Wall clock time and date at job start Tue Mar 31 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.58749 * 2 1 4 4 C 1.53197 * 109.58307 * 120.43168 * 2 1 3 5 5 C 1.53040 * 109.31054 * 174.42108 * 4 2 1 6 6 H 1.08997 * 109.45288 * 58.64462 * 5 4 2 7 7 N 1.46496 * 109.46184 * 178.61081 * 5 4 2 8 8 C 1.36939 * 120.00474 * 205.06729 * 7 5 4 9 9 H 1.08002 * 119.99436 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31611 * 119.99805 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99853 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47506 * 89.99939 * 12 10 8 14 14 H 1.48502 * 109.47163 * 209.99762 * 12 10 8 15 15 H 1.48501 * 109.47221 * 329.99686 * 12 10 8 16 16 C 1.53038 * 109.53755 * 298.62962 * 5 4 2 17 17 C 1.53199 * 109.31372 * 61.36719 * 16 5 4 18 18 N 1.46923 * 108.77081 * 305.36735 * 17 16 5 19 19 C 1.34784 * 120.62957 * 233.58214 * 18 17 16 20 20 O 1.21277 * 120.00238 * 174.95081 * 19 18 17 21 21 C 1.50704 * 119.99680 * 354.95293 * 19 18 17 22 22 C 1.50700 * 109.46948 * 179.97438 * 21 19 18 23 23 C 1.38227 * 119.98652 * 264.72661 * 22 21 19 24 24 C 1.38193 * 120.04865 * 179.72624 * 23 22 21 25 25 C 1.38494 * 120.02396 * 0.54701 * 24 23 22 26 26 F 1.35103 * 120.01311 * 179.74912 * 25 24 23 27 27 C 1.38397 * 119.97299 * 359.72762 * 25 24 23 28 28 C 1.38442 * 119.95262 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01206 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.47523 * 175.92105 * 1 2 3 31 31 H 1.09000 * 109.46908 * 295.92504 * 1 2 3 32 32 H 1.09001 * 109.47236 * 55.91765 * 1 2 3 33 33 H 1.08995 * 109.50201 * 54.46484 * 4 2 1 34 34 H 1.09003 * 109.49204 * 294.36411 * 4 2 1 35 35 H 0.97003 * 119.99756 * 25.06744 * 7 5 4 36 36 H 0.97009 * 120.00201 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.49913 * 181.31779 * 16 5 4 38 38 H 1.09003 * 109.49996 * 301.38243 * 16 5 4 39 39 H 1.08993 * 109.58371 * 65.15136 * 17 16 5 40 40 H 1.08994 * 109.58879 * 185.58079 * 17 16 5 41 41 H 1.08998 * 109.47142 * 299.99707 * 21 19 18 42 42 H 1.09001 * 109.47247 * 59.99853 * 21 19 18 43 43 H 1.08001 * 119.97800 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.98814 * 180.29590 * 24 23 22 45 45 H 1.08006 * 120.02139 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 1.2445 5 6 3.5674 -0.8496 1.1691 6 1 4.0059 0.1458 1.0994 7 7 4.0651 -1.5189 2.3734 8 6 5.3492 -1.3014 2.7966 9 1 5.9949 -0.6361 2.2426 10 6 5.8206 -1.9352 3.9381 11 7 7.0549 -1.7265 4.3445 12 14 4.7035 -3.0853 4.8966 13 1 4.8472 -4.4669 4.3712 14 1 5.0817 -3.0601 6.3324 15 1 3.2935 -2.6435 4.7482 16 6 3.9568 -1.6658 -0.0655 17 6 3.4650 -0.9454 -1.3249 18 7 2.0226 -0.6981 -1.1953 19 6 1.1673 -1.1035 -2.1550 20 8 -0.0281 -0.9760 -1.9952 21 6 1.6967 -1.7152 -3.4265 22 6 0.5440 -2.0801 -4.3261 23 6 0.0383 -3.3665 -4.3137 24 6 -1.0223 -3.7010 -5.1339 25 6 -1.5724 -2.7505 -5.9778 26 9 -2.6060 -3.0792 -6.7833 27 6 -1.0632 -1.4638 -5.9951 28 6 -0.0046 -1.1281 -5.1685 29 9 0.4937 0.1275 -5.1848 30 1 -0.3634 -1.0250 -0.0731 31 1 -0.3633 0.4493 0.9243 32 1 -0.3634 0.5759 -0.8511 33 1 1.6029 -1.7270 1.2892 34 1 1.7660 -0.1695 2.1366 35 1 3.4851 -2.1162 2.8712 36 1 7.3843 -2.1692 5.1424 37 1 5.0411 -1.7697 -0.1059 38 1 3.4986 -2.6532 -0.0083 39 1 3.9903 0.0036 -1.4317 40 1 3.6517 -1.5691 -2.1991 41 1 2.3411 -0.9975 -3.9341 42 1 2.2687 -2.6117 -3.1877 43 1 0.4698 -4.1096 -3.6595 44 1 -1.4197 -4.7051 -5.1199 45 1 -1.4913 -0.7220 -6.6532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044612182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:21 Heat of formation + Delta-G solvation = -73.623025 kcal Electronic energy + Delta-G solvation = -29431.919853 eV Core-core repulsion = 25086.155929 eV Total energy + Delta-G solvation = -4345.763924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33258 -49.28355 -40.65356 -39.15822 -37.46931 -34.69396 -33.72771 -32.12536 -31.99151 -31.13979 -29.88524 -27.78892 -26.96740 -24.38250 -23.58686 -22.88493 -22.70952 -21.42698 -20.24159 -19.09398 -18.51745 -17.65824 -17.56621 -16.92936 -16.46375 -16.18161 -16.06811 -15.58306 -15.48180 -15.31174 -14.87388 -14.74511 -14.29250 -14.23345 -13.92019 -13.58813 -13.52568 -13.39375 -12.99892 -12.63312 -12.42226 -12.28656 -12.24337 -12.18137 -11.95566 -11.88215 -11.72086 -11.46316 -11.06551 -10.98025 -10.88524 -10.56834 -10.32255 -9.95682 -9.64710 -9.44406 -9.16197 -8.98611 -8.85584 -8.50356 -7.34104 -5.82721 -3.18755 0.57503 0.66972 2.57688 2.81943 3.14803 3.33438 3.36839 3.41873 3.52781 4.04409 4.17048 4.20182 4.47065 4.49552 4.54094 4.71558 4.92021 4.95208 5.06195 5.12259 5.15412 5.23576 5.37226 5.42386 5.45374 5.48574 5.51767 5.58543 5.67010 5.71114 5.78040 5.84946 5.88874 5.99454 6.02192 6.22001 6.31058 6.33623 6.38400 6.41734 6.64073 6.76658 6.89839 7.44087 7.92630 8.17114 8.36299 9.14420 9.87295 10.06931 11.35394 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.002410 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.705642 B =11615.947754 C =11819.114312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.072 0.928 4 C -0.138 4.138 5 C 0.183 3.817 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.517 3.483 20 O -0.532 6.532 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.049 4.049 24 C -0.162 4.162 25 C 0.126 3.874 26 F -0.133 7.133 27 C -0.192 4.192 28 C 0.145 3.855 29 F -0.128 7.128 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 -1.050 -21.605 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.305 3.695 20 O -0.409 6.409 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.067 4.067 24 C -0.180 4.180 25 C 0.107 3.893 26 F -0.112 7.112 27 C -0.211 4.211 28 C 0.126 3.874 29 F -0.106 7.106 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.136 -0.845 -21.482 26.292 hybrid contribution -0.590 -0.727 0.667 1.150 sum -15.726 -1.572 -20.816 26.136 Atomic orbital electron populations 1.22193 0.92796 1.03639 1.00425 1.21299 0.95439 0.95111 0.83662 0.90967 1.22338 0.97474 1.00941 0.96974 1.20133 0.90781 0.95350 0.86371 0.92565 1.42795 1.13122 1.54943 1.28126 1.19057 0.87487 1.23392 1.07531 0.89171 1.24675 0.96100 1.00115 0.98182 1.69697 1.15094 1.47069 1.26168 0.86560 0.80537 0.81538 0.79933 1.21135 1.21746 1.20318 1.22640 1.02206 0.99731 0.94646 1.21897 0.79420 1.00851 0.99580 1.48208 1.07693 1.57554 1.20183 1.20290 0.86558 0.78383 0.84298 1.90769 1.15473 1.55421 1.79280 1.20716 0.96589 1.03602 0.93701 1.19434 0.99362 0.93718 0.98062 1.20772 0.94256 0.95134 0.96563 1.21166 0.98631 1.00242 0.98004 1.17287 0.87016 0.93089 0.91924 1.91530 1.55629 1.92933 1.71098 1.20971 0.99302 0.97080 1.03788 1.17061 0.93915 0.79651 0.96786 1.91528 1.86144 1.37596 1.95352 0.91150 0.93980 0.91394 0.91906 0.90597 0.80645 0.93024 0.90044 0.92256 0.91107 0.90298 0.87511 0.87131 0.83870 0.83940 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 7.59 37.16 0.28 -1.52 16 2 C 0.15 1.97 3.49 -67.60 -0.24 1.73 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.09 4.84 -26.61 -0.13 -2.22 16 5 C 0.18 3.21 2.73 -67.89 -0.19 3.02 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.73 4.92 -53.39 -0.26 -16.99 16 8 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 12 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 16 C -0.15 -2.24 5.66 -26.61 -0.15 -2.39 16 17 C 0.11 1.18 6.33 -3.71 -0.02 1.15 16 18 N -0.60 -7.42 2.97 -165.22 -0.49 -7.91 16 19 C 0.52 6.36 7.60 -10.98 -0.08 6.28 16 20 O -0.53 -7.96 11.44 5.56 0.06 -7.90 16 21 C -0.11 -0.95 4.00 -29.03 -0.12 -1.07 16 22 C -0.10 -1.00 4.38 -104.55 -0.46 -1.45 16 23 C -0.05 -0.40 9.67 -39.60 -0.38 -0.78 16 24 C -0.16 -1.28 10.03 -39.50 -0.40 -1.68 16 25 C 0.13 1.15 7.30 -39.43 -0.29 0.86 16 26 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 27 C -0.19 -1.78 10.01 -39.45 -0.39 -2.18 16 28 C 0.15 1.50 7.24 -39.43 -0.29 1.21 16 29 F -0.13 -1.43 16.57 2.25 0.04 -1.40 16 30 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.36 8.09 5.66 -40.82 -0.23 7.85 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.66 5.96 -51.93 -0.31 0.35 16 41 H 0.11 0.83 7.76 -51.93 -0.40 0.43 16 42 H 0.11 0.75 7.39 -51.93 -0.38 0.36 16 43 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -31.99 368.26 -8.37 -40.36 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.27 Total: 6.10 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.10 Total: -5.70 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.02 Total: -52.69 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.06 Total: -7.90 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.99 -8.37 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.267 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds