Wall clock time and date at job start Tue Mar 31 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.59060 * 2 1 4 4 C 1.53169 * 109.70515 * 239.63146 * 2 1 3 5 5 C 1.53047 * 109.32538 * 185.50011 * 4 2 1 6 6 H 1.08991 * 109.45623 * 181.38607 * 5 4 2 7 7 N 1.46497 * 109.46115 * 301.36324 * 5 4 2 8 8 C 1.36938 * 119.99843 * 205.02647 * 7 5 4 9 9 H 1.08001 * 119.99828 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00021 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47005 * 90.00140 * 12 10 8 14 14 H 1.48500 * 109.47376 * 330.00061 * 12 10 8 15 15 H 1.48503 * 109.47249 * 210.00237 * 12 10 8 16 16 C 1.53042 * 109.52337 * 61.37789 * 5 4 2 17 17 C 1.53198 * 109.31167 * 298.63924 * 16 5 4 18 18 N 1.46923 * 108.77560 * 54.63664 * 17 16 5 19 19 C 1.34778 * 120.62592 * 126.41360 * 18 17 16 20 20 O 1.21291 * 119.99207 * 174.22574 * 19 18 17 21 21 C 1.50692 * 120.00498 * 354.22519 * 19 18 17 22 22 C 1.50698 * 109.47152 * 179.97438 * 21 19 18 23 23 C 1.38237 * 119.98728 * 100.00377 * 22 21 19 24 24 C 1.38179 * 120.05057 * 180.02562 * 23 22 21 25 25 C 1.38501 * 120.02762 * 359.97073 * 24 23 22 26 26 F 1.35099 * 120.01277 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.96892 * 0.02562 * 25 24 23 28 28 C 1.38441 * 119.95510 * 359.76610 * 27 25 24 29 29 F 1.35090 * 120.01323 * 180.23148 * 28 27 25 30 30 H 1.09002 * 109.46634 * 305.47262 * 1 2 3 31 31 H 1.08998 * 109.46598 * 65.47165 * 1 2 3 32 32 H 1.08998 * 109.47367 * 185.46945 * 1 2 3 33 33 H 1.09003 * 109.47391 * 65.55743 * 4 2 1 34 34 H 1.08996 * 109.50371 * 305.46825 * 4 2 1 35 35 H 0.97000 * 120.00289 * 25.02869 * 7 5 4 36 36 H 0.97004 * 119.99776 * 0.02562 * 11 10 8 37 37 H 1.09000 * 109.49658 * 58.58823 * 16 5 4 38 38 H 1.09001 * 109.49476 * 178.65660 * 16 5 4 39 39 H 1.09006 * 109.58562 * 174.42803 * 17 16 5 40 40 H 1.08995 * 109.58277 * 294.70464 * 17 16 5 41 41 H 1.09002 * 109.47025 * 300.00167 * 21 19 18 42 42 H 1.08997 * 109.47167 * 59.99777 * 21 19 18 43 43 H 1.07997 * 119.97093 * 359.97293 * 23 22 21 44 44 H 1.08001 * 119.98807 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.01868 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7290 -1.2441 5 6 3.5707 -0.8445 -1.1673 6 1 3.9427 -1.3411 -2.0633 7 7 4.1574 0.4945 -1.0720 8 6 5.4415 0.7110 -1.4954 9 1 6.0216 -0.1052 -1.8999 10 6 5.9973 1.9798 -1.4056 11 7 5.2898 2.9749 -0.9140 12 14 7.7493 2.2750 -1.9825 13 1 7.7406 2.6513 -3.4191 14 1 8.5460 1.0352 -1.8003 15 1 8.3541 3.3734 -1.1867 16 6 3.9602 -1.6609 0.0671 17 6 3.4653 -0.9425 1.3265 18 7 2.0225 -0.6981 1.1954 19 6 1.1672 -1.1060 2.1537 20 8 -0.0065 -0.8074 2.0860 21 6 1.6688 -1.9330 3.3093 22 6 0.5218 -2.2544 4.2322 23 6 -0.0905 -3.4922 4.1683 24 6 -1.1427 -3.7882 5.0136 25 6 -1.5848 -2.8450 5.9265 26 9 -2.6139 -3.1345 6.7525 27 6 -0.9725 -1.6056 5.9914 28 6 0.0844 -1.3117 5.1470 29 9 0.6860 -0.1039 5.2125 30 1 -0.3633 0.5964 0.8370 31 1 -0.3632 0.4266 -0.9349 32 1 -0.3634 -1.0230 0.0979 33 1 1.7687 -0.1673 -2.1360 34 1 1.6079 -1.7258 -1.2901 35 1 3.6362 1.2277 -0.7090 36 1 4.3802 2.8215 -0.6141 37 1 3.5036 -2.6489 0.0088 38 1 5.0446 -1.7631 0.1083 39 1 3.6524 -1.5666 2.2005 40 1 3.9904 0.0063 1.4360 41 1 2.1027 -2.8590 2.9320 42 1 2.4276 -1.3722 3.8550 43 1 0.2533 -4.2280 3.4565 44 1 -1.6206 -4.7553 4.9626 45 1 -1.3169 -0.8694 6.7027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044612183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:23 Heat of formation + Delta-G solvation = -92.215379 kcal Electronic energy + Delta-G solvation = -29937.380523 eV Core-core repulsion = 25590.810374 eV Total energy + Delta-G solvation = -4346.570149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.09206 -50.03567 -41.70927 -39.95170 -38.78833 -36.11377 -34.67029 -33.78942 -33.02840 -31.79943 -30.62138 -28.75243 -27.99773 -25.58066 -25.29935 -24.24660 -23.74723 -22.65913 -21.31972 -19.89202 -19.26767 -19.13381 -18.30886 -17.94376 -17.36391 -17.07825 -16.95659 -16.78819 -16.40569 -16.31385 -16.10747 -15.73625 -15.49839 -15.41373 -15.05504 -14.92743 -14.70849 -14.44179 -14.41817 -13.89984 -13.42241 -13.39361 -13.21540 -12.98255 -12.90831 -12.76629 -12.65859 -12.62428 -12.34711 -12.21459 -12.02991 -11.91262 -11.82023 -11.64127 -11.15371 -10.89031 -10.24043 -10.03383 -9.63348 -9.55488 -9.05359 -8.32685 -5.26487 -0.12066 0.00722 1.60236 1.61238 1.70077 1.83641 1.93004 2.38423 2.74425 2.84536 3.35622 3.45310 3.48598 3.54585 3.57780 3.74318 3.87410 3.92831 3.93674 4.01837 4.09385 4.22002 4.29941 4.39807 4.44112 4.47703 4.59487 4.69134 4.76191 4.79526 4.85015 4.85112 4.91877 5.01379 5.03224 5.06606 5.18444 5.20166 5.20753 5.28742 5.35780 5.67369 5.68687 5.74233 6.48321 6.53821 7.14576 7.18255 8.05588 8.17891 9.18662 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.002622 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.878292 B =10677.685070 C =10966.753046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.147 3.853 3 H 0.039 0.961 4 C -0.121 4.121 5 C 0.169 3.831 6 H 0.045 0.955 7 N -0.744 5.744 8 C -0.317 4.317 9 H 0.069 0.931 10 C -0.108 4.108 11 N -0.980 5.980 12 Si 1.126 2.874 13 H -0.290 1.290 14 H -0.270 1.270 15 H -0.299 1.299 16 C -0.138 4.138 17 C 0.118 3.882 18 N -0.599 5.599 19 C 0.512 3.488 20 O -0.562 6.562 21 C -0.100 4.100 22 C -0.114 4.114 23 C -0.045 4.045 24 C -0.154 4.154 25 C 0.115 3.885 26 F -0.137 7.137 27 C -0.201 4.201 28 C 0.120 3.880 29 F -0.144 7.144 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.357 0.643 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.041 0.959 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.176 0.824 44 H 0.171 0.829 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -18.710 11.512 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 H 0.057 0.943 4 C -0.160 4.160 5 C 0.061 3.939 6 H 0.063 0.937 7 N -0.387 5.387 8 C -0.449 4.449 9 H 0.087 0.913 10 C -0.299 4.299 11 N -0.629 5.629 12 Si 0.952 3.048 13 H -0.217 1.217 14 H -0.195 1.195 15 H -0.226 1.226 16 C -0.179 4.179 17 C -0.004 4.004 18 N -0.332 5.332 19 C 0.302 3.698 20 O -0.442 6.442 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.063 4.063 24 C -0.172 4.172 25 C 0.096 3.904 26 F -0.116 7.116 27 C -0.220 4.220 28 C 0.100 3.900 29 F -0.123 7.123 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.190 0.810 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.165 0.835 42 H 0.129 0.871 43 H 0.194 0.806 44 H 0.188 0.812 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.986 -17.577 11.228 23.124 hybrid contribution -1.355 0.251 0.421 1.441 sum -11.341 -17.326 11.650 23.759 Atomic orbital electron populations 1.22003 0.92314 1.02838 1.00419 1.21063 0.95329 0.94387 0.84840 0.94266 1.22121 0.95699 1.01512 0.96638 1.20408 0.91531 0.85691 0.96277 0.93665 1.42709 1.13203 1.06566 1.76242 1.20375 0.91553 0.96685 1.36257 0.91309 1.27026 1.09215 0.91962 1.01679 1.70978 1.10743 1.33565 1.47640 0.82621 0.71006 0.75622 0.75512 1.21737 1.19490 1.22582 1.22345 1.01110 0.98993 0.95422 1.21682 0.78550 1.00434 0.99722 1.48175 1.07896 1.57084 1.20050 1.20915 0.85700 0.79892 0.83315 1.90740 1.18421 1.57858 1.77167 1.20744 0.96877 1.03099 0.93186 1.19633 0.99951 0.94895 0.97061 1.21134 0.92963 0.95029 0.97159 1.21500 0.98932 1.00920 0.95874 1.17463 0.87158 0.93957 0.91820 1.91516 1.56131 1.93631 1.70317 1.21097 0.98541 0.98691 1.03718 1.17420 0.93823 0.81040 0.97669 1.91495 1.82226 1.42958 1.95610 0.92568 0.93174 0.91738 0.91741 0.89263 0.80969 0.94852 0.89508 0.91781 0.86883 0.94020 0.83508 0.87136 0.80635 0.81151 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 7.62 71.98 0.55 -3.11 16 2 C 0.15 4.81 3.19 44.97 0.14 4.95 16 3 H 0.04 1.55 6.64 -2.39 -0.02 1.53 16 4 C -0.12 -3.72 5.08 30.67 0.16 -3.56 16 5 C 0.17 6.02 3.10 45.02 0.14 6.16 16 6 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 7 N -0.74 -34.85 4.31 -322.81 -1.39 -36.24 16 8 C -0.32 -16.82 9.93 84.03 0.83 -15.99 16 9 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 10 C -0.11 -6.10 5.50 84.86 0.47 -5.63 16 11 N -0.98 -60.82 13.70 21.65 0.30 -60.53 16 12 Si 1.13 51.02 29.92 68.60 2.05 53.08 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 16 C -0.14 -3.95 5.78 30.67 0.18 -3.77 16 17 C 0.12 3.30 6.09 86.36 0.53 3.83 16 18 N -0.60 -17.34 2.97 -795.06 -2.36 -19.71 16 19 C 0.51 13.91 7.49 87.65 0.66 14.56 16 20 O -0.56 -18.47 11.52 -3.06 -0.04 -18.50 16 21 C -0.10 -1.84 3.91 29.10 0.11 -1.73 16 22 C -0.11 -2.21 4.43 -19.82 -0.09 -2.29 16 23 C -0.05 -0.62 9.66 22.26 0.22 -0.40 16 24 C -0.15 -2.11 10.02 22.32 0.22 -1.89 16 25 C 0.12 2.11 7.30 22.37 0.16 2.27 16 26 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16 27 C -0.20 -4.17 10.01 22.36 0.22 -3.94 16 28 C 0.12 2.81 7.13 22.37 0.16 2.97 16 29 F -0.14 -4.02 16.66 44.97 0.75 -3.27 16 30 H 0.06 1.96 6.54 -2.39 -0.02 1.94 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.94 6.95 -2.39 -0.02 1.92 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.36 18.09 4.89 -92.71 -0.45 17.64 16 36 H 0.24 15.02 6.77 -92.71 -0.63 14.40 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.20 5.93 -2.38 -0.01 2.19 16 40 H 0.04 1.52 7.74 -2.39 -0.02 1.50 16 41 H 0.15 1.57 7.79 -2.39 -0.02 1.55 16 42 H 0.11 1.98 7.50 -2.39 -0.02 1.96 16 43 H 0.18 1.20 8.04 -2.91 -0.02 1.18 16 44 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -70.89 365.43 5.46 -65.44 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.71 Total: 29.13 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.66 Total: -7.56 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.46 Total: -116.47 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 1.53 Total: -5.11 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.08 kcal Total: -70.89 5.46 -65.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.778 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds