Wall clock time and date at job start Tue Mar 31 2020 21:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.58405 * 2 1 4 4 C 1.53194 * 109.58880 * 120.42687 * 2 1 3 5 5 C 1.53034 * 109.31439 * 174.42622 * 4 2 1 6 6 H 1.09002 * 109.46040 * 178.62957 * 5 4 2 7 7 N 1.46494 * 109.46361 * 58.65711 * 5 4 2 8 8 C 1.36940 * 120.00342 * 155.00306 * 7 5 4 9 9 H 1.07997 * 119.99824 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99993 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00143 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00012 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47200 * 90.00520 * 12 10 8 14 14 H 1.48502 * 109.47211 * 209.99846 * 12 10 8 15 15 H 1.48493 * 109.47381 * 330.00231 * 12 10 8 16 16 C 1.53039 * 109.53799 * 298.63150 * 5 4 2 17 17 C 1.52761 * 109.38094 * 61.24191 * 16 5 4 18 18 N 1.46919 * 109.58915 * 239.71275 * 2 1 3 19 19 C 1.34774 * 120.63093 * 6.58763 * 18 2 1 20 20 O 1.21287 * 119.99732 * 354.93584 * 19 18 2 21 21 C 1.50701 * 120.00296 * 174.94578 * 19 18 2 22 22 C 1.50697 * 109.47219 * 179.97438 * 21 19 18 23 23 C 1.38421 * 120.02389 * 269.72557 * 22 21 19 24 24 F 1.35096 * 120.01399 * 359.97143 * 23 22 21 25 25 C 1.38479 * 119.97373 * 179.70462 * 23 22 21 26 26 C 1.38208 * 120.02404 * 0.58598 * 25 23 22 27 27 C 1.38208 * 120.05005 * 359.68993 * 26 25 23 28 28 C 1.38420 * 120.02852 * 89.99669 * 22 21 19 29 29 F 1.35100 * 120.01159 * 359.97438 * 28 22 21 30 30 H 1.09003 * 109.47091 * 175.96107 * 1 2 3 31 31 H 1.08994 * 109.47215 * 295.95440 * 1 2 3 32 32 H 1.08998 * 109.46944 * 55.95942 * 1 2 3 33 33 H 1.09008 * 109.49864 * 294.37906 * 4 2 1 34 34 H 1.09001 * 109.49764 * 54.46636 * 4 2 1 35 35 H 0.97004 * 119.99637 * 334.99682 * 7 5 4 36 36 H 0.96999 * 120.00005 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.50016 * 181.31983 * 16 5 4 38 38 H 1.09006 * 109.49567 * 301.38271 * 16 5 4 39 39 H 1.09002 * 109.50891 * 185.71067 * 17 16 5 40 40 H 1.08990 * 109.43092 * 65.42521 * 17 16 5 41 41 H 1.08997 * 109.47554 * 59.99576 * 21 19 18 42 42 H 1.08999 * 109.46785 * 299.99237 * 21 19 18 43 43 H 1.08000 * 119.98762 * 180.32336 * 25 23 22 44 44 H 1.08002 * 119.97323 * 179.70610 * 26 25 23 45 45 H 1.08000 * 119.98395 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1691 6 1 3.9378 -1.3475 2.0651 7 7 4.1570 0.4885 1.0757 8 6 5.4414 0.7020 1.5000 9 1 6.0196 -0.1159 1.9039 10 6 6.0001 1.9695 1.4109 11 7 7.2344 2.1749 1.8192 12 14 5.0002 3.3840 0.7116 13 1 4.2611 4.0580 1.8093 14 1 5.9105 4.3577 0.0571 15 1 4.0340 2.8609 -0.2873 16 6 3.9570 -1.6655 -0.0655 17 6 3.4645 -0.9502 -1.3222 18 7 2.0226 -0.6981 -1.1952 19 6 1.1674 -1.1043 -2.1545 20 8 -0.0281 -0.9773 -1.9944 21 6 1.6967 -1.7164 -3.4258 22 6 0.5440 -2.0822 -4.3250 23 6 -0.0298 -3.3390 -4.2389 24 9 0.4437 -4.2385 -3.3490 25 6 -1.0929 -3.6720 -5.0614 26 6 -1.5732 -2.7542 -5.9764 27 6 -0.9974 -1.5011 -6.0672 28 6 0.0618 -1.1638 -5.2415 29 9 0.6241 0.0614 -5.3301 30 1 -0.3633 -1.0251 -0.0724 31 1 -0.3633 0.4497 0.9240 32 1 -0.3633 0.5753 -0.8516 33 1 1.7660 -0.1695 2.1367 34 1 1.6030 -1.7269 1.2892 35 1 3.6375 1.2231 0.7132 36 1 7.6247 3.0607 1.7573 37 1 5.0412 -1.7694 -0.1058 38 1 3.4988 -2.6530 -0.0081 39 1 3.6504 -1.5770 -2.1943 40 1 3.9929 -0.0031 -1.4309 41 1 2.2692 -2.6126 -3.1868 42 1 2.3406 -0.9986 -3.9340 43 1 -1.5442 -4.6506 -4.9907 44 1 -2.3993 -3.0165 -6.6207 45 1 -1.3738 -0.7847 -6.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:33 Heat of formation + Delta-G solvation = -69.509524 kcal Electronic energy + Delta-G solvation = -30443.693148 eV Core-core repulsion = 26098.107598 eV Total energy + Delta-G solvation = -4345.585549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.23425 -49.21883 -40.52929 -39.06756 -37.55924 -34.34005 -33.78888 -32.18845 -31.95929 -30.58030 -29.73903 -28.05205 -26.97481 -24.30029 -23.17761 -23.15435 -22.91521 -21.61611 -19.99451 -18.48872 -18.28587 -17.77889 -17.62364 -16.87175 -16.39999 -15.97604 -15.84164 -15.71213 -15.48628 -15.33555 -14.66447 -14.63841 -14.30063 -14.06825 -13.67289 -13.61236 -13.36729 -13.26745 -13.04346 -12.68955 -12.47498 -12.24028 -12.23350 -12.14493 -11.89760 -11.68948 -11.53552 -11.33698 -11.03507 -10.94142 -10.75776 -10.51864 -10.26787 -10.03015 -9.61278 -9.30488 -9.03172 -9.00044 -8.84159 -8.29052 -7.32197 -5.81513 -3.17293 0.66298 0.69131 2.69806 2.93435 3.23765 3.32832 3.36386 3.42433 3.62339 4.12073 4.12177 4.34746 4.47478 4.54410 4.61195 4.82461 5.06425 5.10363 5.14441 5.18841 5.24000 5.32925 5.46285 5.52348 5.55567 5.59006 5.60633 5.62934 5.72484 5.73634 5.82698 5.87804 5.96919 6.03585 6.17378 6.30794 6.37603 6.44323 6.47931 6.59998 6.64191 6.69779 6.94161 7.60038 7.94793 8.29292 8.37668 9.15668 9.88375 10.08052 11.36826 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.003254 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.673600 B = 8603.295113 C = 9055.995403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.144 3.856 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.061 0.939 7 N -0.747 5.747 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.880 3.120 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.149 4.149 17 C 0.111 3.889 18 N -0.599 5.599 19 C 0.519 3.481 20 O -0.536 6.536 21 C -0.108 4.108 22 C -0.131 4.131 23 C 0.142 3.858 24 F -0.128 7.128 25 C -0.164 4.164 26 C -0.064 4.064 27 C -0.164 4.164 28 C 0.142 3.858 29 F -0.128 7.128 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.935 -11.878 -15.873 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.042 3.958 3 H 0.089 0.911 4 C -0.176 4.176 5 C 0.070 3.930 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.581 5.581 12 Si 0.710 3.290 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.190 4.190 17 C -0.012 4.012 18 N -0.332 5.332 19 C 0.306 3.694 20 O -0.414 6.414 21 C -0.147 4.147 22 C -0.133 4.133 23 C 0.122 3.878 24 F -0.106 7.106 25 C -0.183 4.183 26 C -0.082 4.082 27 C -0.183 4.183 28 C 0.122 3.878 29 F -0.106 7.106 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.263 -11.796 -15.630 26.104 hybrid contribution -0.134 1.227 -0.336 1.279 sum -17.397 -10.569 -15.966 25.870 Atomic orbital electron populations 1.22201 0.92926 1.03493 1.00391 1.21269 0.95142 0.95437 0.83995 0.91108 1.22290 0.97352 1.00711 0.97202 1.20156 0.90178 0.87100 0.95585 0.92136 1.42882 1.14308 1.05254 1.76600 1.19066 0.88187 0.95917 1.34077 0.89122 1.24648 0.96045 0.97087 1.01159 1.69693 1.13473 1.22019 1.52885 0.86642 0.79648 0.83600 0.79104 1.21028 1.21704 1.20491 1.22414 1.01953 0.98077 0.96591 1.21695 0.79094 1.01668 0.98707 1.48154 1.07895 1.57046 1.20071 1.20189 0.86536 0.78395 0.84234 1.90744 1.15437 1.55893 1.79336 1.20630 0.96424 1.03733 0.93931 1.19332 1.00891 0.93447 0.99638 1.17152 0.94542 0.86378 0.89718 1.91527 1.87298 1.65933 1.65885 1.21167 0.97333 1.02032 0.97810 1.20818 0.98704 0.91836 0.96872 1.21173 0.96967 0.98747 1.01447 1.17171 0.93806 0.80318 0.96486 1.91537 1.83823 1.40044 1.95205 0.91158 0.94055 0.91453 0.90592 0.91530 0.80618 0.93037 0.90140 0.92853 0.90886 0.90092 0.87185 0.87194 0.84022 0.83964 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.59 37.16 0.28 -1.77 16 2 C 0.14 2.33 3.19 -67.60 -0.22 2.12 16 3 H 0.07 1.26 6.65 -51.93 -0.35 0.92 16 4 C -0.14 -2.15 5.07 -26.61 -0.13 -2.28 16 5 C 0.18 3.24 3.10 -67.90 -0.21 3.03 16 6 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 7 N -0.75 -16.55 4.12 -53.39 -0.22 -16.77 16 8 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 12 Si 0.88 21.73 27.73 -169.99 -4.71 17.02 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 16 C -0.15 -2.36 5.76 -26.83 -0.15 -2.51 16 17 C 0.11 1.65 6.05 -3.93 -0.02 1.63 16 18 N -0.60 -9.25 2.98 -165.48 -0.49 -9.74 16 19 C 0.52 7.86 7.60 -10.99 -0.08 7.78 16 20 O -0.54 -9.22 11.43 5.55 0.06 -9.15 16 21 C -0.11 -1.30 3.89 -29.04 -0.11 -1.41 16 22 C -0.13 -1.56 4.38 -104.49 -0.46 -2.02 16 23 C 0.14 1.57 7.24 -39.43 -0.29 1.28 16 24 F -0.13 -1.53 16.47 2.25 0.04 -1.50 16 25 C -0.16 -1.38 10.03 -39.50 -0.40 -1.78 16 26 C -0.06 -0.46 10.04 -39.60 -0.40 -0.85 16 27 C -0.16 -1.41 10.02 -39.51 -0.40 -1.81 16 28 C 0.14 1.61 7.24 -39.43 -0.29 1.33 16 29 F -0.13 -1.62 16.48 2.25 0.04 -1.58 16 30 H 0.07 1.14 6.73 -51.93 -0.35 0.79 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.12 6.77 -51.93 -0.35 0.77 16 33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.36 8.03 3.93 -40.82 -0.16 7.87 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.87 5.96 -51.93 -0.31 0.56 16 40 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 41 H 0.11 1.16 6.96 -51.93 -0.36 0.80 16 42 H 0.11 1.22 7.62 -51.93 -0.40 0.82 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -31.92 362.71 -8.24 -40.16 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.07 Total: 7.80 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.13 Total: -3.84 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.06 Total: -54.38 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.92 -8.24 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.348 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds