Wall clock time and date at job start Tue Mar 31 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53195 * 109.58572 * 239.72363 * 2 1 3 5 5 C 1.53346 * 109.15012 * 294.71732 * 4 2 1 6 6 H 1.08998 * 109.42567 * 58.74792 * 5 4 2 7 7 N 1.46501 * 109.42063 * 178.67844 * 5 4 2 8 8 C 1.36941 * 119.99689 * 205.12766 * 7 5 4 9 9 H 1.08000 * 120.00102 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99836 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99626 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00163 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47223 * 60.00194 * 12 10 8 14 14 H 1.48502 * 109.47194 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46779 * 300.00217 * 12 10 8 16 16 C 1.53051 * 109.60398 * 298.71431 * 5 4 2 17 17 C 1.53182 * 109.31442 * 61.37315 * 16 5 4 18 18 N 1.46923 * 108.77876 * 305.36697 * 17 16 5 19 19 C 1.34783 * 120.62869 * 233.59133 * 18 17 16 20 20 O 1.21279 * 119.99870 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99977 * 0.02562 * 19 18 17 22 22 C 1.50699 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38415 * 120.02917 * 269.73244 * 22 21 19 24 24 F 1.35102 * 120.00916 * 359.96662 * 23 22 21 25 25 C 1.38478 * 119.97429 * 179.70134 * 23 22 21 26 26 C 1.38205 * 120.02554 * 0.59304 * 25 23 22 27 27 C 1.38206 * 120.04928 * 359.67445 * 26 25 23 28 28 C 1.38424 * 120.02162 * 90.00053 * 22 21 19 29 29 F 1.35105 * 120.01496 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.47153 * 299.99350 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99522 * 1 2 3 33 33 H 1.08999 * 109.49677 * 54.79976 * 4 2 1 34 34 H 1.09007 * 109.49774 * 174.89474 * 4 2 1 35 35 H 0.96998 * 119.99811 * 25.12353 * 7 5 4 36 36 H 0.97008 * 119.99694 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.49865 * 301.41515 * 16 5 4 38 38 H 1.09003 * 109.52083 * 181.33921 * 16 5 4 39 39 H 1.08998 * 109.58955 * 185.57048 * 17 16 5 40 40 H 1.09011 * 109.70513 * 65.22022 * 17 16 5 41 41 H 1.09000 * 109.46865 * 300.00520 * 21 19 18 42 42 H 1.08998 * 109.47159 * 60.00423 * 21 19 18 43 43 H 1.08003 * 119.98363 * 180.30786 * 25 23 22 44 44 H 1.07998 * 119.97163 * 179.70493 * 26 25 23 45 45 H 1.08000 * 119.98803 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6415 -2.2054 -1.1677 6 1 0.5566 -2.2826 -1.0966 7 7 2.1024 -2.9005 -2.3721 8 6 1.4641 -4.0364 -2.7936 9 1 0.6213 -4.4200 -2.2379 10 6 1.9005 -4.6948 -3.9350 11 7 2.9281 -4.2274 -4.6120 12 14 1.0295 -6.2438 -4.5105 13 1 -0.3942 -5.9337 -4.7974 14 1 1.6842 -6.7511 -5.7431 15 1 1.1063 -7.2785 -3.4480 16 6 2.2801 -2.8462 0.0668 17 6 1.7693 -2.1394 1.3261 18 7 2.0225 -0.6981 1.1953 19 6 2.6937 -0.0290 2.1536 20 8 2.8960 1.1608 2.0341 21 6 3.1928 -0.7594 3.3737 22 6 3.9050 0.2090 4.2825 23 6 5.2662 0.4176 4.1422 24 9 5.9571 -0.2476 3.1907 25 6 5.9184 1.3123 4.9738 26 6 5.2130 1.9879 5.9517 27 6 3.8549 1.7763 6.0963 28 6 3.1994 0.8866 5.2619 29 9 1.8717 0.6804 5.4032 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6074 -0.2755 -2.1372 34 1 3.1297 -0.6486 -1.2923 35 1 2.8596 -2.5561 -2.8710 36 1 3.2328 -4.6873 -5.4099 37 1 3.3640 -2.7474 0.0084 38 1 2.0129 -3.9022 0.1085 39 1 2.2945 -2.5249 2.2000 40 1 0.6989 -2.3138 1.4369 41 1 2.3488 -1.2015 3.9030 42 1 3.8831 -1.5460 3.0692 43 1 6.9795 1.4789 4.8612 44 1 5.7234 2.6819 6.6029 45 1 3.3046 2.3050 6.8605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:29 Heat of formation + Delta-G solvation = -109.556460 kcal Electronic energy + Delta-G solvation = -29746.542000 eV Core-core repulsion = 25399.219885 eV Total energy + Delta-G solvation = -4347.322115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.06952 -50.04681 -41.53331 -39.84921 -38.82816 -36.24390 -34.54982 -33.71097 -33.13243 -31.26241 -31.06452 -28.91200 -28.48823 -25.97583 -24.42974 -23.93104 -23.88396 -22.80225 -21.51943 -19.73217 -19.15907 -18.92645 -18.48178 -18.41501 -17.28589 -16.96174 -16.69717 -16.62487 -16.46571 -16.34027 -16.27555 -15.67996 -15.48378 -15.33128 -14.99896 -14.89970 -14.70738 -14.31798 -14.10934 -13.91107 -13.76136 -13.34068 -13.19618 -13.00046 -12.93595 -12.84069 -12.73722 -12.63290 -12.48806 -12.29523 -12.21881 -12.09461 -11.97285 -11.70063 -11.13799 -11.01536 -10.84248 -9.89539 -9.75008 -9.71011 -9.00582 -7.92338 -5.21280 -0.05146 -0.01517 1.48263 1.50952 1.51083 1.56921 1.90292 2.40512 2.57369 2.88676 3.30971 3.40768 3.41026 3.48403 3.62397 3.77580 3.86332 3.89338 3.99882 4.08397 4.21955 4.22969 4.32809 4.33993 4.36294 4.51092 4.56601 4.61280 4.74126 4.82388 4.82972 4.84113 4.99969 5.02744 5.03682 5.05268 5.05942 5.20387 5.23595 5.31335 5.51726 5.54013 5.62077 5.78202 6.28819 6.36077 7.05922 7.34809 8.10564 8.33694 9.31252 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002592 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.231793 B =10799.517192 C =11274.430873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.176 3.824 6 H 0.056 0.944 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.080 0.920 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.276 1.276 16 C -0.142 4.142 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.517 3.483 20 O -0.579 6.579 21 C -0.100 4.100 22 C -0.155 4.155 23 C 0.112 3.888 24 F -0.143 7.143 25 C -0.163 4.163 26 C -0.052 4.052 27 C -0.160 4.160 28 C 0.119 3.881 29 F -0.138 7.138 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.163 0.837 44 H 0.184 0.816 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 11.614 26.235 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.067 3.933 6 H 0.074 0.926 7 N -0.377 5.377 8 C -0.365 4.365 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.202 1.202 16 C -0.183 4.183 17 C -0.012 4.012 18 N -0.332 5.332 19 C 0.306 3.694 20 O -0.459 6.459 21 C -0.140 4.140 22 C -0.157 4.157 23 C 0.093 3.907 24 F -0.122 7.122 25 C -0.181 4.181 26 C -0.069 4.069 27 C -0.178 4.178 28 C 0.100 3.900 29 F -0.116 7.116 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.181 0.819 44 H 0.202 0.798 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.108 12.039 26.111 28.774 hybrid contribution 0.037 -1.123 -1.529 1.898 sum 1.144 10.916 24.582 26.921 Atomic orbital electron populations 1.22070 0.93133 1.03077 1.02715 1.21066 0.95357 0.96171 0.83208 0.89898 1.22127 1.00202 0.96286 0.97549 1.20479 0.97015 0.89751 0.86009 0.92565 1.42670 1.37404 1.29219 1.28442 1.19595 1.09730 1.01246 1.05975 0.90173 1.25565 0.99692 1.02875 0.98980 1.69831 1.29558 1.42983 1.20043 0.85240 0.77834 0.79805 0.77065 1.20356 1.22689 1.20236 1.22467 1.00088 1.00312 0.95437 1.21951 1.02583 0.77924 0.98707 1.48278 1.54805 1.10137 1.19958 1.20800 0.77034 0.87127 0.84463 1.90654 1.58778 1.16871 1.79600 1.20585 1.02817 0.97737 0.92834 1.19433 0.93334 1.03190 0.99718 1.17569 0.88983 0.94996 0.89156 1.91500 1.79052 1.79036 1.62575 1.21568 1.02852 0.97097 0.96601 1.21322 0.92474 0.97160 0.95961 1.21575 0.96352 0.98927 1.00967 1.17443 0.77554 0.98067 0.96949 1.91492 1.31282 1.93767 1.95068 0.92023 0.91444 0.90644 0.91001 0.93643 0.79998 0.94220 0.93810 0.91183 0.87537 0.89191 0.85072 0.86210 0.81903 0.79849 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.02 71.98 0.65 -3.09 16 2 C 0.15 4.28 3.20 44.98 0.14 4.42 16 3 H 0.08 2.67 7.00 -2.39 -0.02 2.65 16 4 C -0.12 -4.20 5.05 30.78 0.16 -4.04 16 5 C 0.18 6.61 2.53 45.12 0.11 6.72 16 6 H 0.06 2.08 6.43 -2.39 -0.02 2.06 16 7 N -0.74 -36.61 5.12 -322.31 -1.65 -38.26 16 8 C -0.23 -12.60 9.93 84.03 0.83 -11.77 16 9 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 11 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 12 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 C -0.14 -4.60 5.66 30.67 0.17 -4.43 16 17 C 0.11 2.62 5.92 86.36 0.51 3.13 16 18 N -0.60 -16.52 2.68 -795.04 -2.13 -18.65 16 19 C 0.52 15.07 7.69 87.66 0.67 15.74 16 20 O -0.58 -21.00 15.45 -3.03 -0.05 -21.04 16 21 C -0.10 -2.23 3.83 29.10 0.11 -2.12 16 22 C -0.15 -3.52 4.38 -19.78 -0.09 -3.61 16 23 C 0.11 2.50 7.24 22.37 0.16 2.66 16 24 F -0.14 -3.71 16.47 44.97 0.74 -2.97 16 25 C -0.16 -2.47 10.03 22.32 0.22 -2.24 16 26 C -0.05 -0.55 10.04 22.25 0.22 -0.33 16 27 C -0.16 -2.19 10.02 22.32 0.22 -1.96 16 28 C 0.12 2.42 7.24 22.37 0.16 2.58 16 29 F -0.14 -3.00 16.48 44.97 0.74 -2.26 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.64 5.72 -2.39 -0.01 1.62 16 32 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 36 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.11 1.92 5.93 -2.39 -0.01 1.91 16 40 H 0.09 1.84 7.50 -2.38 -0.02 1.82 16 41 H 0.13 2.27 7.44 -2.39 -0.02 2.25 16 42 H 0.12 2.42 7.18 -2.39 -0.02 2.41 16 43 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 45 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -72.65 371.60 5.01 -67.64 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.30 Total: 29.83 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.74 Total: -2.37 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.50 Total: -116.45 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.48 Total: -5.23 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.65 5.01 -67.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.918 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds