Wall clock time and date at job start Tue Mar 31 2020 21:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58116 * 2 1 4 4 C 1.53189 * 109.59022 * 120.43185 * 2 1 3 5 5 C 1.53043 * 109.31145 * 174.42595 * 4 2 1 6 6 H 1.09006 * 109.44596 * 178.61973 * 5 4 2 7 7 N 1.46496 * 109.46276 * 58.65410 * 5 4 2 8 8 C 1.36939 * 120.00089 * 154.93314 * 7 5 4 9 9 H 1.08001 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99958 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99763 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00097 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46939 * 90.00223 * 12 10 8 14 14 H 1.48498 * 109.47068 * 209.99800 * 12 10 8 15 15 H 1.48499 * 109.47019 * 330.00269 * 12 10 8 16 16 C 1.53044 * 109.53825 * 298.63171 * 5 4 2 17 17 C 1.53189 * 109.31068 * 61.36817 * 16 5 4 18 18 N 1.46929 * 109.58775 * 239.72405 * 2 1 3 19 19 C 1.34778 * 120.62708 * 6.57898 * 18 2 1 20 20 O 1.21275 * 120.00311 * 5.78310 * 19 18 2 21 21 C 1.50703 * 119.99693 * 185.78690 * 19 18 2 22 22 C 1.50701 * 109.47278 * 179.97438 * 21 19 18 23 23 C 1.38224 * 119.98801 * 99.99737 * 22 21 19 24 24 C 1.38182 * 120.05164 * 179.97438 * 23 22 21 25 25 C 1.38493 * 120.02397 * 0.02562 * 24 23 22 26 26 F 1.35105 * 120.01448 * 179.97438 * 25 24 23 27 27 C 1.38398 * 119.97748 * 359.97438 * 25 24 23 28 28 C 1.38435 * 119.94595 * 359.72364 * 27 25 24 29 29 F 1.35103 * 120.01503 * 180.27713 * 28 27 25 30 30 H 1.09005 * 109.46344 * 174.49509 * 1 2 3 31 31 H 1.08996 * 109.47630 * 54.49493 * 1 2 3 32 32 H 1.08992 * 109.46960 * 294.48919 * 1 2 3 33 33 H 1.08998 * 109.49643 * 294.37586 * 4 2 1 34 34 H 1.08997 * 109.49594 * 54.47454 * 4 2 1 35 35 H 0.97003 * 120.00011 * 334.92840 * 7 5 4 36 36 H 0.97000 * 119.99592 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49711 * 301.41626 * 16 5 4 38 38 H 1.09000 * 109.49743 * 181.32093 * 16 5 4 39 39 H 1.09002 * 109.58862 * 185.57838 * 17 16 5 40 40 H 1.08998 * 109.58961 * 65.15090 * 17 16 5 41 41 H 1.08996 * 109.47265 * 300.00058 * 21 19 18 42 42 H 1.09007 * 109.46940 * 59.99997 * 21 19 18 43 43 H 1.07997 * 119.97710 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.98997 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.02491 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8494 1.1689 6 1 3.9378 -1.3475 2.0650 7 7 4.1571 0.4885 1.0755 8 6 5.4410 0.7023 1.5010 9 1 6.0189 -0.1153 1.9059 10 6 5.9993 1.9701 1.4129 11 7 7.2332 2.1757 1.8224 12 14 4.9995 3.3845 0.7133 13 1 4.2592 4.0577 1.8106 14 1 5.9101 4.3588 0.0601 15 1 4.0344 2.8613 -0.2867 16 6 3.9571 -1.6655 -0.0658 17 6 3.4651 -0.9450 -1.3251 18 7 2.0226 -0.6979 -1.1955 19 6 1.1673 -1.1040 -2.1547 20 8 -0.0057 -0.8035 -2.0881 21 6 1.6687 -1.9316 -3.3100 22 6 0.5218 -2.2519 -4.2336 23 6 0.3424 -1.5196 -5.3921 24 6 -0.7085 -1.8125 -6.2402 25 6 -1.5836 -2.8401 -5.9299 26 9 -2.6113 -3.1261 -6.7590 27 6 -1.4050 -3.5741 -4.7703 28 6 -0.3481 -3.2838 -3.9246 29 9 -0.1692 -4.0031 -2.7950 30 1 -0.3632 -1.0230 -0.0986 31 1 -0.3634 0.5968 -0.8365 32 1 -0.3633 0.4260 0.9352 33 1 1.7661 -0.1697 2.1365 34 1 1.6031 -1.7270 1.2889 35 1 3.6379 1.2230 0.7121 36 1 7.6235 3.0616 1.7606 37 1 3.4985 -2.6527 -0.0089 38 1 5.0414 -1.7692 -0.1062 39 1 3.6519 -1.5687 -2.1994 40 1 3.9903 0.0041 -1.4318 41 1 2.4291 -1.3720 -3.8548 42 1 2.1006 -2.8586 -2.9325 43 1 1.0241 -0.7178 -5.6346 44 1 -0.8475 -1.2399 -7.1453 45 1 -2.0867 -4.3759 -4.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044612184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:26 Heat of formation + Delta-G solvation = -88.784942 kcal Electronic energy + Delta-G solvation = -30027.174995 eV Core-core repulsion = 25680.753601 eV Total energy + Delta-G solvation = -4346.421394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.04760 -50.02043 -41.67801 -39.93680 -38.77039 -35.93447 -34.63012 -33.79936 -32.99636 -31.78755 -31.41637 -28.80894 -27.97989 -25.67645 -24.95136 -24.23579 -23.71624 -22.62380 -21.21929 -19.78922 -19.60681 -19.21983 -18.31072 -17.85426 -17.33267 -16.92017 -16.83905 -16.77399 -16.49018 -16.31905 -16.08076 -15.69491 -15.40679 -15.23530 -15.04483 -14.81614 -14.73717 -14.58123 -14.33441 -13.97486 -13.73621 -13.35164 -13.12006 -12.98561 -12.93553 -12.88871 -12.76255 -12.54813 -12.51204 -12.33836 -12.09737 -11.98857 -11.90756 -11.69369 -11.42743 -10.94327 -10.20675 -10.01322 -9.61312 -9.53821 -9.24298 -7.98587 -5.30354 -0.10391 0.02211 1.37182 1.40020 1.46678 1.65026 1.96749 2.40241 2.49563 2.85923 3.33382 3.37422 3.50481 3.56760 3.60169 3.62246 3.88817 3.94862 3.96358 4.05311 4.11811 4.27615 4.32951 4.42010 4.47242 4.51144 4.62177 4.74579 4.78831 4.81767 4.86453 4.89892 4.93992 5.04546 5.05590 5.11302 5.20639 5.23696 5.25127 5.32444 5.40635 5.71827 5.75595 5.83874 6.25589 6.51310 7.12066 7.22158 7.88705 8.06931 9.23200 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.002829 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.091009 B = 9894.746149 C =10187.782639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.143 3.857 3 H 0.053 0.947 4 C -0.126 4.126 5 C 0.170 3.830 6 H 0.048 0.952 7 N -0.746 5.746 8 C -0.216 4.216 9 H 0.061 0.939 10 C -0.061 4.061 11 N -0.984 5.984 12 Si 0.944 3.056 13 H -0.285 1.285 14 H -0.298 1.298 15 H -0.255 1.255 16 C -0.143 4.143 17 C 0.115 3.885 18 N -0.602 5.602 19 C 0.513 3.487 20 O -0.561 6.561 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.050 4.050 24 C -0.156 4.156 25 C 0.114 3.886 26 F -0.138 7.138 27 C -0.199 4.199 28 C 0.126 3.874 29 F -0.139 7.139 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.362 0.638 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.170 0.830 44 H 0.167 0.833 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.291 -11.470 -16.977 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.164 4.164 5 C 0.062 3.938 6 H 0.066 0.934 7 N -0.390 5.390 8 C -0.347 4.347 9 H 0.079 0.921 10 C -0.253 4.253 11 N -0.636 5.636 12 Si 0.773 3.227 13 H -0.212 1.212 14 H -0.225 1.225 15 H -0.179 1.179 16 C -0.183 4.183 17 C -0.007 4.007 18 N -0.335 5.335 19 C 0.303 3.697 20 O -0.441 6.441 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.068 4.068 24 C -0.175 4.175 25 C 0.095 3.905 26 F -0.117 7.117 27 C -0.219 4.219 28 C 0.106 3.894 29 F -0.118 7.118 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.196 0.804 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.156 0.844 42 H 0.138 0.862 43 H 0.188 0.812 44 H 0.184 0.816 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.743 -11.410 -16.825 26.336 hybrid contribution -0.172 0.896 0.268 0.951 sum -16.915 -10.514 -16.556 25.899 Atomic orbital electron populations 1.22021 0.92448 1.02526 1.00834 1.21162 0.95363 0.94829 0.84677 0.92866 1.22175 0.95318 1.01694 0.97263 1.20403 0.91595 0.85283 0.96480 0.93399 1.42854 1.12716 1.07216 1.76262 1.19019 0.89514 0.94702 1.31510 0.92069 1.25353 0.97129 0.99882 1.02889 1.69865 1.15688 1.22365 1.55648 0.85581 0.78299 0.80107 0.78732 1.21152 1.22546 1.17933 1.22350 1.01250 0.98923 0.95780 1.21771 0.78465 1.01021 0.99489 1.48221 1.08041 1.57272 1.19958 1.20862 0.85657 0.79772 0.83415 1.90738 1.18314 1.57772 1.77277 1.20759 0.97265 1.02312 0.93738 1.19621 0.97856 0.96296 0.97700 1.21110 0.96893 0.97641 0.91124 1.21470 0.95158 0.97894 1.02971 1.17464 0.87088 0.96963 0.88981 1.91517 1.56758 1.92952 1.70434 1.21103 1.00567 1.04593 0.95591 1.17311 0.96081 0.92499 0.83460 1.91498 1.94811 1.76533 1.48926 0.92711 0.91895 0.92863 0.90696 0.89835 0.80373 0.93563 0.90288 0.91686 0.86837 0.92438 0.84368 0.86184 0.81248 0.81554 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.38 7.61 71.98 0.55 -2.83 16 2 C 0.14 4.13 3.19 44.97 0.14 4.28 16 3 H 0.05 1.73 6.65 -2.39 -0.02 1.72 16 4 C -0.13 -3.57 5.07 30.67 0.16 -3.41 16 5 C 0.17 5.73 3.10 45.02 0.14 5.87 16 6 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 7 N -0.75 -31.65 4.11 -322.80 -1.33 -32.98 16 8 C -0.22 -11.49 10.41 84.03 0.87 -10.61 16 9 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 10 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 11 N -0.98 -61.27 13.97 21.65 0.30 -60.97 16 12 Si 0.94 44.18 27.74 68.60 1.90 46.09 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 15 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 16 C -0.14 -3.96 5.78 30.67 0.18 -3.78 16 17 C 0.11 2.83 6.09 86.36 0.53 3.36 16 18 N -0.60 -15.62 2.97 -795.02 -2.36 -17.98 16 19 C 0.51 12.68 7.49 87.66 0.66 13.34 16 20 O -0.56 -17.05 11.53 -3.01 -0.03 -17.09 16 21 C -0.10 -1.69 3.91 29.10 0.11 -1.57 16 22 C -0.11 -2.04 4.43 -19.82 -0.09 -2.13 16 23 C -0.05 -0.69 9.66 22.25 0.22 -0.48 16 24 C -0.16 -2.16 10.02 22.32 0.22 -1.93 16 25 C 0.11 2.00 7.30 22.37 0.16 2.16 16 26 F -0.14 -2.53 17.27 44.97 0.78 -1.76 16 27 C -0.20 -3.74 10.01 22.35 0.22 -3.51 16 28 C 0.13 2.62 7.14 22.37 0.16 2.78 16 29 F -0.14 -3.28 16.65 44.97 0.75 -2.53 16 30 H 0.05 1.61 6.96 -2.38 -0.02 1.59 16 31 H 0.06 1.93 6.54 -2.39 -0.02 1.91 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.36 15.19 3.93 -92.71 -0.36 14.82 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 37 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 1.91 5.93 -2.39 -0.01 1.89 16 40 H 0.06 1.73 7.74 -2.39 -0.02 1.71 16 41 H 0.14 1.49 7.57 -2.39 -0.02 1.47 16 42 H 0.12 1.73 7.72 -2.38 -0.02 1.71 16 43 H 0.17 1.39 8.04 -2.91 -0.02 1.37 16 44 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.05 364.02 5.30 -63.75 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.60 Total: 24.94 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.70 Total: -1.47 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.39 Total: -111.93 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.03 Total: -17.09 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.53 Total: -4.28 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.09 kcal Total: -69.05 5.30 -63.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044612184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.035 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds