Wall clock time and date at job start Tue Mar 31 2020 21:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59060 * 2 1 4 4 C 1.53169 * 109.70515 * 239.63146 * 2 1 3 5 5 C 1.53047 * 109.32538 * 185.50011 * 4 2 1 6 6 H 1.08991 * 109.45623 * 181.38607 * 5 4 2 7 7 N 1.46497 * 109.46115 * 301.36324 * 5 4 2 8 8 C 1.36938 * 119.99843 * 205.02647 * 7 5 4 9 9 H 1.08001 * 119.99828 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47005 * 90.00140 * 12 10 8 14 14 H 1.48500 * 109.47376 * 330.00061 * 12 10 8 15 15 H 1.48503 * 109.47249 * 210.00237 * 12 10 8 16 16 C 1.53042 * 109.52337 * 61.37789 * 5 4 2 17 17 C 1.53198 * 109.31167 * 298.63924 * 16 5 4 18 18 N 1.46923 * 108.77560 * 54.63664 * 17 16 5 19 19 C 1.34778 * 120.62592 * 126.41360 * 18 17 16 20 20 O 1.21291 * 119.99207 * 174.22574 * 19 18 17 21 21 C 1.50692 * 120.00498 * 354.22519 * 19 18 17 22 22 C 1.50698 * 109.47152 * 179.97438 * 21 19 18 23 23 C 1.38237 * 119.98728 * 100.00377 * 22 21 19 24 24 C 1.38179 * 120.05057 * 180.02562 * 23 22 21 25 25 C 1.38501 * 120.02762 * 359.97073 * 24 23 22 26 26 F 1.35099 * 120.01277 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.96892 * 0.02562 * 25 24 23 28 28 C 1.38441 * 119.95510 * 359.76610 * 27 25 24 29 29 F 1.35090 * 120.01323 * 180.23148 * 28 27 25 30 30 H 1.09002 * 109.46634 * 305.47262 * 1 2 3 31 31 H 1.08998 * 109.46598 * 65.47165 * 1 2 3 32 32 H 1.08998 * 109.47367 * 185.46945 * 1 2 3 33 33 H 1.09003 * 109.47391 * 65.55743 * 4 2 1 34 34 H 1.08996 * 109.50371 * 305.46825 * 4 2 1 35 35 H 0.97000 * 120.00289 * 25.02869 * 7 5 4 36 36 H 0.97004 * 119.99776 * 0.02562 * 11 10 8 37 37 H 1.09000 * 109.49658 * 58.58823 * 16 5 4 38 38 H 1.09001 * 109.49476 * 178.65660 * 16 5 4 39 39 H 1.09006 * 109.58562 * 174.42803 * 17 16 5 40 40 H 1.08995 * 109.58277 * 294.70464 * 17 16 5 41 41 H 1.09002 * 109.47025 * 300.00167 * 21 19 18 42 42 H 1.08997 * 109.47167 * 59.99777 * 21 19 18 43 43 H 1.07997 * 119.97093 * 359.97293 * 23 22 21 44 44 H 1.08001 * 119.98807 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.01868 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7290 -1.2441 5 6 3.5707 -0.8445 -1.1673 6 1 3.9427 -1.3411 -2.0633 7 7 4.1574 0.4945 -1.0720 8 6 5.4415 0.7110 -1.4954 9 1 6.0216 -0.1052 -1.8999 10 6 5.9973 1.9798 -1.4056 11 7 5.2898 2.9749 -0.9140 12 14 7.7493 2.2750 -1.9825 13 1 7.7406 2.6513 -3.4191 14 1 8.5460 1.0352 -1.8003 15 1 8.3541 3.3734 -1.1867 16 6 3.9602 -1.6609 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6981 1.1954 19 6 1.1672 -1.1060 2.1537 20 8 -0.0065 -0.8074 2.0860 21 6 1.6688 -1.9330 3.3093 22 6 0.5218 -2.2544 4.2322 23 6 -0.0905 -3.4922 4.1683 24 6 -1.1427 -3.7882 5.0136 25 6 -1.5848 -2.8450 5.9265 26 9 -2.6139 -3.1345 6.7525 27 6 -0.9725 -1.6056 5.9914 28 6 0.0844 -1.3117 5.1470 29 9 0.6860 -0.1039 5.2125 30 1 -0.3633 0.5964 0.8370 31 1 -0.3632 0.4266 -0.9349 32 1 -0.3634 -1.0230 0.0979 33 1 1.7687 -0.1673 -2.1360 34 1 1.6079 -1.7258 -1.2901 35 1 3.6362 1.2277 -0.7090 36 1 4.3802 2.8215 -0.6141 37 1 3.5036 -2.6489 0.0088 38 1 5.0446 -1.7631 0.1083 39 1 3.6524 -1.5666 2.2005 40 1 3.9904 0.0063 1.4360 41 1 2.1027 -2.8590 2.9320 42 1 2.4276 -1.3722 3.8550 43 1 0.2533 -4.2280 3.4565 44 1 -1.6206 -4.7553 4.9626 45 1 -1.3169 -0.8694 6.7027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044612183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:24 Heat of formation + Delta-G solvation = -75.222961 kcal Electronic energy + Delta-G solvation = -29936.643677 eV Core-core repulsion = 25590.810374 eV Total energy + Delta-G solvation = -4345.833303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.27401 -49.15819 -40.53843 -39.10068 -37.49062 -34.43823 -33.59998 -32.13931 -31.96959 -31.06483 -28.93554 -27.66287 -26.82855 -24.11667 -23.50599 -23.44718 -22.75357 -21.56177 -20.04715 -18.57989 -18.37038 -17.50757 -17.28795 -16.83307 -16.35787 -16.09738 -16.00419 -15.56137 -15.46260 -15.18582 -14.74541 -14.65469 -14.22253 -14.17326 -13.78598 -13.64612 -13.45712 -13.32159 -13.07852 -12.87551 -12.27865 -12.16480 -12.13103 -11.99456 -11.80243 -11.69835 -11.52064 -11.31015 -10.86482 -10.73297 -10.60488 -10.36981 -10.22840 -10.03014 -9.37604 -9.21406 -9.04526 -8.98905 -8.75279 -8.25976 -7.09484 -6.14301 -3.15346 0.64941 0.74213 2.72313 2.93793 3.28110 3.48373 3.52571 3.61006 3.66621 4.13336 4.24211 4.28940 4.53040 4.62697 4.63614 4.79856 5.08765 5.13100 5.19536 5.23980 5.28943 5.38874 5.49122 5.51527 5.54767 5.61464 5.62467 5.66753 5.73288 5.76741 5.89844 5.91971 6.00194 6.06282 6.18045 6.31603 6.38083 6.46782 6.50350 6.62262 6.64662 6.71291 6.95986 7.64121 7.76706 8.32718 8.70504 9.16875 10.03347 10.18393 11.33422 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.002622 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.878292 B =10677.685070 C =10966.753046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.113 3.887 18 N -0.598 5.598 19 C 0.516 3.484 20 O -0.536 6.536 21 C -0.105 4.105 22 C -0.104 4.104 23 C -0.051 4.051 24 C -0.163 4.163 25 C 0.126 3.874 26 F -0.134 7.134 27 C -0.192 4.192 28 C 0.149 3.851 29 F -0.126 7.126 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.367 0.633 36 H 0.254 0.746 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 -15.095 11.499 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.190 4.190 17 C -0.010 4.010 18 N -0.331 5.331 19 C 0.303 3.697 20 O -0.414 6.414 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.070 4.070 24 C -0.182 4.182 25 C 0.106 3.894 26 F -0.112 7.112 27 C -0.211 4.211 28 C 0.129 3.871 29 F -0.104 7.104 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.052 -13.892 11.210 20.487 hybrid contribution -1.214 -0.793 0.408 1.507 sum -11.266 -14.685 11.618 21.853 Atomic orbital electron populations 1.22182 0.93077 1.03053 1.00830 1.21216 0.94927 0.95757 0.83679 0.90814 1.22258 0.97409 1.00327 0.97308 1.20118 0.90236 0.87691 0.95062 0.93051 1.42522 1.14064 1.04739 1.76381 1.20050 0.90449 0.96990 1.38743 0.91745 1.25733 1.06074 0.91577 1.00798 1.70865 1.10897 1.32424 1.44611 0.83214 0.74472 0.75111 0.75985 1.22377 1.22194 1.21447 1.22498 1.01519 0.97898 0.97049 1.21741 0.79183 1.01763 0.98266 1.48160 1.07672 1.57071 1.20153 1.20254 0.86159 0.80203 0.83051 1.90746 1.17156 1.56921 1.76573 1.20698 0.96758 1.02188 0.94867 1.19464 0.99539 0.94252 0.97287 1.20743 0.93712 0.95403 0.97099 1.21134 0.99519 1.00296 0.97273 1.17276 0.87079 0.93756 0.91280 1.91524 1.55970 1.93656 1.70093 1.20983 0.98597 0.97956 1.03600 1.17083 0.92757 0.81100 0.96115 1.91548 1.81772 1.41727 1.95337 0.90595 0.93999 0.92122 0.90837 0.91967 0.79902 0.93424 0.93173 0.90711 0.91030 0.89961 0.87316 0.87573 0.83963 0.84015 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 7.62 37.16 0.28 -1.81 16 2 C 0.15 2.40 3.19 -67.61 -0.22 2.19 16 3 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 4 C -0.13 -2.15 5.08 -26.62 -0.14 -2.28 16 5 C 0.18 3.29 3.10 -67.89 -0.21 3.08 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.73 -16.92 4.31 -53.39 -0.23 -17.15 16 8 C -0.33 -8.75 9.93 -15.06 -0.15 -8.90 16 9 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 11 N -0.94 -28.30 13.70 55.49 0.76 -27.54 16 12 Si 1.08 25.20 29.92 -169.99 -5.09 20.11 16 13 H -0.30 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.31 5.78 -26.61 -0.15 -2.47 16 17 C 0.11 1.67 6.09 -3.71 -0.02 1.65 16 18 N -0.60 -9.03 2.97 -165.23 -0.49 -9.52 16 19 C 0.52 7.47 7.49 -10.99 -0.08 7.39 16 20 O -0.54 -9.05 11.52 5.55 0.06 -8.99 16 21 C -0.11 -1.13 3.91 -29.04 -0.11 -1.25 16 22 C -0.10 -1.13 4.43 -104.55 -0.46 -1.59 16 23 C -0.05 -0.45 9.66 -39.60 -0.38 -0.83 16 24 C -0.16 -1.39 10.02 -39.51 -0.40 -1.79 16 25 C 0.13 1.25 7.30 -39.43 -0.29 0.96 16 26 F -0.13 -1.36 17.27 2.25 0.04 -1.33 16 27 C -0.19 -2.02 10.01 -39.45 -0.39 -2.42 16 28 C 0.15 1.78 7.13 -39.43 -0.28 1.50 16 29 F -0.13 -1.71 16.66 2.25 0.04 -1.67 16 30 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.37 8.88 4.89 -40.82 -0.20 8.68 16 36 H 0.25 7.54 6.77 -40.82 -0.28 7.27 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.82 5.93 -51.93 -0.31 0.52 16 40 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 41 H 0.11 0.88 7.79 -51.93 -0.40 0.48 16 42 H 0.11 1.08 7.50 -51.93 -0.39 0.69 16 43 H 0.14 0.90 8.04 -52.49 -0.42 0.48 16 44 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -31.34 365.43 -8.53 -39.87 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.03 Total: 8.61 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.10 Total: -7.91 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.04 Total: -54.21 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.06 Total: -8.99 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.34 -8.53 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.349 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds