Wall clock time and date at job start Tue Mar 31 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58510 * 2 1 4 4 C 1.53194 * 109.69900 * 239.64313 * 2 1 3 5 5 C 1.53041 * 109.31060 * 185.50427 * 4 2 1 6 6 H 1.08999 * 109.46161 * 301.36309 * 5 4 2 7 7 N 1.46497 * 109.46018 * 181.38394 * 5 4 2 8 8 C 1.36939 * 119.99695 * 155.00413 * 7 5 4 9 9 H 1.07996 * 120.00433 * 359.97438 * 8 7 5 10 10 C 1.38818 * 120.00037 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99631 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00257 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47166 * 89.99759 * 12 10 8 14 14 H 1.48495 * 109.47361 * 210.00038 * 12 10 8 15 15 H 1.48503 * 109.46999 * 329.99806 * 12 10 8 16 16 C 1.53050 * 109.53560 * 61.36586 * 5 4 2 17 17 C 1.53186 * 109.31151 * 298.63565 * 16 5 4 18 18 N 1.46925 * 109.58546 * 120.28281 * 2 1 3 19 19 C 1.34769 * 120.63474 * 353.51438 * 18 2 1 20 20 O 1.21283 * 119.99735 * 354.25048 * 19 18 2 21 21 C 1.50701 * 120.00437 * 174.24862 * 19 18 2 22 22 C 1.50691 * 109.47351 * 180.02562 * 21 19 18 23 23 C 1.38234 * 119.98786 * 264.72334 * 22 21 19 24 24 C 1.38189 * 120.04915 * 179.76834 * 23 22 21 25 25 C 1.38496 * 120.02614 * 0.51005 * 24 23 22 26 26 F 1.35098 * 120.01123 * 179.76520 * 25 24 23 27 27 C 1.38401 * 119.97288 * 359.74463 * 25 24 23 28 28 C 1.38443 * 119.95137 * 0.02562 * 27 25 24 29 29 F 1.35097 * 120.01304 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.46799 * 305.47003 * 1 2 3 31 31 H 1.08993 * 109.47404 * 65.46926 * 1 2 3 32 32 H 1.09001 * 109.47296 * 185.47426 * 1 2 3 33 33 H 1.08995 * 109.49908 * 305.45899 * 4 2 1 34 34 H 1.08997 * 109.49944 * 65.52693 * 4 2 1 35 35 H 0.96997 * 119.99973 * 335.00265 * 7 5 4 36 36 H 0.96992 * 119.99940 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49537 * 178.68358 * 16 5 4 38 38 H 1.08994 * 109.49387 * 58.58681 * 16 5 4 39 39 H 1.09009 * 109.58877 * 294.84420 * 17 16 5 40 40 H 1.09001 * 109.58501 * 174.42529 * 17 16 5 41 41 H 1.09004 * 109.46694 * 300.00329 * 21 19 18 42 42 H 1.08997 * 109.46993 * 59.99467 * 21 19 18 43 43 H 1.08000 * 119.97012 * 0.02562 * 23 22 21 44 44 H 1.07999 * 119.98726 * 180.25432 * 24 23 22 45 45 H 1.07999 * 120.02522 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5705 -0.8443 -1.1675 6 1 4.0070 0.1519 -1.0963 7 7 4.0709 -1.5117 -2.3718 8 6 5.3555 -1.2922 -2.7925 9 1 5.9996 -0.6270 -2.2367 10 6 5.8296 -1.9241 -3.9340 11 7 5.0445 -2.7345 -4.6117 12 14 7.5816 -1.6243 -4.5082 13 1 8.4855 -2.6220 -3.8815 14 1 7.6476 -1.7559 -5.9859 15 1 8.0046 -0.2565 -4.1138 16 6 3.9602 -1.6608 0.0670 17 6 3.4654 -0.9425 1.3263 18 7 2.0225 -0.6980 1.1954 19 6 1.1672 -1.1059 2.1536 20 8 -0.0064 -0.8075 2.0860 21 6 1.6689 -1.9330 3.3092 22 6 0.5217 -2.2555 4.2316 23 6 0.2815 -1.4633 5.3386 24 6 -0.7731 -1.7551 6.1826 25 6 -1.5841 -2.8481 5.9261 26 9 -2.6121 -3.1359 6.7540 27 6 -1.3413 -3.6450 4.8209 28 6 -0.2874 -3.3489 3.9734 29 9 -0.0495 -4.1257 2.8939 30 1 -0.3633 0.5964 0.8370 31 1 -0.3634 0.4266 -0.9348 32 1 -0.3634 -1.0230 0.0980 33 1 1.6079 -1.7257 -1.2905 34 1 1.7683 -0.1676 -2.1365 35 1 3.4923 -2.1089 -2.8712 36 1 5.3758 -3.1764 -5.4090 37 1 5.0446 -1.7624 0.1085 38 1 3.5036 -2.6488 0.0086 39 1 3.9887 0.0077 1.4345 40 1 3.6525 -1.5665 2.2002 41 1 2.1028 -2.8590 2.9319 42 1 2.4278 -1.3722 3.8549 43 1 0.9159 -0.6132 5.5417 44 1 -0.9624 -1.1331 7.0450 45 1 -1.9734 -4.4973 4.6198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044612181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:18 Heat of formation + Delta-G solvation = -96.078152 kcal Electronic energy + Delta-G solvation = -29447.232422 eV Core-core repulsion = 25100.494770 eV Total energy + Delta-G solvation = -4346.737652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07461 -50.02103 -41.60902 -39.87946 -38.59403 -36.14256 -34.61668 -33.71238 -32.98625 -31.78062 -30.99117 -28.70174 -27.96606 -26.00312 -24.40314 -24.23430 -23.71446 -22.43827 -21.51623 -20.06207 -19.23277 -19.07695 -18.30526 -17.88179 -17.31209 -16.93748 -16.78333 -16.70606 -16.63169 -16.32908 -15.99271 -15.53252 -15.45347 -15.37194 -14.95613 -14.81180 -14.72198 -14.44857 -14.23618 -13.77747 -13.41157 -13.38650 -13.10778 -12.93677 -12.87922 -12.82775 -12.74188 -12.61865 -12.52622 -12.32744 -12.15905 -12.01466 -11.90857 -11.68817 -11.34790 -10.87630 -10.20539 -10.02104 -9.61770 -9.52980 -8.99760 -7.92162 -5.20972 -0.09954 0.02483 1.48950 1.50265 1.58529 1.65106 1.98944 2.41210 2.57762 2.86277 3.37731 3.41312 3.51710 3.58291 3.61636 3.75396 3.89331 3.96113 4.07860 4.12229 4.14684 4.28195 4.36766 4.43024 4.52092 4.59861 4.64843 4.73149 4.78408 4.81774 4.85101 4.87987 4.94458 5.04173 5.05467 5.09780 5.17056 5.21462 5.28987 5.42624 5.52354 5.57537 5.72698 5.76354 6.29368 6.50954 7.23624 7.35124 8.11362 8.33969 9.31677 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002337 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.364762 B =11977.369596 C =12170.078629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.153 3.847 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.740 5.740 8 C -0.232 4.232 9 H 0.081 0.919 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.971 3.029 13 H -0.288 1.288 14 H -0.301 1.301 15 H -0.266 1.266 16 C -0.143 4.143 17 C 0.114 3.886 18 N -0.605 5.605 19 C 0.514 3.486 20 O -0.562 6.562 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.044 4.044 24 C -0.154 4.154 25 C 0.114 3.886 26 F -0.138 7.138 27 C -0.202 4.202 28 C 0.118 3.882 29 F -0.144 7.144 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.170 0.830 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 4.562 25.581 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 H 0.105 0.895 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.068 0.932 7 N -0.378 5.378 8 C -0.364 4.364 9 H 0.099 0.901 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.215 1.215 14 H -0.228 1.228 15 H -0.191 1.191 16 C -0.184 4.184 17 C -0.009 4.009 18 N -0.338 5.338 19 C 0.303 3.697 20 O -0.442 6.442 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.062 4.062 24 C -0.173 4.173 25 C 0.095 3.905 26 F -0.117 7.117 27 C -0.221 4.221 28 C 0.098 3.902 29 F -0.122 7.122 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.168 0.832 43 H 0.194 0.806 44 H 0.187 0.813 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.255 4.774 25.513 27.556 hybrid contribution 0.335 -1.066 -1.491 1.863 sum -8.920 3.707 24.022 25.891 Atomic orbital electron populations 1.22027 0.93090 1.01923 1.01013 1.21183 0.95064 0.95571 0.83203 0.89550 1.22152 0.96095 1.00218 0.97848 1.20426 0.91943 0.94872 0.86260 0.93156 1.42690 1.12156 1.54447 1.28555 1.19643 0.90035 1.20808 1.05897 0.90083 1.25575 1.02062 1.00616 0.99006 1.69832 1.37231 1.35338 1.20089 0.85161 0.80117 0.78123 0.76511 1.21488 1.22804 1.19108 1.22466 1.01168 0.99177 0.95591 1.21962 0.78527 1.01872 0.98521 1.48270 1.08254 1.57474 1.19811 1.20853 0.85662 0.79564 0.83615 1.90744 1.18328 1.57671 1.77454 1.20770 0.97395 1.02147 0.93817 1.19652 0.98254 0.95254 0.98294 1.21133 0.96200 0.97966 0.90907 1.21505 0.95674 0.97106 1.03001 1.17477 0.87296 0.96381 0.89369 1.91514 1.56642 1.93236 1.70288 1.21104 1.00483 1.04064 0.96473 1.17430 0.96394 0.91432 0.84900 1.91502 1.93812 1.73826 1.53101 0.90838 0.93137 0.94189 0.93650 0.91510 0.80032 0.94256 0.91357 0.93883 0.89106 0.86819 0.87199 0.83231 0.80619 0.81255 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.62 71.98 0.55 -2.90 16 2 C 0.15 4.09 3.49 44.98 0.16 4.25 16 3 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.12 -4.06 4.85 30.67 0.15 -3.92 16 5 C 0.17 6.31 2.73 45.02 0.12 6.44 16 6 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 7 N -0.74 -36.17 5.12 -322.80 -1.65 -37.83 16 8 C -0.23 -12.38 9.93 84.03 0.83 -11.55 16 9 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 11 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 12 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 C -0.14 -4.32 5.66 30.67 0.17 -4.14 16 17 C 0.11 2.25 6.35 86.36 0.55 2.80 16 18 N -0.60 -14.20 2.97 -795.02 -2.36 -16.57 16 19 C 0.51 12.09 7.50 87.66 0.66 12.75 16 20 O -0.56 -16.77 11.60 -3.04 -0.04 -16.80 16 21 C -0.10 -1.61 3.96 29.10 0.12 -1.50 16 22 C -0.11 -2.01 4.38 -19.82 -0.09 -2.09 16 23 C -0.04 -0.55 9.68 22.26 0.22 -0.34 16 24 C -0.15 -1.99 10.03 22.32 0.22 -1.77 16 25 C 0.11 2.00 7.30 22.37 0.16 2.17 16 26 F -0.14 -2.56 17.27 44.97 0.78 -1.78 16 27 C -0.20 -4.00 10.01 22.36 0.22 -3.78 16 28 C 0.12 2.60 7.24 22.37 0.16 2.76 16 29 F -0.14 -3.80 16.56 44.97 0.74 -3.05 16 30 H 0.07 2.10 6.54 -2.39 -0.02 2.08 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.29 6.95 -2.39 -0.02 1.27 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.37 19.99 7.80 -92.71 -0.72 19.26 16 36 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.11 1.49 5.93 -2.39 -0.01 1.47 16 41 H 0.11 1.75 7.57 -2.38 -0.02 1.74 16 42 H 0.15 1.11 7.62 -2.39 -0.02 1.09 16 43 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -70.79 371.45 4.75 -66.04 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.30 Total: 26.95 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.67 Total: -4.92 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.73 Total: -113.69 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.04 Total: -16.80 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.52 Total: -4.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.79 4.75 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.035 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds