Wall clock time and date at job start Tue Mar 31 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 59.99968 * 12 10 8 14 14 H 1.48506 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47180 * 299.99612 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.50700 * 109.46438 * 180.02562 * 21 19 18 23 23 C 1.38208 * 119.99846 * 264.72215 * 22 21 19 24 24 C 1.38427 * 119.99730 * 179.82091 * 23 22 21 25 25 F 1.35102 * 120.00370 * 180.21170 * 24 23 22 26 26 C 1.38477 * 120.00453 * 0.41532 * 24 23 22 27 27 C 1.38165 * 119.99439 * 359.83907 * 26 24 23 28 28 C 1.38428 * 120.00181 * 85.00330 * 22 21 19 29 29 F 1.35099 * 119.99805 * 359.95504 * 28 22 21 30 30 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 31 31 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 32 32 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 33 33 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 34 34 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 35 35 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 36 36 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 38 38 H 1.08997 * 109.50123 * 178.64975 * 16 5 4 39 39 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 40 40 H 1.09001 * 109.58383 * 294.84486 * 17 16 5 41 41 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 42 42 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 43 43 H 1.07998 * 120.00109 * 0.02562 * 23 22 21 44 44 H 1.07996 * 120.00684 * 179.81323 * 26 24 23 45 45 H 1.08001 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.5211 -2.0601 -3.4531 14 1 7.8273 -2.4263 -5.7480 15 1 7.7611 -0.1943 -4.8029 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5217 -2.2526 4.2331 23 6 0.2842 -1.4603 5.3404 24 6 -0.7716 -1.7522 6.1867 25 9 -1.0064 -0.9753 7.2667 26 6 -1.5846 -2.8431 5.9288 27 6 -1.3439 -3.6383 4.8248 28 6 -0.2904 -3.3437 3.9758 29 9 -0.0553 -4.1210 2.8961 30 1 -0.3633 0.5968 0.8367 31 1 -0.3634 0.4261 -0.9351 32 1 -0.3635 -1.0229 0.0986 33 1 1.7659 -0.1695 -2.1366 34 1 1.6028 -1.7269 -1.2892 35 1 3.4850 -2.1161 -2.8713 36 1 5.3626 -3.1880 -5.4115 37 1 3.4982 -2.6529 0.0085 38 1 5.0411 -1.7701 0.1055 39 1 3.6518 -1.5690 2.1991 40 1 3.9903 0.0037 1.4316 41 1 2.1001 -2.8594 2.9317 42 1 2.4293 -1.3733 3.8544 43 1 0.9203 -0.6115 5.5434 44 1 -2.4065 -3.0727 6.5907 45 1 -1.9777 -4.4894 4.6238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:41 Heat of formation + Delta-G solvation = -78.382811 kcal Electronic energy + Delta-G solvation = -29502.927615 eV Core-core repulsion = 25156.957291 eV Total energy + Delta-G solvation = -4345.970324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.21810 -49.12612 -40.58689 -39.09860 -37.37288 -34.53189 -33.81558 -32.27056 -31.94833 -30.46077 -29.37837 -27.98480 -26.91418 -24.33896 -23.45215 -22.95634 -22.78092 -21.41578 -20.14260 -18.97445 -17.91629 -17.53391 -17.45961 -17.16093 -16.87804 -16.05214 -15.94631 -15.53425 -15.28793 -14.86025 -14.73525 -14.53891 -14.03566 -13.92021 -13.82138 -13.69728 -13.56016 -13.22813 -13.02731 -12.90985 -12.69057 -12.25568 -12.12541 -12.08579 -11.83726 -11.62028 -11.40186 -11.33100 -10.92054 -10.85958 -10.78347 -10.46628 -10.29395 -9.89311 -9.73891 -9.54502 -9.01382 -8.93780 -8.78039 -8.44558 -7.01169 -5.80204 -3.09707 0.62921 0.69153 2.61370 2.87373 3.19080 3.40625 3.45263 3.46503 3.80067 3.90383 4.12052 4.30151 4.52540 4.55073 4.59568 4.78443 4.97137 5.00996 5.14944 5.15441 5.27067 5.33179 5.38798 5.46548 5.53779 5.58486 5.61392 5.64760 5.73065 5.79240 5.80771 5.88476 5.99697 6.12294 6.24378 6.34284 6.42278 6.45840 6.46306 6.52619 6.72794 6.87753 7.01890 7.50066 7.64742 8.21880 8.37949 9.49052 10.06532 10.41143 11.42237 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002383 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.995638 B =11744.907272 C =11863.510213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.148 3.852 3 H 0.071 0.929 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.602 5.602 19 C 0.519 3.481 20 O -0.532 6.532 21 C -0.109 4.109 22 C -0.066 4.066 23 C -0.114 4.114 24 C 0.088 3.912 25 F -0.137 7.137 26 C -0.127 4.127 27 C -0.124 4.124 28 C 0.107 3.893 29 F -0.129 7.129 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 1.325 22.347 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.018 4.018 18 N -0.335 5.335 19 C 0.306 3.694 20 O -0.410 6.410 21 C -0.148 4.148 22 C -0.067 4.067 23 C -0.132 4.132 24 C 0.069 3.931 25 F -0.115 7.115 26 C -0.146 4.146 27 C -0.143 4.143 28 C 0.087 3.913 29 F -0.108 7.108 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.343 1.541 22.220 24.996 hybrid contribution 1.005 -0.218 -0.595 1.189 sum -10.338 1.323 21.625 24.005 Atomic orbital electron populations 1.22186 0.92934 1.03419 1.00782 1.21306 0.95363 0.95094 0.83721 0.91137 1.22301 0.97577 1.00967 0.96548 1.20152 0.90894 0.94937 0.87121 0.93468 1.42422 1.12953 1.54224 1.26785 1.19178 0.89138 1.22287 1.06623 0.91232 1.24754 0.98158 0.99800 0.98172 1.69651 1.35464 1.33349 1.19551 0.86282 0.84556 0.77473 0.77931 1.21273 1.21709 1.21267 1.22690 1.01775 1.00082 0.94785 1.21903 0.79483 1.00665 0.99733 1.48210 1.07615 1.57536 1.20161 1.20210 0.86138 0.80016 0.83032 1.90753 1.17058 1.56578 1.76608 1.20748 0.96671 1.02462 0.94969 1.19179 0.97296 0.94367 0.95893 1.20840 0.97881 1.00451 0.94068 1.17574 0.97270 0.91956 0.86289 1.91516 1.94053 1.73586 1.52381 1.20963 1.00451 0.94478 0.98665 1.20964 0.97427 1.01438 0.94474 1.17495 0.96644 0.91291 0.85840 1.91541 1.93797 1.73089 1.52347 0.90704 0.93763 0.91910 0.90612 0.91795 0.78247 0.93414 0.92113 0.90568 0.90475 0.91260 0.87115 0.87247 0.83840 0.83794 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.61 37.16 0.28 -1.67 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -2.22 4.84 -26.61 -0.13 -2.34 16 5 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.49 5.12 -53.39 -0.27 -17.77 16 8 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 9 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 12 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.11 1.25 6.35 -3.71 -0.02 1.23 16 18 N -0.60 -7.92 2.97 -165.22 -0.49 -8.41 16 19 C 0.52 6.83 7.49 -10.98 -0.08 6.75 16 20 O -0.53 -8.38 11.60 5.56 0.06 -8.32 16 21 C -0.11 -1.07 3.96 -29.03 -0.11 -1.19 16 22 C -0.07 -0.68 4.38 -104.56 -0.46 -1.14 16 23 C -0.11 -1.06 9.66 -39.52 -0.38 -1.44 16 24 C 0.09 0.82 7.30 -39.42 -0.29 0.54 16 25 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 26 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 27 C -0.12 -1.08 10.02 -39.52 -0.40 -1.48 16 28 C 0.11 1.17 7.24 -39.43 -0.29 0.88 16 29 F -0.13 -1.63 16.56 2.25 0.04 -1.59 16 30 H 0.07 1.12 6.54 -51.92 -0.34 0.78 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 33 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.11 1.04 7.57 -51.93 -0.39 0.65 16 42 H 0.11 0.77 7.61 -51.93 -0.40 0.37 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -31.52 371.45 -8.72 -40.25 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.31 Total: 7.60 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -3.09 Total: -5.90 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.04 Total: -53.23 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.06 Total: -8.32 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.52 -8.72 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.137 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds