Wall clock time and date at job start Tue Mar 31 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53195 * 109.58572 * 239.72363 * 2 1 3 5 5 C 1.53346 * 109.15012 * 294.71732 * 4 2 1 6 6 H 1.08998 * 109.42567 * 58.74792 * 5 4 2 7 7 N 1.46501 * 109.42063 * 178.67844 * 5 4 2 8 8 C 1.36941 * 119.99689 * 205.12766 * 7 5 4 9 9 H 1.08000 * 120.00102 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99836 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99626 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00163 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47223 * 60.00194 * 12 10 8 14 14 H 1.48502 * 109.47194 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46779 * 300.00217 * 12 10 8 16 16 C 1.53051 * 109.60398 * 298.71431 * 5 4 2 17 17 C 1.53182 * 109.31442 * 61.37315 * 16 5 4 18 18 N 1.46923 * 108.77876 * 305.36697 * 17 16 5 19 19 C 1.34783 * 120.62869 * 233.59133 * 18 17 16 20 20 O 1.21279 * 119.99870 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99977 * 0.02562 * 19 18 17 22 22 C 1.50699 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38415 * 120.02917 * 269.73244 * 22 21 19 24 24 F 1.35102 * 120.00916 * 359.96662 * 23 22 21 25 25 C 1.38478 * 119.97429 * 179.70134 * 23 22 21 26 26 C 1.38205 * 120.02554 * 0.59304 * 25 23 22 27 27 C 1.38206 * 120.04928 * 359.67445 * 26 25 23 28 28 C 1.38424 * 120.02162 * 90.00053 * 22 21 19 29 29 F 1.35105 * 120.01496 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.99350 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99522 * 1 2 3 33 33 H 1.08999 * 109.49677 * 54.79976 * 4 2 1 34 34 H 1.09007 * 109.49774 * 174.89474 * 4 2 1 35 35 H 0.96998 * 119.99811 * 25.12353 * 7 5 4 36 36 H 0.97008 * 119.99694 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.49865 * 301.41515 * 16 5 4 38 38 H 1.09003 * 109.52083 * 181.33921 * 16 5 4 39 39 H 1.08998 * 109.58955 * 185.57048 * 17 16 5 40 40 H 1.09011 * 109.70513 * 65.22022 * 17 16 5 41 41 H 1.09000 * 109.46865 * 300.00520 * 21 19 18 42 42 H 1.08998 * 109.47159 * 60.00423 * 21 19 18 43 43 H 1.08003 * 119.98363 * 180.30786 * 25 23 22 44 44 H 1.07998 * 119.97163 * 179.70493 * 26 25 23 45 45 H 1.08000 * 119.98803 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6415 -2.2054 -1.1677 6 1 0.5566 -2.2826 -1.0966 7 7 2.1024 -2.9005 -2.3721 8 6 1.4641 -4.0364 -2.7936 9 1 0.6213 -4.4200 -2.2379 10 6 1.9005 -4.6948 -3.9350 11 7 2.9281 -4.2274 -4.6120 12 14 1.0295 -6.2438 -4.5105 13 1 -0.3942 -5.9337 -4.7974 14 1 1.6842 -6.7511 -5.7431 15 1 1.1063 -7.2785 -3.4480 16 6 2.2801 -2.8462 0.0668 17 6 1.7693 -2.1394 1.3261 18 7 2.0225 -0.6981 1.1953 19 6 2.6937 -0.0290 2.1536 20 8 2.8960 1.1608 2.0341 21 6 3.1928 -0.7594 3.3737 22 6 3.9050 0.2090 4.2825 23 6 5.2662 0.4176 4.1422 24 9 5.9571 -0.2476 3.1907 25 6 5.9184 1.3123 4.9738 26 6 5.2130 1.9879 5.9517 27 6 3.8549 1.7763 6.0963 28 6 3.1994 0.8866 5.2619 29 9 1.8717 0.6804 5.4032 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6074 -0.2755 -2.1372 34 1 3.1297 -0.6486 -1.2923 35 1 2.8596 -2.5561 -2.8710 36 1 3.2328 -4.6873 -5.4099 37 1 3.3640 -2.7474 0.0084 38 1 2.0129 -3.9022 0.1085 39 1 2.2945 -2.5249 2.2000 40 1 0.6989 -2.3138 1.4369 41 1 2.3488 -1.2015 3.9030 42 1 3.8831 -1.5460 3.0692 43 1 6.9795 1.4789 4.8612 44 1 5.7234 2.6819 6.6029 45 1 3.3046 2.3050 6.8605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:30 Heat of formation + Delta-G solvation = -90.874963 kcal Electronic energy + Delta-G solvation = -29745.731910 eV Core-core repulsion = 25399.219885 eV Total energy + Delta-G solvation = -4346.512024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.25702 -49.20563 -40.36368 -39.05380 -37.55326 -34.53992 -33.55567 -32.21098 -31.79581 -30.58346 -29.40235 -27.91708 -27.25691 -24.22566 -23.16567 -23.02483 -22.93865 -21.53152 -20.29501 -18.44847 -18.25942 -17.63917 -17.41477 -16.99527 -16.37897 -16.09403 -15.84188 -15.49586 -15.45387 -15.18796 -14.89791 -14.66461 -14.06555 -13.98001 -13.83543 -13.50072 -13.36044 -13.13543 -13.04679 -12.77104 -12.68480 -12.36367 -12.24259 -11.87640 -11.79082 -11.69767 -11.56858 -11.25780 -10.93037 -10.87308 -10.76027 -10.46508 -10.24066 -9.86543 -9.72725 -9.61756 -9.13492 -9.03396 -8.91139 -8.49357 -6.99130 -5.78671 -3.08001 0.65367 0.68835 2.65411 2.90483 3.19980 3.41672 3.46270 3.47466 3.61697 4.09759 4.11597 4.33558 4.47150 4.54113 4.57191 4.82168 5.03043 5.07289 5.14374 5.18231 5.26603 5.33092 5.44876 5.48656 5.57547 5.58737 5.60209 5.63873 5.72182 5.76252 5.81586 5.82595 5.90982 6.07387 6.18121 6.29379 6.38261 6.44092 6.47300 6.53739 6.63938 6.89336 7.03981 7.50930 7.66183 8.21339 8.39573 9.50605 10.08428 10.43010 11.43784 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002592 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.231793 B =10799.517192 C =11274.430873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.133 4.133 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.104 3.896 18 N -0.598 5.598 19 C 0.521 3.479 20 O -0.543 6.543 21 C -0.104 4.104 22 C -0.134 4.134 23 C 0.143 3.857 24 F -0.126 7.126 25 C -0.164 4.164 26 C -0.063 4.063 27 C -0.165 4.165 28 C 0.141 3.859 29 F -0.129 7.129 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 11.274 23.370 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.172 4.172 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.331 5.331 19 C 0.308 3.692 20 O -0.421 6.421 21 C -0.144 4.144 22 C -0.136 4.136 23 C 0.123 3.877 24 F -0.105 7.105 25 C -0.183 4.183 26 C -0.082 4.082 27 C -0.184 4.184 28 C 0.122 3.878 29 F -0.107 7.107 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.014 11.704 23.188 26.052 hybrid contribution -0.267 -1.137 -0.726 1.375 sum 1.748 10.567 22.461 24.884 Atomic orbital electron populations 1.22138 0.95009 1.02765 1.01886 1.21188 0.94019 0.97107 0.83858 0.88754 1.22269 1.01351 0.97228 0.96362 1.20247 0.96756 0.89066 0.87014 0.93090 1.42432 1.37891 1.29316 1.26772 1.19175 1.10213 1.01161 1.06576 0.91252 1.24751 0.98482 0.99472 0.98200 1.69658 1.27501 1.41382 1.19494 0.86287 0.78835 0.83234 0.77926 1.21273 1.21717 1.21289 1.22681 1.01305 1.00496 0.94786 1.21893 1.01061 0.79240 0.99694 1.48203 1.55018 1.09621 1.20301 1.20213 0.77869 0.87365 0.83745 1.90681 1.57543 1.15137 1.78699 1.20569 1.01961 0.97764 0.94110 1.19330 0.92950 1.02298 0.99003 1.17182 0.88656 0.93560 0.88279 1.91550 1.78761 1.78439 1.61700 1.21192 1.01666 0.98240 0.97186 1.20826 0.92959 0.97762 0.96612 1.21162 0.95664 1.00151 1.01405 1.17148 0.77713 0.96926 0.96052 1.91522 1.30701 1.93559 1.94947 0.92923 0.91626 0.91330 0.90525 0.91878 0.78278 0.93438 0.92131 0.90568 0.90613 0.91254 0.87169 0.86957 0.83932 0.83918 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.02 37.16 0.34 -1.76 16 2 C 0.14 2.10 3.20 -67.60 -0.22 1.89 16 3 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 4 C -0.13 -2.24 5.05 -26.45 -0.13 -2.38 16 5 C 0.18 3.39 2.53 -67.72 -0.17 3.21 16 6 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 7 N -0.72 -17.66 5.12 -53.23 -0.27 -17.93 16 8 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 12 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.10 1.34 5.92 -3.72 -0.02 1.32 16 18 N -0.60 -8.54 2.68 -165.23 -0.44 -8.98 16 19 C 0.52 7.74 7.69 -10.98 -0.08 7.66 16 20 O -0.54 -9.79 15.45 5.56 0.09 -9.70 16 21 C -0.10 -1.21 3.83 -29.04 -0.11 -1.32 16 22 C -0.13 -1.57 4.38 -104.49 -0.46 -2.03 16 23 C 0.14 1.63 7.24 -39.43 -0.29 1.34 16 24 F -0.13 -1.61 16.47 2.25 0.04 -1.58 16 25 C -0.16 -1.41 10.03 -39.51 -0.40 -1.81 16 26 C -0.06 -0.45 10.04 -39.61 -0.40 -0.84 16 27 C -0.16 -1.36 10.02 -39.51 -0.40 -1.75 16 28 C 0.14 1.53 7.24 -39.43 -0.29 1.25 16 29 F -0.13 -1.49 16.48 2.25 0.04 -1.45 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.87 5.72 -51.93 -0.30 0.57 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 40 H 0.07 0.82 7.50 -51.92 -0.39 0.43 16 41 H 0.11 1.06 7.44 -51.93 -0.39 0.67 16 42 H 0.11 1.19 7.18 -51.93 -0.37 0.81 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -32.58 371.60 -8.39 -40.98 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.12 Total: 8.19 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.02 Total: -4.96 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.01 Total: -54.11 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.58 -8.39 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.897 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds