Wall clock time and date at job start Tue Mar 31 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.58405 * 2 1 4 4 C 1.53194 * 109.58880 * 120.42687 * 2 1 3 5 5 C 1.53034 * 109.31439 * 174.42622 * 4 2 1 6 6 H 1.09002 * 109.46040 * 178.62957 * 5 4 2 7 7 N 1.46494 * 109.46361 * 58.65711 * 5 4 2 8 8 C 1.36940 * 120.00342 * 155.00306 * 7 5 4 9 9 H 1.07997 * 119.99824 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99993 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00143 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00012 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47200 * 90.00520 * 12 10 8 14 14 H 1.48502 * 109.47211 * 209.99846 * 12 10 8 15 15 H 1.48493 * 109.47381 * 330.00231 * 12 10 8 16 16 C 1.53039 * 109.53799 * 298.63150 * 5 4 2 17 17 C 1.52761 * 109.38094 * 61.24191 * 16 5 4 18 18 N 1.46919 * 109.58915 * 239.71275 * 2 1 3 19 19 C 1.34774 * 120.63093 * 6.58763 * 18 2 1 20 20 O 1.21287 * 119.99732 * 354.93584 * 19 18 2 21 21 C 1.50701 * 120.00296 * 174.94578 * 19 18 2 22 22 C 1.50697 * 109.47219 * 179.97438 * 21 19 18 23 23 C 1.38421 * 120.02389 * 269.72557 * 22 21 19 24 24 F 1.35096 * 120.01399 * 359.97143 * 23 22 21 25 25 C 1.38479 * 119.97373 * 179.70462 * 23 22 21 26 26 C 1.38208 * 120.02404 * 0.58598 * 25 23 22 27 27 C 1.38208 * 120.05005 * 359.68993 * 26 25 23 28 28 C 1.38420 * 120.02852 * 89.99669 * 22 21 19 29 29 F 1.35100 * 120.01159 * 359.97438 * 28 22 21 30 30 H 1.09003 * 109.47091 * 175.96107 * 1 2 3 31 31 H 1.08994 * 109.47215 * 295.95440 * 1 2 3 32 32 H 1.08998 * 109.46944 * 55.95942 * 1 2 3 33 33 H 1.09008 * 109.49864 * 294.37906 * 4 2 1 34 34 H 1.09001 * 109.49764 * 54.46636 * 4 2 1 35 35 H 0.97004 * 119.99637 * 334.99682 * 7 5 4 36 36 H 0.96999 * 120.00005 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.50016 * 181.31983 * 16 5 4 38 38 H 1.09006 * 109.49567 * 301.38271 * 16 5 4 39 39 H 1.09002 * 109.50891 * 185.71067 * 17 16 5 40 40 H 1.08990 * 109.43092 * 65.42521 * 17 16 5 41 41 H 1.08997 * 109.47554 * 59.99576 * 21 19 18 42 42 H 1.08999 * 109.46785 * 299.99237 * 21 19 18 43 43 H 1.08000 * 119.98762 * 180.32336 * 25 23 22 44 44 H 1.08002 * 119.97323 * 179.70610 * 26 25 23 45 45 H 1.08000 * 119.98395 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1691 6 1 3.9378 -1.3475 2.0651 7 7 4.1570 0.4885 1.0757 8 6 5.4414 0.7020 1.5000 9 1 6.0196 -0.1159 1.9039 10 6 6.0001 1.9695 1.4109 11 7 7.2344 2.1749 1.8192 12 14 5.0002 3.3840 0.7116 13 1 4.2611 4.0580 1.8093 14 1 5.9105 4.3577 0.0571 15 1 4.0340 2.8609 -0.2873 16 6 3.9570 -1.6655 -0.0655 17 6 3.4645 -0.9502 -1.3222 18 7 2.0226 -0.6981 -1.1952 19 6 1.1674 -1.1043 -2.1545 20 8 -0.0281 -0.9773 -1.9944 21 6 1.6967 -1.7164 -3.4258 22 6 0.5440 -2.0822 -4.3250 23 6 -0.0298 -3.3390 -4.2389 24 9 0.4437 -4.2385 -3.3490 25 6 -1.0929 -3.6720 -5.0614 26 6 -1.5732 -2.7542 -5.9764 27 6 -0.9974 -1.5011 -6.0672 28 6 0.0618 -1.1638 -5.2415 29 9 0.6241 0.0614 -5.3301 30 1 -0.3633 -1.0251 -0.0724 31 1 -0.3633 0.4497 0.9240 32 1 -0.3633 0.5753 -0.8516 33 1 1.7660 -0.1695 2.1367 34 1 1.6030 -1.7269 1.2892 35 1 3.6375 1.2231 0.7132 36 1 7.6247 3.0607 1.7573 37 1 5.0412 -1.7694 -0.1058 38 1 3.4988 -2.6530 -0.0081 39 1 3.6504 -1.5770 -2.1943 40 1 3.9929 -0.0031 -1.4309 41 1 2.2692 -2.6126 -3.1868 42 1 2.3406 -0.9986 -3.9340 43 1 -1.5442 -4.6506 -4.9907 44 1 -2.3993 -3.0165 -6.6207 45 1 -1.3738 -0.7847 -6.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:32 Heat of formation + Delta-G solvation = -87.424877 kcal Electronic energy + Delta-G solvation = -30444.470016 eV Core-core repulsion = 26098.107598 eV Total energy + Delta-G solvation = -4346.362417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.06728 -50.04303 -41.73454 -39.85526 -38.85948 -35.98466 -34.81741 -33.85359 -33.19735 -31.48465 -31.25949 -29.06560 -28.16693 -25.73144 -24.99925 -23.89032 -23.87394 -22.71621 -21.29524 -19.81944 -19.69767 -19.14141 -18.42535 -17.97934 -17.36032 -16.91298 -16.83052 -16.60744 -16.60485 -16.36162 -16.32405 -15.80666 -15.46423 -15.29245 -15.14768 -14.83334 -14.66940 -14.36360 -14.30169 -13.93551 -13.75563 -13.45530 -13.29100 -13.11145 -13.00808 -12.93020 -12.76702 -12.58148 -12.54636 -12.32654 -12.13784 -12.03749 -11.94272 -11.73201 -11.45014 -10.97154 -10.26714 -9.83307 -9.74337 -9.60344 -9.27644 -8.01089 -5.32878 -0.04422 -0.01118 1.35274 1.36893 1.43608 1.53876 1.90902 2.41008 2.46892 2.88973 3.30589 3.32510 3.41338 3.50403 3.57562 3.63172 3.86927 3.90125 3.91716 3.99913 4.20140 4.23151 4.27936 4.34577 4.35463 4.41763 4.57364 4.68010 4.77793 4.83926 4.84549 4.87482 5.00187 5.03214 5.05338 5.06646 5.18697 5.20023 5.20664 5.26654 5.36840 5.66512 5.78481 5.81247 6.23187 6.40576 7.09304 7.11157 7.85850 8.04012 9.20701 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.003254 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.673600 B = 8603.295113 C = 9055.995403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.141 3.859 3 H 0.054 0.946 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.052 0.948 7 N -0.747 5.747 8 C -0.217 4.217 9 H 0.063 0.937 10 C -0.060 4.060 11 N -0.983 5.983 12 Si 0.942 3.058 13 H -0.282 1.282 14 H -0.298 1.298 15 H -0.259 1.259 16 C -0.142 4.142 17 C 0.114 3.886 18 N -0.601 5.601 19 C 0.516 3.484 20 O -0.557 6.557 21 C -0.104 4.104 22 C -0.151 4.151 23 C 0.119 3.881 24 F -0.139 7.139 25 C -0.160 4.160 26 C -0.052 4.052 27 C -0.161 4.161 28 C 0.114 3.886 29 F -0.143 7.143 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.167 0.833 44 H 0.184 0.816 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.754 -13.187 -17.850 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.038 3.962 3 H 0.072 0.928 4 C -0.164 4.164 5 C 0.063 3.937 6 H 0.070 0.930 7 N -0.391 5.391 8 C -0.348 4.348 9 H 0.081 0.919 10 C -0.251 4.251 11 N -0.635 5.635 12 Si 0.771 3.229 13 H -0.208 1.208 14 H -0.225 1.225 15 H -0.184 1.184 16 C -0.182 4.182 17 C -0.008 4.008 18 N -0.334 5.334 19 C 0.305 3.695 20 O -0.437 6.437 21 C -0.143 4.143 22 C -0.153 4.153 23 C 0.099 3.901 24 F -0.117 7.117 25 C -0.178 4.178 26 C -0.069 4.069 27 C -0.180 4.180 28 C 0.095 3.905 29 F -0.121 7.121 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.184 0.816 44 H 0.201 0.799 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.129 -13.151 -17.625 29.812 hybrid contribution 0.662 1.496 0.262 1.656 sum -19.467 -11.655 -17.363 28.570 Atomic orbital electron populations 1.22024 0.92176 1.02871 1.00478 1.21236 0.95623 0.94726 0.84603 0.92847 1.22176 0.95229 1.01772 0.97180 1.20400 0.91685 0.85245 0.96372 0.92999 1.42872 1.12738 1.07182 1.76315 1.19025 0.89444 0.94755 1.31553 0.91919 1.25331 0.97105 0.99834 1.02853 1.69857 1.15576 1.22387 1.55647 0.85606 0.78314 0.80233 0.78725 1.20818 1.22493 1.18394 1.22274 1.01303 0.98951 0.95682 1.21661 0.78628 1.00943 0.99562 1.48191 1.08025 1.57086 1.20094 1.20690 0.86225 0.77835 0.84761 1.90728 1.16408 1.56689 1.79854 1.20616 0.97018 1.04189 0.92514 1.19393 1.01437 0.94218 1.00259 1.17455 0.95779 0.86212 0.90614 1.91493 1.87624 1.66168 1.66442 1.21566 0.96058 1.03372 0.96827 1.21313 0.98809 0.90563 0.96253 1.21551 0.95715 0.99879 1.00844 1.17531 0.95205 0.79973 0.97838 1.91493 1.84289 1.40942 1.95422 0.91812 0.92602 0.92916 0.90338 0.89708 0.80431 0.93515 0.91503 0.90318 0.87641 0.92529 0.85745 0.86542 0.81567 0.79908 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.59 71.98 0.55 -2.94 16 2 C 0.14 4.38 3.19 44.98 0.14 4.53 16 3 H 0.05 1.85 6.65 -2.38 -0.02 1.83 16 4 C -0.12 -3.71 5.07 30.67 0.16 -3.56 16 5 C 0.17 6.01 3.10 45.02 0.14 6.15 16 6 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 7 N -0.75 -32.86 4.12 -322.84 -1.33 -34.19 16 8 C -0.22 -11.78 10.41 84.03 0.87 -10.90 16 9 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 10 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 11 N -0.98 -62.16 13.97 21.65 0.30 -61.85 16 12 Si 0.94 45.45 27.73 68.60 1.90 47.35 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 15 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 16 C -0.14 -4.27 5.76 30.53 0.18 -4.10 16 17 C 0.11 3.25 6.05 86.22 0.52 3.77 16 18 N -0.60 -17.74 2.98 -795.86 -2.37 -20.11 16 19 C 0.52 15.00 7.60 87.66 0.67 15.67 16 20 O -0.56 -18.67 11.43 -3.05 -0.03 -18.70 16 21 C -0.10 -2.39 3.89 29.10 0.11 -2.27 16 22 C -0.15 -3.40 4.38 -19.78 -0.09 -3.49 16 23 C 0.12 2.42 7.24 22.37 0.16 2.59 16 24 F -0.14 -3.13 16.47 44.97 0.74 -2.38 16 25 C -0.16 -2.18 10.03 22.32 0.22 -1.96 16 26 C -0.05 -0.53 10.04 22.26 0.22 -0.31 16 27 C -0.16 -2.33 10.02 22.32 0.22 -2.11 16 28 C 0.11 2.45 7.24 22.37 0.16 2.61 16 29 F -0.14 -3.55 16.48 44.97 0.74 -2.81 16 30 H 0.06 1.97 6.73 -2.39 -0.02 1.95 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.71 6.77 -2.39 -0.02 1.69 16 33 H 0.08 2.30 8.14 -2.38 -0.02 2.29 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.36 15.81 3.93 -92.71 -0.36 15.45 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.11 2.30 5.96 -2.39 -0.01 2.29 16 40 H 0.06 1.91 7.74 -2.39 -0.02 1.89 16 41 H 0.12 2.41 6.96 -2.39 -0.02 2.39 16 42 H 0.12 2.47 7.62 -2.39 -0.02 2.45 16 43 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 45 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -71.05 362.71 5.27 -65.78 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.60 Total: 26.23 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.71 Total: 0.69 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.40 Total: -116.16 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.03 Total: -18.70 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.48 Total: -5.19 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -71.05 5.27 -65.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.645 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds