Wall clock time and date at job start Tue Mar 31 2020 21:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.70421 * 2 1 4 4 C 1.53188 * 109.58654 * 120.35912 * 2 1 3 5 5 C 1.53037 * 109.31235 * 174.42111 * 4 2 1 6 6 H 1.09003 * 109.45462 * 58.64785 * 5 4 2 7 7 N 1.46501 * 109.46283 * 178.61660 * 5 4 2 8 8 C 1.36940 * 120.00237 * 205.07246 * 7 5 4 9 9 H 1.07999 * 119.99795 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00025 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99963 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 120.00031 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47072 * 90.00060 * 12 10 8 14 14 H 1.48497 * 109.47180 * 330.00210 * 12 10 8 15 15 H 1.48503 * 109.46945 * 210.00097 * 12 10 8 16 16 C 1.53042 * 109.53994 * 298.63196 * 5 4 2 17 17 C 1.53199 * 109.31202 * 61.36616 * 16 5 4 18 18 N 1.46926 * 109.58460 * 239.64735 * 2 1 3 19 19 C 1.34778 * 120.63374 * 6.62732 * 18 2 1 20 20 O 1.21282 * 119.99854 * 354.92568 * 19 18 2 21 21 C 1.50700 * 120.00283 * 174.92656 * 19 18 2 22 22 C 1.50704 * 109.47305 * 179.97438 * 21 19 18 23 23 C 1.38420 * 120.02509 * 269.72929 * 22 21 19 24 24 F 1.35100 * 120.00901 * 359.97398 * 23 22 21 25 25 C 1.38471 * 119.97210 * 179.69723 * 23 22 21 26 26 C 1.38210 * 120.02518 * 0.59770 * 25 23 22 27 27 C 1.38200 * 120.04975 * 359.67419 * 26 25 23 28 28 C 1.38413 * 120.02457 * 89.99910 * 22 21 19 29 29 F 1.35105 * 120.01287 * 359.97438 * 28 22 21 30 30 H 1.09000 * 109.46829 * 175.99071 * 1 2 3 31 31 H 1.08997 * 109.46953 * 295.99215 * 1 2 3 32 32 H 1.09002 * 109.46681 * 55.98940 * 1 2 3 33 33 H 1.08997 * 109.49642 * 54.47078 * 4 2 1 34 34 H 1.08995 * 109.49736 * 294.37343 * 4 2 1 35 35 H 0.97002 * 119.99886 * 25.06590 * 7 5 4 36 36 H 0.97003 * 119.99849 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.50351 * 181.31418 * 16 5 4 38 38 H 1.08998 * 109.50375 * 301.38356 * 16 5 4 39 39 H 1.09004 * 109.58456 * 65.14882 * 17 16 5 40 40 H 1.08994 * 109.58623 * 185.43477 * 17 16 5 41 41 H 1.08999 * 109.47304 * 300.00284 * 21 19 18 42 42 H 1.09003 * 109.47061 * 59.99925 * 21 19 18 43 43 H 1.08005 * 119.98578 * 180.31957 * 25 23 22 44 44 H 1.07997 * 119.97378 * 179.69960 * 26 25 23 45 45 H 1.08002 * 119.98811 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 4.0060 0.1473 1.0991 7 7 4.0653 -1.5159 2.3752 8 6 5.3493 -1.2978 2.7981 9 1 5.9952 -0.6338 2.2429 10 6 5.8208 -1.9303 3.9403 11 7 7.0551 -1.7210 4.3464 12 14 4.7033 -3.0784 4.9009 13 1 4.8460 -4.4606 4.3775 14 1 3.2936 -2.6359 4.7524 15 1 5.0821 -3.0511 6.3366 16 6 3.9569 -1.6658 -0.0636 17 6 3.4651 -0.9470 -1.3239 18 7 2.0225 -0.6995 -1.1945 19 6 1.1674 -1.1061 -2.1537 20 8 -0.0280 -0.9785 -1.9941 21 6 1.6967 -1.7193 -3.4245 22 6 0.5441 -2.0854 -4.3237 23 6 -0.0302 -3.3418 -4.2368 24 9 0.4427 -4.2408 -3.3460 25 6 -1.0933 -3.6749 -5.0591 26 6 -1.5730 -2.7577 -5.9750 27 6 -0.9967 -1.5049 -6.0666 28 6 0.0625 -1.1674 -5.2409 29 9 0.6253 0.0575 -5.3303 30 1 -0.3633 -1.0252 -0.0719 31 1 -0.3633 0.4504 0.9237 32 1 -0.3633 0.5748 -0.8519 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1670 2.1367 35 1 3.4852 -2.1126 2.8737 36 1 7.3844 -2.1627 5.1448 37 1 5.0412 -1.7697 -0.1039 38 1 3.4988 -2.6531 -0.0052 39 1 3.9903 0.0021 -1.4317 40 1 3.6541 -1.5706 -2.1975 41 1 2.3412 -1.0022 -3.9330 42 1 2.2688 -2.6155 -3.1846 43 1 -1.5449 -4.6534 -4.9879 44 1 -2.3990 -3.0200 -6.6194 45 1 -1.3726 -0.7888 -6.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:35 Heat of formation + Delta-G solvation = -72.195706 kcal Electronic energy + Delta-G solvation = -29902.752003 eV Core-core repulsion = 25557.049972 eV Total energy + Delta-G solvation = -4345.702031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.28774 -49.25428 -40.57536 -39.09207 -37.47319 -34.66690 -33.86387 -32.24159 -31.96694 -30.62057 -29.87688 -28.04346 -27.00151 -24.37014 -23.20275 -23.02656 -22.71001 -21.42737 -20.21158 -19.07179 -18.42232 -17.69819 -17.58612 -16.97322 -16.47191 -16.03314 -15.88382 -15.75422 -15.53042 -15.33627 -14.84223 -14.70146 -14.21537 -14.11715 -13.83872 -13.48861 -13.40826 -13.26007 -13.08464 -12.65842 -12.44161 -12.32519 -12.27564 -12.19246 -11.92665 -11.85057 -11.65360 -11.43623 -11.03790 -10.95221 -10.85256 -10.53910 -10.29604 -9.92736 -9.62247 -9.36445 -9.07218 -8.96464 -8.93018 -8.47505 -7.31343 -5.80341 -3.16181 0.61790 0.65100 2.60277 2.85933 3.14935 3.35995 3.39656 3.44029 3.57783 4.06260 4.07845 4.29859 4.43543 4.51034 4.56639 4.78576 4.95522 4.97956 5.06173 5.11541 5.17925 5.26433 5.39728 5.44742 5.51324 5.54295 5.55003 5.58632 5.68547 5.73909 5.79145 5.81129 5.91462 6.02265 6.05278 6.25734 6.33821 6.36701 6.40471 6.44224 6.67171 6.79990 6.93179 7.46397 7.95143 8.19374 8.38803 9.16976 9.89917 10.09731 11.37836 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002727 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.998128 B =10265.347930 C =10588.771012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.285 1.285 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.520 3.480 20 O -0.532 6.532 21 C -0.107 4.107 22 C -0.132 4.132 23 C 0.142 3.858 24 F -0.127 7.127 25 C -0.164 4.164 26 C -0.063 4.063 27 C -0.165 4.165 28 C 0.141 3.859 29 F -0.129 7.129 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 -0.397 -23.413 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.203 1.203 15 H -0.217 1.217 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.335 5.335 19 C 0.307 3.693 20 O -0.410 6.410 21 C -0.147 4.147 22 C -0.135 4.135 23 C 0.123 3.877 24 F -0.105 7.105 25 C -0.183 4.183 26 C -0.082 4.082 27 C -0.184 4.184 28 C 0.122 3.878 29 F -0.107 7.107 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.875 -0.218 -23.219 28.704 hybrid contribution -0.246 -0.900 0.999 1.367 sum -17.120 -1.119 -22.220 28.073 Atomic orbital electron populations 1.22190 0.92800 1.03646 1.00406 1.21303 0.95443 0.95078 0.83656 0.90918 1.22340 0.97500 1.00989 0.96947 1.20132 0.90772 0.95333 0.86354 0.92545 1.42796 1.13127 1.55030 1.28025 1.19060 0.87485 1.23411 1.07440 0.89168 1.24670 0.96095 1.00116 0.98185 1.69698 1.15100 1.47139 1.26154 0.86562 0.80559 0.81565 0.79913 1.21123 1.20311 1.21746 1.22644 1.02205 0.99804 0.94604 1.21895 0.79388 1.00837 0.99638 1.48184 1.07696 1.57473 1.20194 1.20209 0.86553 0.78276 0.84223 1.90756 1.15444 1.55537 1.79274 1.20633 0.96474 1.03757 0.93853 1.19315 1.00953 0.93484 0.99716 1.17174 0.94494 0.86416 0.89648 1.91544 1.87275 1.65951 1.65767 1.21188 0.97291 1.02084 0.97735 1.20826 0.98683 0.91831 0.96820 1.21167 0.96981 0.98745 1.01462 1.17144 0.93847 0.80275 0.96541 1.91525 1.83833 1.40113 1.95233 0.91164 0.93941 0.91398 0.91895 0.90562 0.80637 0.93040 0.90019 0.92216 0.91067 0.90374 0.87190 0.87119 0.83980 0.83936 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.59 37.16 0.28 -1.61 16 2 C 0.15 2.09 3.49 -67.60 -0.24 1.85 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.35 2.73 -67.89 -0.19 3.17 16 6 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 7 N -0.75 -17.21 4.92 -53.38 -0.26 -17.47 16 8 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 9 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 12 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 17 C 0.11 1.29 6.32 -3.71 -0.02 1.27 16 18 N -0.60 -8.10 2.97 -165.21 -0.49 -8.59 16 19 C 0.52 7.15 7.60 -10.98 -0.08 7.07 16 20 O -0.53 -8.59 11.44 5.56 0.06 -8.53 16 21 C -0.11 -1.17 3.88 -29.03 -0.11 -1.28 16 22 C -0.13 -1.46 4.39 -104.49 -0.46 -1.92 16 23 C 0.14 1.53 7.24 -39.43 -0.29 1.24 16 24 F -0.13 -1.54 16.47 2.25 0.04 -1.50 16 25 C -0.16 -1.33 10.02 -39.51 -0.40 -1.73 16 26 C -0.06 -0.42 10.04 -39.61 -0.40 -0.82 16 27 C -0.16 -1.28 10.02 -39.51 -0.40 -1.68 16 28 C 0.14 1.46 7.24 -39.43 -0.29 1.17 16 29 F -0.13 -1.43 16.48 2.25 0.04 -1.39 16 30 H 0.07 1.11 6.73 -51.93 -0.35 0.76 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.01 6.77 -51.93 -0.35 0.66 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 41 H 0.11 1.00 7.61 -51.93 -0.40 0.61 16 42 H 0.11 1.09 6.97 -51.93 -0.36 0.73 16 43 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -32.82 367.03 -8.37 -41.19 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.24 Total: 6.56 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.11 Total: -4.93 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.02 Total: -54.25 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.53 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.07 Total: -2.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.82 -8.37 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.002 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds