Wall clock time and date at job start Tue Mar 31 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58116 * 2 1 4 4 C 1.53189 * 109.59022 * 120.43185 * 2 1 3 5 5 C 1.53043 * 109.31145 * 174.42595 * 4 2 1 6 6 H 1.09006 * 109.44596 * 178.61973 * 5 4 2 7 7 N 1.46496 * 109.46276 * 58.65410 * 5 4 2 8 8 C 1.36939 * 120.00089 * 154.93314 * 7 5 4 9 9 H 1.08001 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99958 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99763 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00097 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46939 * 90.00223 * 12 10 8 14 14 H 1.48498 * 109.47068 * 209.99800 * 12 10 8 15 15 H 1.48499 * 109.47019 * 330.00269 * 12 10 8 16 16 C 1.53044 * 109.53825 * 298.63171 * 5 4 2 17 17 C 1.53189 * 109.31068 * 61.36817 * 16 5 4 18 18 N 1.46929 * 109.58775 * 239.72405 * 2 1 3 19 19 C 1.34778 * 120.62708 * 6.57898 * 18 2 1 20 20 O 1.21275 * 120.00311 * 5.78310 * 19 18 2 21 21 C 1.50703 * 119.99693 * 185.78690 * 19 18 2 22 22 C 1.50701 * 109.47278 * 179.97438 * 21 19 18 23 23 C 1.38224 * 119.98801 * 99.99737 * 22 21 19 24 24 C 1.38182 * 120.05164 * 179.97438 * 23 22 21 25 25 C 1.38493 * 120.02397 * 0.02562 * 24 23 22 26 26 F 1.35105 * 120.01448 * 179.97438 * 25 24 23 27 27 C 1.38398 * 119.97748 * 359.97438 * 25 24 23 28 28 C 1.38435 * 119.94595 * 359.72364 * 27 25 24 29 29 F 1.35103 * 120.01503 * 180.27713 * 28 27 25 30 30 H 1.09005 * 109.46344 * 174.49509 * 1 2 3 31 31 H 1.08996 * 109.47630 * 54.49493 * 1 2 3 32 32 H 1.08992 * 109.46960 * 294.48919 * 1 2 3 33 33 H 1.08998 * 109.49643 * 294.37586 * 4 2 1 34 34 H 1.08997 * 109.49594 * 54.47454 * 4 2 1 35 35 H 0.97003 * 120.00011 * 334.92840 * 7 5 4 36 36 H 0.97000 * 119.99592 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49711 * 301.41626 * 16 5 4 38 38 H 1.09000 * 109.49743 * 181.32093 * 16 5 4 39 39 H 1.09002 * 109.58862 * 185.57838 * 17 16 5 40 40 H 1.08998 * 109.58961 * 65.15090 * 17 16 5 41 41 H 1.08996 * 109.47265 * 300.00058 * 21 19 18 42 42 H 1.09007 * 109.46940 * 59.99997 * 21 19 18 43 43 H 1.07997 * 119.97710 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.98997 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.02491 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8494 1.1689 6 1 3.9378 -1.3475 2.0650 7 7 4.1571 0.4885 1.0755 8 6 5.4410 0.7023 1.5010 9 1 6.0189 -0.1153 1.9059 10 6 5.9993 1.9701 1.4129 11 7 7.2332 2.1757 1.8224 12 14 4.9995 3.3845 0.7133 13 1 4.2592 4.0577 1.8106 14 1 5.9101 4.3588 0.0601 15 1 4.0344 2.8613 -0.2867 16 6 3.9571 -1.6655 -0.0658 17 6 3.4651 -0.9450 -1.3251 18 7 2.0226 -0.6979 -1.1955 19 6 1.1673 -1.1040 -2.1547 20 8 -0.0057 -0.8035 -2.0881 21 6 1.6687 -1.9316 -3.3100 22 6 0.5218 -2.2519 -4.2336 23 6 0.3424 -1.5196 -5.3921 24 6 -0.7085 -1.8125 -6.2402 25 6 -1.5836 -2.8401 -5.9299 26 9 -2.6113 -3.1261 -6.7590 27 6 -1.4050 -3.5741 -4.7703 28 6 -0.3481 -3.2838 -3.9246 29 9 -0.1692 -4.0031 -2.7950 30 1 -0.3632 -1.0230 -0.0986 31 1 -0.3634 0.5968 -0.8365 32 1 -0.3633 0.4260 0.9352 33 1 1.7661 -0.1697 2.1365 34 1 1.6031 -1.7270 1.2889 35 1 3.6379 1.2230 0.7121 36 1 7.6235 3.0616 1.7606 37 1 3.4985 -2.6527 -0.0089 38 1 5.0414 -1.7692 -0.1062 39 1 3.6519 -1.5687 -2.1994 40 1 3.9903 0.0041 -1.4318 41 1 2.4291 -1.3720 -3.8548 42 1 2.1006 -2.8586 -2.9325 43 1 1.0241 -0.7178 -5.6346 44 1 -0.8475 -1.2399 -7.1453 45 1 -2.0867 -4.3759 -4.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044612184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:27 Heat of formation + Delta-G solvation = -71.715059 kcal Electronic energy + Delta-G solvation = -30026.434789 eV Core-core repulsion = 25680.753601 eV Total energy + Delta-G solvation = -4345.681189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.29709 -49.20860 -40.58992 -39.13575 -37.54385 -34.36262 -33.63485 -32.08521 -31.95753 -31.09499 -29.73249 -27.80171 -26.92271 -24.31273 -23.53664 -23.17523 -22.78228 -21.59892 -20.00420 -18.52258 -18.33763 -17.79522 -17.55370 -16.84204 -16.39925 -16.11761 -15.95355 -15.73206 -15.49970 -15.08658 -14.71651 -14.57567 -14.32610 -14.14143 -13.78959 -13.72439 -13.66262 -13.30575 -13.00194 -12.63189 -12.41309 -12.25424 -12.17995 -12.06471 -12.00299 -11.62894 -11.62421 -11.34128 -11.06684 -10.95871 -10.78620 -10.54729 -10.30052 -10.06680 -9.63390 -9.40287 -9.09094 -9.01908 -8.78922 -8.32465 -7.34382 -5.83541 -3.19388 0.62123 0.71376 2.67309 2.90330 3.23897 3.30138 3.34123 3.40355 3.57664 4.09927 4.21732 4.25740 4.50689 4.52179 4.59397 4.77054 5.05261 5.08379 5.13093 5.18927 5.22433 5.30833 5.44286 5.48352 5.50150 5.53149 5.56899 5.63403 5.70428 5.70988 5.85078 5.89187 5.94216 6.00757 6.13691 6.28486 6.35512 6.43053 6.46239 6.57688 6.60787 6.67438 6.91604 7.58385 7.92753 8.27644 8.35597 9.13604 9.86234 10.05866 11.34777 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.002829 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.091009 B = 9894.746149 C =10187.782639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.060 0.940 7 N -0.746 5.746 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.880 3.120 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.150 4.150 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.516 3.484 20 O -0.535 6.535 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.051 4.051 24 C -0.163 4.163 25 C 0.126 3.874 26 F -0.134 7.134 27 C -0.192 4.192 28 C 0.148 3.852 29 F -0.127 7.127 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 -11.131 -14.915 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.089 0.911 4 C -0.176 4.176 5 C 0.070 3.930 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.711 3.289 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.191 4.191 17 C -0.012 4.012 18 N -0.333 5.333 19 C 0.304 3.696 20 O -0.413 6.413 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.069 4.069 24 C -0.181 4.181 25 C 0.106 3.894 26 F -0.112 7.112 27 C -0.212 4.212 28 C 0.129 3.871 29 F -0.105 7.105 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.280 -11.019 -14.740 23.920 hybrid contribution -0.555 0.907 -0.388 1.132 sum -15.834 -10.111 -15.128 24.121 Atomic orbital electron populations 1.22194 0.93002 1.03266 1.00809 1.21243 0.95070 0.95534 0.83943 0.91127 1.22291 0.97383 1.00692 0.97209 1.20159 0.90154 0.87111 0.95608 0.92165 1.42876 1.14349 1.05267 1.76536 1.19067 0.88234 0.95907 1.34075 0.89131 1.24655 0.96057 0.97084 1.01161 1.69694 1.13506 1.22021 1.52816 0.86636 0.79613 0.83591 0.79094 1.21046 1.21724 1.20504 1.22491 1.01938 0.98038 0.96590 1.21788 0.79053 1.01667 0.98659 1.48193 1.07817 1.57218 1.20065 1.20264 0.86129 0.80152 0.83073 1.90742 1.17132 1.56826 1.76638 1.20707 0.96722 1.02117 0.94995 1.19459 0.97811 0.96269 0.96990 1.20769 0.96645 0.97587 0.91936 1.21149 0.96022 0.98633 1.02343 1.17282 0.86745 0.96367 0.88996 1.91527 1.56489 1.92841 1.70379 1.20970 1.00558 1.04192 0.95431 1.17064 0.95069 0.91638 0.83351 1.91536 1.94644 1.76105 1.48221 0.91942 0.90636 0.93931 0.90596 0.91562 0.80619 0.93032 0.92830 0.90223 0.90801 0.90066 0.87279 0.87466 0.83888 0.83981 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.61 37.16 0.28 -1.72 16 2 C 0.14 2.23 3.19 -67.60 -0.22 2.02 16 3 H 0.07 1.21 6.65 -51.93 -0.35 0.86 16 4 C -0.14 -2.07 5.07 -26.61 -0.13 -2.21 16 5 C 0.18 3.12 3.10 -67.89 -0.21 2.91 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -16.11 4.11 -53.38 -0.22 -16.33 16 8 C -0.24 -6.39 10.41 -15.06 -0.16 -6.54 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 12 Si 0.88 21.32 27.74 -169.99 -4.71 16.61 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 16 C -0.15 -2.24 5.78 -26.61 -0.15 -2.39 16 17 C 0.11 1.53 6.09 -3.71 -0.02 1.50 16 18 N -0.60 -8.58 2.97 -165.22 -0.49 -9.07 16 19 C 0.52 7.09 7.49 -10.98 -0.08 7.01 16 20 O -0.54 -8.65 11.53 5.56 0.06 -8.58 16 21 C -0.11 -1.07 3.91 -29.03 -0.11 -1.18 16 22 C -0.10 -1.08 4.43 -104.55 -0.46 -1.54 16 23 C -0.05 -0.44 9.66 -39.61 -0.38 -0.82 16 24 C -0.16 -1.36 10.02 -39.51 -0.40 -1.75 16 25 C 0.13 1.20 7.30 -39.43 -0.29 0.92 16 26 F -0.13 -1.32 17.27 2.25 0.04 -1.29 16 27 C -0.19 -1.91 10.01 -39.45 -0.39 -2.30 16 28 C 0.15 1.66 7.14 -39.43 -0.28 1.38 16 29 F -0.13 -1.56 16.65 2.25 0.04 -1.52 16 30 H 0.06 0.97 6.96 -51.93 -0.36 0.61 16 31 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.36 7.81 3.93 -40.82 -0.16 7.65 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 40 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 41 H 0.11 0.85 7.57 -51.93 -0.39 0.46 16 42 H 0.11 0.98 7.72 -51.93 -0.40 0.58 16 43 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.19 364.02 -8.23 -39.42 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.10 Total: 7.44 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.11 Total: -4.65 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.06 Total: -52.90 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.58 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.19 -8.23 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.295 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds