Wall clock time and date at job start Tue Mar 31 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.58749 * 2 1 4 4 C 1.53197 * 109.58307 * 120.43168 * 2 1 3 5 5 C 1.53040 * 109.31054 * 174.42108 * 4 2 1 6 6 H 1.08997 * 109.45288 * 58.64462 * 5 4 2 7 7 N 1.46496 * 109.46184 * 178.61081 * 5 4 2 8 8 C 1.36939 * 120.00474 * 205.06729 * 7 5 4 9 9 H 1.08002 * 119.99436 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31611 * 119.99805 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99853 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47506 * 89.99939 * 12 10 8 14 14 H 1.48502 * 109.47163 * 209.99762 * 12 10 8 15 15 H 1.48501 * 109.47221 * 329.99686 * 12 10 8 16 16 C 1.53038 * 109.53755 * 298.62962 * 5 4 2 17 17 C 1.53199 * 109.31372 * 61.36719 * 16 5 4 18 18 N 1.46923 * 108.77081 * 305.36735 * 17 16 5 19 19 C 1.34784 * 120.62957 * 233.58214 * 18 17 16 20 20 O 1.21277 * 120.00238 * 174.95081 * 19 18 17 21 21 C 1.50704 * 119.99680 * 354.95293 * 19 18 17 22 22 C 1.50700 * 109.46948 * 179.97438 * 21 19 18 23 23 C 1.38227 * 119.98652 * 264.72661 * 22 21 19 24 24 C 1.38193 * 120.04865 * 179.72624 * 23 22 21 25 25 C 1.38494 * 120.02396 * 0.54701 * 24 23 22 26 26 F 1.35103 * 120.01311 * 179.74912 * 25 24 23 27 27 C 1.38397 * 119.97299 * 359.72762 * 25 24 23 28 28 C 1.38442 * 119.95262 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01206 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.47523 * 175.92105 * 1 2 3 31 31 H 1.09000 * 109.46908 * 295.92504 * 1 2 3 32 32 H 1.09001 * 109.47236 * 55.91765 * 1 2 3 33 33 H 1.08995 * 109.50201 * 54.46484 * 4 2 1 34 34 H 1.09003 * 109.49204 * 294.36411 * 4 2 1 35 35 H 0.97003 * 119.99756 * 25.06744 * 7 5 4 36 36 H 0.97009 * 120.00201 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.49913 * 181.31779 * 16 5 4 38 38 H 1.09003 * 109.49996 * 301.38243 * 16 5 4 39 39 H 1.08993 * 109.58371 * 65.15136 * 17 16 5 40 40 H 1.08994 * 109.58879 * 185.58079 * 17 16 5 41 41 H 1.08998 * 109.47142 * 299.99707 * 21 19 18 42 42 H 1.09001 * 109.47247 * 59.99853 * 21 19 18 43 43 H 1.08001 * 119.97800 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.98814 * 180.29590 * 24 23 22 45 45 H 1.08006 * 120.02139 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7311 1.2445 5 6 3.5674 -0.8496 1.1691 6 1 4.0059 0.1458 1.0994 7 7 4.0651 -1.5189 2.3734 8 6 5.3492 -1.3014 2.7966 9 1 5.9949 -0.6361 2.2426 10 6 5.8206 -1.9352 3.9381 11 7 7.0549 -1.7265 4.3445 12 14 4.7035 -3.0853 4.8966 13 1 4.8472 -4.4669 4.3712 14 1 5.0817 -3.0601 6.3324 15 1 3.2935 -2.6435 4.7482 16 6 3.9568 -1.6658 -0.0655 17 6 3.4650 -0.9454 -1.3249 18 7 2.0226 -0.6981 -1.1953 19 6 1.1673 -1.1035 -2.1550 20 8 -0.0281 -0.9760 -1.9952 21 6 1.6967 -1.7152 -3.4265 22 6 0.5440 -2.0801 -4.3261 23 6 0.0383 -3.3665 -4.3137 24 6 -1.0223 -3.7010 -5.1339 25 6 -1.5724 -2.7505 -5.9778 26 9 -2.6060 -3.0792 -6.7833 27 6 -1.0632 -1.4638 -5.9951 28 6 -0.0046 -1.1281 -5.1685 29 9 0.4937 0.1275 -5.1848 30 1 -0.3634 -1.0250 -0.0731 31 1 -0.3633 0.4493 0.9243 32 1 -0.3634 0.5759 -0.8511 33 1 1.6029 -1.7270 1.2892 34 1 1.7660 -0.1695 2.1366 35 1 3.4851 -2.1162 2.8712 36 1 7.3843 -2.1692 5.1424 37 1 5.0411 -1.7697 -0.1059 38 1 3.4986 -2.6532 -0.0083 39 1 3.9903 0.0036 -1.4317 40 1 3.6517 -1.5691 -2.1991 41 1 2.3411 -0.9975 -3.9341 42 1 2.2687 -2.6117 -3.1877 43 1 0.4698 -4.1096 -3.6595 44 1 -1.4197 -4.7051 -5.1199 45 1 -1.4913 -0.7220 -6.6532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044612182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:21 Heat of formation + Delta-G solvation = -91.730391 kcal Electronic energy + Delta-G solvation = -29432.705047 eV Core-core repulsion = 25086.155929 eV Total energy + Delta-G solvation = -4346.549118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.05715 -50.02177 -41.62669 -39.89305 -38.64927 -36.24699 -34.63080 -33.83023 -32.98693 -31.79149 -31.48977 -28.76879 -27.95854 -25.89164 -24.24562 -24.23277 -23.70748 -22.41486 -21.62621 -20.20856 -19.47482 -19.21570 -18.29384 -17.85483 -17.28251 -16.94151 -16.86017 -16.69969 -16.41162 -16.32044 -16.21818 -15.86453 -15.46843 -15.18429 -14.96605 -14.77114 -14.65910 -14.45747 -14.31546 -13.87537 -13.73853 -13.37583 -13.18819 -13.02179 -12.96844 -12.88176 -12.67600 -12.64761 -12.56463 -12.30145 -12.07955 -12.01624 -11.92855 -11.77213 -11.34645 -10.91893 -10.18831 -10.01439 -9.60878 -9.54668 -9.28983 -8.00026 -5.32771 -0.10288 0.02103 1.39399 1.41159 1.48720 1.66409 1.96296 2.40399 2.49924 2.85554 3.31539 3.37225 3.48790 3.51233 3.57919 3.63001 3.89122 3.92691 4.03645 4.10990 4.11120 4.27802 4.35325 4.42405 4.52077 4.59221 4.61781 4.65233 4.77561 4.80496 4.84873 4.87297 4.94242 5.03000 5.05097 5.08072 5.15788 5.21853 5.27241 5.43135 5.51800 5.72348 5.75633 5.80542 6.24125 6.49603 7.10247 7.23282 7.87183 8.05121 9.21305 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.002410 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.705642 B =11615.947754 C =11819.114312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.150 3.850 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.175 3.825 6 H 0.045 0.955 7 N -0.753 5.753 8 C -0.222 4.222 9 H 0.061 0.939 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.951 3.049 13 H -0.280 1.280 14 H -0.300 1.300 15 H -0.255 1.255 16 C -0.142 4.142 17 C 0.113 3.887 18 N -0.605 5.605 19 C 0.514 3.486 20 O -0.561 6.561 21 C -0.102 4.102 22 C -0.112 4.112 23 C -0.049 4.049 24 C -0.157 4.157 25 C 0.114 3.886 26 F -0.138 7.138 27 C -0.199 4.199 28 C 0.124 3.876 29 F -0.138 7.138 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.363 0.637 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.168 0.832 44 H 0.165 0.835 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.121 -2.319 -22.823 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.047 3.953 3 H 0.097 0.903 4 C -0.165 4.165 5 C 0.067 3.933 6 H 0.063 0.937 7 N -0.395 5.395 8 C -0.353 4.353 9 H 0.079 0.921 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.779 3.221 13 H -0.206 1.206 14 H -0.227 1.227 15 H -0.179 1.179 16 C -0.183 4.183 17 C -0.010 4.010 18 N -0.338 5.338 19 C 0.303 3.697 20 O -0.440 6.440 21 C -0.142 4.142 22 C -0.114 4.114 23 C -0.067 4.067 24 C -0.176 4.176 25 C 0.095 3.905 26 F -0.117 7.117 27 C -0.218 4.218 28 C 0.105 3.895 29 F -0.117 7.117 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.556 -2.102 -22.760 28.223 hybrid contribution -0.193 -0.264 0.954 1.008 sum -16.749 -2.366 -21.807 27.598 Atomic orbital electron populations 1.22023 0.92724 1.02595 1.00402 1.21209 0.95319 0.95335 0.83459 0.90337 1.22188 0.95317 1.01060 0.97941 1.20399 0.92323 0.94817 0.85741 0.93651 1.42844 1.11492 1.55386 1.29816 1.19020 0.88749 1.21167 1.06372 0.92080 1.25445 0.97607 1.02723 0.99850 1.69872 1.17379 1.49206 1.27018 0.85466 0.79618 0.79409 0.77597 1.20583 1.22713 1.17936 1.22428 1.01196 0.99631 0.95019 1.21923 0.78605 1.01594 0.98839 1.48249 1.08160 1.57439 1.19930 1.20851 0.86134 0.77697 0.84987 1.90765 1.16815 1.56472 1.79995 1.20775 0.96718 1.04939 0.91720 1.19620 0.99688 0.94116 0.97966 1.21095 0.93974 0.95104 0.96541 1.21470 0.98142 1.00969 0.96979 1.17467 0.87223 0.93415 0.92438 1.91517 1.55894 1.92949 1.71337 1.21110 0.99228 0.97595 1.03883 1.17294 0.94728 0.79603 0.97876 1.91495 1.86358 1.38308 1.95533 0.92516 0.93144 0.92361 0.92081 0.90976 0.80443 0.93505 0.91733 0.92199 0.90236 0.86582 0.86082 0.84227 0.81452 0.81725 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 7.59 71.98 0.55 -2.52 16 2 C 0.15 3.72 3.49 44.98 0.16 3.87 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.13 -3.59 4.84 30.67 0.15 -3.44 16 5 C 0.17 5.91 2.73 45.02 0.12 6.04 16 6 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 7 N -0.75 -32.99 4.92 -322.82 -1.59 -34.57 16 8 C -0.22 -12.03 10.41 84.03 0.87 -11.16 16 9 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 10 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 11 N -0.98 -61.73 13.97 21.65 0.30 -61.43 16 12 Si 0.95 44.60 27.74 68.60 1.90 46.50 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 15 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 16 C -0.14 -3.92 5.66 30.67 0.17 -3.75 16 17 C 0.11 2.15 6.33 86.37 0.55 2.70 16 18 N -0.60 -13.25 2.97 -795.03 -2.36 -15.62 16 19 C 0.51 11.28 7.60 87.66 0.67 11.94 16 20 O -0.56 -15.82 11.44 -3.02 -0.03 -15.86 16 21 C -0.10 -1.47 4.00 29.10 0.12 -1.36 16 22 C -0.11 -1.87 4.38 -19.82 -0.09 -1.95 16 23 C -0.05 -0.65 9.67 22.26 0.22 -0.44 16 24 C -0.16 -2.10 10.03 22.32 0.22 -1.88 16 25 C 0.11 1.91 7.30 22.37 0.16 2.08 16 26 F -0.14 -2.47 17.27 44.97 0.78 -1.70 16 27 C -0.20 -3.52 10.01 22.36 0.22 -3.29 16 28 C 0.12 2.41 7.24 22.37 0.16 2.57 16 29 F -0.14 -2.98 16.57 44.97 0.74 -2.24 16 30 H 0.06 1.61 6.73 -2.39 -0.02 1.59 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.61 6.77 -2.39 -0.02 1.59 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.36 15.58 5.66 -92.71 -0.52 15.06 16 36 H 0.26 15.41 8.31 -92.70 -0.77 14.63 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.41 5.96 -2.39 -0.01 1.40 16 41 H 0.12 1.43 7.76 -2.39 -0.02 1.42 16 42 H 0.14 1.19 7.39 -2.39 -0.02 1.18 16 43 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 45 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.70 368.26 4.90 -65.81 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.43 Total: 22.95 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.72 Total: -3.84 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -3.65 Total: -111.62 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.03 Total: -15.86 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.52 Total: -3.94 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -70.70 4.90 -65.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds