Wall clock time and date at job start Tue Mar 31 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.58389 * 2 1 4 4 C 1.53191 * 109.70052 * 239.64548 * 2 1 3 5 5 C 1.53044 * 109.31218 * 185.50256 * 4 2 1 6 6 H 1.08996 * 109.46420 * 301.34997 * 5 4 2 7 7 N 1.46501 * 109.46123 * 181.38499 * 5 4 2 8 8 C 1.36934 * 120.00218 * 155.00367 * 7 5 4 9 9 H 1.08004 * 119.99408 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00201 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99944 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99856 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47095 * 90.00839 * 12 10 8 14 14 H 1.48500 * 109.47352 * 210.00127 * 12 10 8 15 15 H 1.48495 * 109.47402 * 330.00659 * 12 10 8 16 16 C 1.53038 * 109.53439 * 61.36596 * 5 4 2 17 17 C 1.53623 * 109.24533 * 298.50960 * 16 5 4 18 18 N 1.46915 * 109.58937 * 120.28378 * 2 1 3 19 19 C 1.34783 * 120.63163 * 353.51597 * 18 2 1 20 20 O 1.21278 * 119.99978 * 354.22396 * 19 18 2 21 21 C 1.50697 * 120.00160 * 174.22408 * 19 18 2 22 22 C 1.50692 * 109.47346 * 179.97438 * 21 19 18 23 23 C 1.38418 * 120.02814 * 269.72393 * 22 21 19 24 24 F 1.35107 * 120.01142 * 0.02562 * 23 22 21 25 25 C 1.38470 * 119.97675 * 179.74246 * 23 22 21 26 26 C 1.38205 * 120.02788 * 0.53220 * 25 23 22 27 27 C 1.38206 * 120.04689 * 359.74706 * 26 25 23 28 28 C 1.38419 * 120.02674 * 89.99635 * 22 21 19 29 29 F 1.35097 * 120.01086 * 0.02562 * 28 22 21 30 30 H 1.09003 * 109.46213 * 305.47001 * 1 2 3 31 31 H 1.08993 * 109.46935 * 65.46855 * 1 2 3 32 32 H 1.08993 * 109.46725 * 185.47276 * 1 2 3 33 33 H 1.08997 * 109.49981 * 305.45648 * 4 2 1 34 34 H 1.09001 * 109.50187 * 65.55729 * 4 2 1 35 35 H 0.97003 * 119.99945 * 335.00547 * 7 5 4 36 36 H 0.96996 * 119.99978 * 179.97438 * 11 10 8 37 37 H 1.09010 * 109.50051 * 58.58708 * 16 5 4 38 38 H 1.09001 * 109.49873 * 178.64624 * 16 5 4 39 39 H 1.08993 * 109.73879 * 295.12359 * 17 16 5 40 40 H 1.09003 * 109.66774 * 174.54555 * 17 16 5 41 41 H 1.09004 * 109.47364 * 300.00177 * 21 19 18 42 42 H 1.09009 * 109.47164 * 59.99611 * 21 19 18 43 43 H 1.08003 * 119.98746 * 180.27313 * 25 23 22 44 44 H 1.07998 * 119.97821 * 179.76066 * 26 25 23 45 45 H 1.07998 * 119.99127 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8442 -1.1675 6 1 4.0072 0.1520 -1.0966 7 7 4.0711 -1.5115 -2.3719 8 6 5.3556 -1.2921 -2.7926 9 1 5.9999 -0.6274 -2.2362 10 6 5.8299 -1.9247 -3.9335 11 7 5.0448 -2.7351 -4.6112 12 14 7.5819 -1.6248 -4.5077 13 1 8.4861 -2.6219 -3.8802 14 1 7.6482 -1.7575 -5.9853 15 1 8.0045 -0.2567 -4.1142 16 6 3.9603 -1.6607 0.0669 17 6 3.4662 -0.9375 1.3289 18 7 2.0226 -0.6980 1.1952 19 6 1.1673 -1.1060 2.1536 20 8 -0.0062 -0.8072 2.0863 21 6 1.6689 -1.9335 3.3089 22 6 0.5221 -2.2550 4.2320 23 6 0.2181 -1.4048 5.2812 24 9 0.9494 -0.2859 5.4779 25 6 -0.8393 -1.6985 6.1256 26 6 -1.5843 -2.8456 5.9277 27 6 -1.2782 -3.6982 4.8839 28 6 -0.2248 -3.4035 4.0347 29 9 0.0744 -4.2373 3.0147 30 1 -0.3632 0.5964 0.8370 31 1 -0.3633 0.4267 -0.9349 32 1 -0.3632 -1.0229 0.0980 33 1 1.6080 -1.7257 -1.2906 34 1 1.7689 -0.1672 -2.1365 35 1 3.4925 -2.1087 -2.8714 36 1 5.3762 -3.1769 -5.4086 37 1 3.5038 -2.6488 0.0085 38 1 5.0447 -1.7629 0.1080 39 1 3.9861 0.0145 1.4350 40 1 3.6539 -1.5585 2.2049 41 1 2.1025 -2.8595 2.9313 42 1 2.4281 -1.3730 3.8546 43 1 -1.0794 -1.0331 6.9416 44 1 -2.4065 -3.0759 6.5891 45 1 -1.8613 -4.5941 4.7299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044725699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:38 Heat of formation + Delta-G solvation = -77.183802 kcal Electronic energy + Delta-G solvation = -29845.463535 eV Core-core repulsion = 25499.545204 eV Total energy + Delta-G solvation = -4345.918331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.25694 -49.20522 -40.50077 -39.04425 -37.36239 -34.51150 -33.79876 -32.17976 -31.91904 -30.58397 -29.35425 -27.92627 -26.88119 -24.31731 -23.16532 -22.99542 -22.92302 -21.40912 -20.11100 -18.94202 -18.38281 -17.63835 -17.16697 -16.92971 -16.43489 -15.99716 -15.84892 -15.75983 -15.48890 -15.16197 -14.84137 -14.66016 -14.03481 -13.98304 -13.68839 -13.59382 -13.38292 -13.19644 -13.04694 -12.75848 -12.44227 -12.23755 -12.12301 -12.06350 -11.75577 -11.62965 -11.58033 -11.34557 -10.92402 -10.84304 -10.76032 -10.45218 -10.25562 -9.86716 -9.72786 -9.32508 -9.03548 -8.93269 -8.88899 -8.41156 -6.99718 -5.79155 -3.08514 0.65532 0.68772 2.65430 2.91384 3.20226 3.41145 3.46402 3.48258 3.61660 4.10470 4.11639 4.33820 4.47071 4.54953 4.57492 4.82115 5.04310 5.07604 5.16881 5.17731 5.29206 5.35942 5.46716 5.49840 5.56478 5.58739 5.60736 5.63594 5.72463 5.82535 5.82796 5.90809 6.01673 6.14425 6.26190 6.36516 6.43717 6.46113 6.48388 6.54765 6.74954 6.90059 7.03827 7.53123 7.66568 8.25261 8.39038 9.50229 10.07746 10.42462 11.43399 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.002566 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.038310 B =10909.635622 C =11048.947828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.105 3.895 18 N -0.601 5.601 19 C 0.520 3.480 20 O -0.533 6.533 21 C -0.108 4.108 22 C -0.132 4.132 23 C 0.141 3.859 24 F -0.129 7.129 25 C -0.165 4.165 26 C -0.064 4.064 27 C -0.164 4.164 28 C 0.143 3.857 29 F -0.126 7.126 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 1.095 23.356 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.018 4.018 18 N -0.335 5.335 19 C 0.308 3.692 20 O -0.411 6.411 21 C -0.147 4.147 22 C -0.134 4.134 23 C 0.121 3.879 24 F -0.107 7.107 25 C -0.184 4.184 26 C -0.082 4.082 27 C -0.183 4.183 28 C 0.123 3.877 29 F -0.105 7.105 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.498 1.335 23.196 26.383 hybrid contribution 1.226 -0.175 -0.752 1.448 sum -11.273 1.160 22.444 25.143 Atomic orbital electron populations 1.22178 0.92932 1.03390 1.00754 1.21306 0.95363 0.95118 0.83717 0.91164 1.22295 0.97555 1.00966 0.96531 1.20157 0.90885 0.94971 0.87107 0.93448 1.42433 1.12933 1.54287 1.26744 1.19226 0.89092 1.22188 1.06582 0.91177 1.24752 0.98159 0.99833 0.98192 1.69663 1.35382 1.33472 1.19513 0.86206 0.84595 0.77657 0.77816 1.21739 1.21787 1.20763 1.22762 1.01734 1.00023 0.94708 1.21996 0.79437 1.00708 0.99677 1.48191 1.07552 1.57578 1.20167 1.20190 0.86144 0.79935 0.82951 1.90738 1.17071 1.56720 1.76588 1.20628 0.96624 1.02541 0.94933 1.19322 1.00479 0.95592 0.98046 1.17145 0.91831 0.83488 0.95404 1.91523 1.75765 1.49016 1.94445 1.21158 0.96099 0.99810 1.01311 1.20822 0.98480 0.92482 0.96402 1.21189 0.98090 1.02519 0.96507 1.17179 0.95320 0.88542 0.86626 1.91549 1.92378 1.69692 1.56845 0.90726 0.93760 0.91928 0.91809 0.90604 0.78253 0.93482 0.92098 0.90600 0.91212 0.90520 0.87051 0.87312 0.84043 0.83950 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.62 37.16 0.28 -1.73 16 2 C 0.15 2.20 3.48 -67.60 -0.24 1.96 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.27 4.85 -26.61 -0.13 -2.40 16 5 C 0.18 3.41 2.73 -67.89 -0.19 3.23 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.73 5.12 -53.39 -0.27 -18.00 16 8 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 12 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.15 -2.49 5.67 -26.39 -0.15 -2.64 16 17 C 0.11 1.34 6.38 -3.48 -0.02 1.32 16 18 N -0.60 -8.50 2.97 -164.96 -0.49 -8.99 16 19 C 0.52 7.48 7.50 -10.98 -0.08 7.39 16 20 O -0.53 -8.91 11.60 5.56 0.06 -8.85 16 21 C -0.11 -1.23 3.84 -29.04 -0.11 -1.34 16 22 C -0.13 -1.52 4.38 -104.49 -0.46 -1.98 16 23 C 0.14 1.50 7.24 -39.43 -0.29 1.22 16 24 F -0.13 -1.47 16.47 2.25 0.04 -1.43 16 25 C -0.16 -1.33 10.02 -39.51 -0.40 -1.73 16 26 C -0.06 -0.44 10.04 -39.61 -0.40 -0.84 16 27 C -0.16 -1.39 10.03 -39.50 -0.40 -1.79 16 28 C 0.14 1.60 7.24 -39.43 -0.29 1.32 16 29 F -0.13 -1.60 16.48 2.25 0.04 -1.56 16 30 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.03 6.95 -51.93 -0.36 0.67 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.15 7.80 -40.82 -0.32 9.84 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 41 H 0.11 1.19 7.44 -51.93 -0.39 0.80 16 42 H 0.11 1.04 7.18 -51.92 -0.37 0.67 16 43 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -31.98 370.24 -8.72 -40.70 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.28 Total: 7.84 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.10 Total: -5.12 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.04 Total: -54.24 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.06 Total: -8.85 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.07 Total: -2.99 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.98 -8.72 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.480 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds