27 9 1.8580 -4.4817 7.8473 28 6 1.9323 -2.5738 6.4407 29 9 0.8013 -2.9736 5.8193 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 2.3529 -0.0460 -2.0201 34 1 1.3051 -1.4459 -1.6183 35 1 2.8341 -3.1443 -1.9751 36 1 6.4582 -5.6924 -2.8338 37 1 2.1886 -2.7715 0.7127 38 1 3.6717 -2.0338 1.3921 39 1 1.9972 -2.2075 3.5207 40 1 3.4700 -1.2080 3.5021 41 1 2.3715 0.4396 4.9940 42 1 0.8985 -0.5595 5.0130 43 1 4.2046 -0.0799 6.3860 44 1 5.1475 -1.4288 8.2156 45 1 4.0375 -3.5141 8.9091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989858229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:38 Heat of formation + Delta-G solvation = -109.462731 kcal Electronic energy + Delta-G solvation = -28976.092361 eV Core-core repulsion = 24628.774311 eV Total energy + Delta-G solvation = -4347.318050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.53415 -49.62644 -41.32338 -40.06130 -38.86871 -36.11856 -35.12729 -33.53079 -32.93959 -31.28667 -30.68641 -30.43864 -26.78034 -26.29224 -25.37293 -23.82482 -23.16373 -22.20803 -21.82405 -19.90800 -19.65210 -18.95191 -18.34722 -18.26393 -17.66864 -17.50338 -17.31741 -16.53869 -16.49030 -16.04442 -15.88705 -15.73864 -15.45376 -15.17628 -14.94229 -14.69198 -14.63020 -14.33505 -14.14242 -13.90801 -13.70357 -13.61699 -13.47394 -13.17137 -12.97484 -12.94644 -12.86191 -12.71084 -12.38394 -12.14531 -12.13096 -12.08938 -11.89855 -11.82399 -11.51550 -11.06025 -10.84753 -9.89782 -9.76248 -9.70341 -9.33898 -8.01321 -5.36627 -0.07817 -0.03552 1.41344 1.43477 1.50455 1.58835 1.94881 2.39728 2.49775 2.77425 3.20183 3.28737 3.34690 3.51988 3.72139 3.74361 3.83474 3.88884 3.92325 4.06034 4.10777 4.15237 4.21922 4.29392 4.40558 4.45384 4.51523 4.61797 4.71279 4.78720 4.80829 4.83340 4.93407 4.99655 5.05246 5.07023 5.10482 5.20493 5.21853 5.32088 5.34614 5.42688 5.77429 5.78516 6.22205 6.52196 7.06908 7.12542 7.81367 8.00052 9.19455 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.002976 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.846297 B = 9404.962780 C =10973.693519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.738 5.738 8 C -0.233 4.233 9 H 0.064 0.936 10 C -0.057 4.057 11 N -0.980 5.980 12 Si 0.949 3.051 13 H -0.278 1.278 14 H -0.301 1.301 15 H -0.250 1.250 16 C 0.084 3.916 17 N -0.611 5.611 18 C 0.528 3.472 19 O -0.574 6.574 20 C -0.129 4.129 21 C -0.056 4.056 22 C -0.094 4.094 23 C -0.091 4.091 24 C -0.085 4.085 25 C -0.126 4.126 26 C 0.043 3.957 27 F -0.145 7.145 28 C 0.040 3.960 29 F -0.145 7.145 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.168 0.832 44 H 0.179 0.821 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 10.042 19.006 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.096 0.904 4 C -0.167 4.167 5 C 0.059 3.941 6 H 0.088 0.912 7 N -0.380 5.380 8 C -0.364 4.364 9 H 0.082 0.918 10 C -0.249 4.249 11 N -0.630 5.630 12 Si 0.776 3.224 13 H -0.204 1.204 14 H -0.228 1.228 15 H -0.175 1.175 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.455 6.455 20 C -0.168 4.168 21 C -0.093 4.093 22 C -0.095 4.095 23 C -0.109 4.109 24 C -0.103 4.103 25 C -0.144 4.144 26 C 0.023 3.977 27 F -0.123 7.123 28 C 0.020 3.980 29 F -0.124 7.124 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.186 0.814 44 H 0.197 0.803 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.841 10.487 19.221 23.257 hybrid contribution -0.998 -1.575 -0.835 2.043 sum -8.839 8.912 18.386 22.262 Atomic orbital electron populations 1.22055 0.94246 1.01936 1.02854 1.21595 0.94919 0.96215 0.84035 0.90420 1.23007 0.97315 0.99740 0.96638 1.21412 0.96416 0.87429 0.88869 0.91239 1.42601 1.07457 1.30399 1.57527 1.19037 0.86803 1.06648 1.23870 0.91828 1.25436 0.98451 0.99189 1.01844 1.69869 1.21536 1.24898 1.46737 0.85509 0.80282 0.77258 0.79303 1.20445 1.22772 1.17486 1.23125 0.94740 0.87713 0.98623 1.48665 1.51954 1.28603 1.05167 1.20596 0.79792 0.84932 0.82843 1.90646 1.41739 1.29303 1.83770 1.21626 1.03613 0.99652 0.91924 1.20198 1.01103 0.98918 0.89117 1.19946 0.97049 0.93512 0.99007 1.21490 0.93214 1.01320 0.94876 1.21562 1.00488 0.92369 0.95839 1.21485 0.92900 0.98912 1.01104 1.18084 0.96332 0.84971 0.98338 1.91487 1.82874 1.47546 1.90428 1.17949 0.86608 0.97101 0.96313 1.91472 1.48737 1.90586 1.81577 0.93029 0.93044 0.89668 0.88419 0.90038 0.79744 0.93363 0.91910 0.90597 0.89322 0.86898 0.88075 0.91367 0.81422 0.80341 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.09 71.98 0.65 -2.98 16 2 C 0.14 3.46 3.46 45.34 0.16 3.62 16 3 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.13 -3.32 6.12 31.78 0.19 -3.13 16 5 C 0.17 5.58 3.71 46.39 0.17 5.76 16 6 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 7 N -0.74 -30.85 5.05 -316.37 -1.60 -32.45 16 8 C -0.23 -12.23 10.44 84.04 0.88 -11.35 16 9 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 11 N -0.98 -60.28 13.97 21.65 0.30 -59.98 16 12 Si 0.95 43.11 27.73 68.60 1.90 45.01 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 15 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 16 C 0.08 2.52 6.39 86.86 0.55 3.08 16 17 N -0.61 -16.99 3.06 -788.05 -2.42 -19.41 16 18 C 0.53 14.84 7.64 87.66 0.67 15.51 16 19 O -0.57 -18.80 15.03 -3.04 -0.05 -18.84 16 20 C -0.13 -2.91 4.69 29.85 0.14 -2.77 16 21 C -0.06 -1.13 4.36 29.85 0.13 -1.00 16 22 C -0.09 -1.74 5.14 -19.83 -0.10 -1.84 16 23 C -0.09 -1.10 9.67 22.27 0.22 -0.88 16 24 C -0.08 -0.80 10.04 22.27 0.22 -0.58 16 25 C -0.13 -1.66 10.02 22.31 0.22 -1.44 16 26 C 0.04 0.89 7.31 22.41 0.16 1.06 16 27 F -0.14 -3.53 17.18 44.97 0.77 -2.76 16 28 C 0.04 0.92 7.25 22.41 0.16 1.09 16 29 F -0.14 -4.01 16.57 44.97 0.75 -3.27 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.40 6.90 -2.39 -0.02 1.38 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.05 7.71 -2.39 -0.02 2.03 16 35 H 0.37 14.86 5.63 -92.71 -0.52 14.33 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.25 7.48 -2.39 -0.02 2.24 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.11 2.21 7.85 -2.39 -0.02 2.19 16 41 H 0.10 1.82 7.96 -2.39 -0.02 1.80 16 42 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16 43 H 0.17 1.13 8.04 -2.91 -0.02 1.11 16 44 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 45 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -69.96 379.05 5.00 -64.96 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.43 Total: 25.32 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.90 Total: 1.41 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.71 Total: -111.84 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 1.52 Total: -6.03 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.01 kcal Total: -69.96 5.00 -64.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989858229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.500 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds