Wall clock time and date at job start Tue Mar 31 2020 21:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.70421 * 2 1 4 4 C 1.53188 * 109.58654 * 120.35912 * 2 1 3 5 5 C 1.53037 * 109.31235 * 174.42111 * 4 2 1 6 6 H 1.09003 * 109.45462 * 58.64785 * 5 4 2 7 7 N 1.46501 * 109.46283 * 178.61660 * 5 4 2 8 8 C 1.36940 * 120.00237 * 205.07246 * 7 5 4 9 9 H 1.07999 * 119.99795 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00025 * 179.97438 * 8 7 5 11 11 N 1.31616 * 119.99963 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 120.00031 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47072 * 90.00060 * 12 10 8 14 14 H 1.48497 * 109.47180 * 330.00210 * 12 10 8 15 15 H 1.48503 * 109.46945 * 210.00097 * 12 10 8 16 16 C 1.53042 * 109.53994 * 298.63196 * 5 4 2 17 17 C 1.53199 * 109.31202 * 61.36616 * 16 5 4 18 18 N 1.46926 * 109.58460 * 239.64735 * 2 1 3 19 19 C 1.34778 * 120.63374 * 6.62732 * 18 2 1 20 20 O 1.21282 * 119.99854 * 354.92568 * 19 18 2 21 21 C 1.50700 * 120.00283 * 174.92656 * 19 18 2 22 22 C 1.50704 * 109.47305 * 179.97438 * 21 19 18 23 23 C 1.38420 * 120.02509 * 269.72929 * 22 21 19 24 24 F 1.35100 * 120.00901 * 359.97398 * 23 22 21 25 25 C 1.38471 * 119.97210 * 179.69723 * 23 22 21 26 26 C 1.38210 * 120.02518 * 0.59770 * 25 23 22 27 27 C 1.38200 * 120.04975 * 359.67419 * 26 25 23 28 28 C 1.38413 * 120.02457 * 89.99910 * 22 21 19 29 29 F 1.35105 * 120.01287 * 359.97438 * 28 22 21 30 30 H 1.09000 * 109.46829 * 175.99071 * 1 2 3 31 31 H 1.08997 * 109.46953 * 295.99215 * 1 2 3 32 32 H 1.09002 * 109.46681 * 55.98940 * 1 2 3 33 33 H 1.08997 * 109.49642 * 54.47078 * 4 2 1 34 34 H 1.08995 * 109.49736 * 294.37343 * 4 2 1 35 35 H 0.97002 * 119.99886 * 25.06590 * 7 5 4 36 36 H 0.97003 * 119.99849 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.50351 * 181.31418 * 16 5 4 38 38 H 1.08998 * 109.50375 * 301.38356 * 16 5 4 39 39 H 1.09004 * 109.58456 * 65.14882 * 17 16 5 40 40 H 1.08994 * 109.58623 * 185.43477 * 17 16 5 41 41 H 1.08999 * 109.47304 * 300.00284 * 21 19 18 42 42 H 1.09003 * 109.47061 * 59.99925 * 21 19 18 43 43 H 1.08005 * 119.98578 * 180.31957 * 25 23 22 44 44 H 1.07997 * 119.97378 * 179.69960 * 26 25 23 45 45 H 1.08002 * 119.98811 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 4.0060 0.1473 1.0991 7 7 4.0653 -1.5159 2.3752 8 6 5.3493 -1.2978 2.7981 9 1 5.9952 -0.6338 2.2429 10 6 5.8208 -1.9303 3.9403 11 7 7.0551 -1.7210 4.3464 12 14 4.7033 -3.0784 4.9009 13 1 4.8460 -4.4606 4.3775 14 1 3.2936 -2.6359 4.7524 15 1 5.0821 -3.0511 6.3366 16 6 3.9569 -1.6658 -0.0636 17 6 3.4651 -0.9470 -1.3239 18 7 2.0225 -0.6995 -1.1945 19 6 1.1674 -1.1061 -2.1537 20 8 -0.0280 -0.9785 -1.9941 21 6 1.6967 -1.7193 -3.4245 22 6 0.5441 -2.0854 -4.3237 23 6 -0.0302 -3.3418 -4.2368 24 9 0.4427 -4.2408 -3.3460 25 6 -1.0933 -3.6749 -5.0591 26 6 -1.5730 -2.7577 -5.9750 27 6 -0.9967 -1.5049 -6.0666 28 6 0.0625 -1.1674 -5.2409 29 9 0.6253 0.0575 -5.3303 30 1 -0.3633 -1.0252 -0.0719 31 1 -0.3633 0.4504 0.9237 32 1 -0.3633 0.5748 -0.8519 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1670 2.1367 35 1 3.4852 -2.1126 2.8737 36 1 7.3844 -2.1627 5.1448 37 1 5.0412 -1.7697 -0.1039 38 1 3.4988 -2.6531 -0.0052 39 1 3.9903 0.0021 -1.4317 40 1 3.6541 -1.5706 -2.1975 41 1 2.3412 -1.0022 -3.9330 42 1 2.2688 -2.6155 -3.1846 43 1 -1.5449 -4.6534 -4.9879 44 1 -2.3990 -3.0200 -6.6194 45 1 -1.3726 -0.7888 -6.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:35 Heat of formation + Delta-G solvation = -91.259596 kcal Electronic energy + Delta-G solvation = -29903.578676 eV Core-core repulsion = 25557.049972 eV Total energy + Delta-G solvation = -4346.528703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.05715 -50.03841 -41.66460 -39.81151 -38.73615 -36.29701 -34.80223 -33.87765 -33.18307 -31.55843 -31.25406 -29.01278 -28.14687 -25.94251 -24.29632 -23.90035 -23.87046 -22.48859 -21.67977 -20.27671 -19.51261 -19.14021 -18.41432 -17.99016 -17.33850 -16.89506 -16.72811 -16.67863 -16.59044 -16.40148 -16.31765 -15.91411 -15.45582 -15.23546 -15.06141 -14.76991 -14.54368 -14.39275 -14.30586 -13.84095 -13.75282 -13.49084 -13.28504 -13.15983 -13.01057 -12.92425 -12.78542 -12.62771 -12.53801 -12.31293 -12.11262 -12.05879 -11.98259 -11.79835 -11.39728 -10.95201 -10.26717 -9.82477 -9.73951 -9.61937 -9.32208 -8.02280 -5.35181 -0.03801 -0.00680 1.37369 1.38842 1.46265 1.55620 1.91748 2.41462 2.47650 2.89439 3.29018 3.33678 3.41826 3.44296 3.54312 3.64366 3.85437 3.89591 3.97885 4.05376 4.21246 4.23300 4.30158 4.35194 4.37103 4.52895 4.56740 4.59851 4.72338 4.80647 4.84497 4.85256 4.96934 5.02413 5.03740 5.06010 5.11719 5.21253 5.22010 5.37853 5.45729 5.67043 5.77846 5.78906 6.21934 6.39676 7.07505 7.13160 7.84132 8.02391 9.19053 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002727 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.998128 B =10265.347930 C =10588.771012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.150 3.850 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.177 3.823 6 H 0.050 0.950 7 N -0.753 5.753 8 C -0.223 4.223 9 H 0.062 0.938 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.282 1.282 14 H -0.255 1.255 15 H -0.297 1.297 16 C -0.143 4.143 17 C 0.113 3.887 18 N -0.604 5.604 19 C 0.516 3.484 20 O -0.558 6.558 21 C -0.104 4.104 22 C -0.151 4.151 23 C 0.114 3.886 24 F -0.142 7.142 25 C -0.163 4.163 26 C -0.052 4.052 27 C -0.160 4.160 28 C 0.119 3.881 29 F -0.139 7.139 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.163 0.837 44 H 0.182 0.818 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 -0.797 -25.535 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.047 3.953 3 H 0.103 0.897 4 C -0.166 4.166 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.395 5.395 8 C -0.354 4.354 9 H 0.080 0.920 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.208 1.208 14 H -0.180 1.180 15 H -0.224 1.224 16 C -0.184 4.184 17 C -0.010 4.010 18 N -0.337 5.337 19 C 0.305 3.695 20 O -0.438 6.438 21 C -0.144 4.144 22 C -0.153 4.153 23 C 0.095 3.905 24 F -0.121 7.121 25 C -0.181 4.181 26 C -0.070 4.070 27 C -0.179 4.179 28 C 0.100 3.900 29 F -0.117 7.117 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.180 0.820 44 H 0.200 0.800 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.350 -0.607 -25.394 31.932 hybrid contribution 0.459 -0.719 1.532 1.754 sum -18.891 -1.326 -23.862 30.463 Atomic orbital electron populations 1.22017 0.92634 1.02377 1.00702 1.21267 0.95436 0.95467 0.83163 0.89723 1.22200 0.95353 1.00943 0.98112 1.20382 0.92324 0.94899 0.85518 0.93167 1.42848 1.11577 1.55456 1.29637 1.19027 0.88701 1.21324 1.06350 0.91956 1.25428 0.97589 1.02632 0.99819 1.69867 1.17312 1.49202 1.27003 0.85483 0.79643 0.79350 0.77732 1.20794 1.18006 1.22429 1.22440 1.01227 0.99453 0.95240 1.21911 0.78710 1.01718 0.98669 1.48238 1.08100 1.57350 1.20033 1.20701 0.86231 0.77688 0.84897 1.90741 1.16607 1.56491 1.79935 1.20637 0.96961 1.04216 0.92541 1.19405 1.01524 0.94032 1.00369 1.17527 0.95913 0.86476 0.90608 1.91498 1.87677 1.66401 1.66512 1.21554 0.96190 1.03354 0.97027 1.21301 0.98832 0.90704 0.96171 1.21560 0.95739 0.99718 1.00884 1.17440 0.95021 0.80009 0.97562 1.91494 1.84175 1.40649 1.95384 0.93033 0.92698 0.92104 0.92541 0.90500 0.80491 0.93447 0.91543 0.92858 0.89599 0.87451 0.85518 0.86306 0.81974 0.80024 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 7.59 71.98 0.55 -2.73 16 2 C 0.15 4.01 3.49 44.97 0.16 4.17 16 3 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.13 -3.89 4.84 30.67 0.15 -3.74 16 5 C 0.18 6.33 2.73 45.02 0.12 6.45 16 6 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 7 N -0.75 -34.33 4.92 -322.81 -1.59 -35.92 16 8 C -0.22 -12.39 10.41 84.03 0.87 -11.51 16 9 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 10 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 11 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 12 Si 0.95 45.76 27.74 68.60 1.90 47.66 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 H -0.26 -11.22 6.52 99.48 0.65 -10.58 16 15 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 16 C -0.14 -4.41 5.66 30.67 0.17 -4.24 16 17 C 0.11 2.55 6.32 86.36 0.55 3.09 16 18 N -0.60 -15.35 2.97 -795.01 -2.36 -17.72 16 19 C 0.52 13.61 7.60 87.66 0.67 14.28 16 20 O -0.56 -17.70 11.44 -3.04 -0.03 -17.73 16 21 C -0.10 -2.13 3.88 29.10 0.11 -2.01 16 22 C -0.15 -3.18 4.39 -19.78 -0.09 -3.27 16 23 C 0.11 2.33 7.24 22.37 0.16 2.50 16 24 F -0.14 -3.39 16.47 44.97 0.74 -2.65 16 25 C -0.16 -2.25 10.02 22.32 0.22 -2.03 16 26 C -0.05 -0.51 10.04 22.25 0.22 -0.29 16 27 C -0.16 -2.06 10.02 22.32 0.22 -1.83 16 28 C 0.12 2.28 7.24 22.37 0.16 2.44 16 29 F -0.14 -2.91 16.48 44.97 0.74 -2.17 16 30 H 0.05 1.60 6.73 -2.39 -0.02 1.59 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.76 6.77 -2.39 -0.02 1.74 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.36 16.27 5.66 -92.71 -0.52 15.75 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.11 1.85 5.97 -2.39 -0.01 1.84 16 41 H 0.13 2.09 7.61 -2.39 -0.02 2.07 16 42 H 0.12 2.18 6.97 -2.39 -0.02 2.16 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 45 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -72.94 367.03 4.86 -68.08 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.44 Total: 24.69 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.72 Total: -1.95 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -3.65 Total: -115.92 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.03 Total: -17.73 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.48 Total: -4.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -72.94 4.86 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.180 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds