Wall clock time and date at job start Tue Mar 31 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58760 * 2 1 4 4 C 1.53193 * 109.58594 * 239.57034 * 2 1 3 5 5 C 1.53036 * 109.31703 * 185.57731 * 4 2 1 6 6 H 1.08997 * 109.44975 * 301.35575 * 5 4 2 7 7 N 1.46498 * 109.46364 * 181.38547 * 5 4 2 8 8 C 1.36934 * 119.99894 * 154.93160 * 7 5 4 9 9 H 1.08003 * 120.00140 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99978 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99769 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99976 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 59.99968 * 12 10 8 14 14 H 1.48506 * 109.47265 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47180 * 299.99612 * 12 10 8 16 16 C 1.53042 * 109.53724 * 61.36519 * 5 4 2 17 17 C 1.53195 * 109.31533 * 298.64134 * 16 5 4 18 18 N 1.46923 * 108.77743 * 54.62819 * 17 16 5 19 19 C 1.34779 * 120.63132 * 126.37340 * 18 17 16 20 20 O 1.21274 * 120.00016 * 174.21636 * 19 18 17 21 21 C 1.50707 * 119.99435 * 354.21408 * 19 18 17 22 22 C 1.50700 * 109.46438 * 180.02562 * 21 19 18 23 23 C 1.38208 * 119.99846 * 264.72215 * 22 21 19 24 24 C 1.38427 * 119.99730 * 179.82091 * 23 22 21 25 25 F 1.35102 * 120.00370 * 180.21170 * 24 23 22 26 26 C 1.38477 * 120.00453 * 0.41532 * 24 23 22 27 27 C 1.38165 * 119.99439 * 359.83907 * 26 24 23 28 28 C 1.38428 * 120.00181 * 85.00330 * 22 21 19 29 29 F 1.35099 * 119.99805 * 359.95504 * 28 22 21 30 30 H 1.09008 * 109.46935 * 305.50052 * 1 2 3 31 31 H 1.08995 * 109.47648 * 65.50388 * 1 2 3 32 32 H 1.09003 * 109.47715 * 185.50551 * 1 2 3 33 33 H 1.09007 * 109.49463 * 65.62437 * 4 2 1 34 34 H 1.09000 * 109.49818 * 305.53584 * 4 2 1 35 35 H 0.96996 * 120.00135 * 334.93425 * 7 5 4 36 36 H 0.96997 * 120.00063 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49284 * 58.58873 * 16 5 4 38 38 H 1.08997 * 109.50123 * 178.64975 * 16 5 4 39 39 H 1.08994 * 109.59116 * 174.42313 * 17 16 5 40 40 H 1.09001 * 109.58383 * 294.84486 * 17 16 5 41 41 H 1.09000 * 109.47251 * 299.99897 * 21 19 18 42 42 H 1.08998 * 109.47160 * 60.00126 * 21 19 18 43 43 H 1.07998 * 120.00109 * 0.02562 * 23 22 21 44 44 H 1.07996 * 120.00684 * 179.81323 * 26 24 23 45 45 H 1.08001 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1692 6 1 4.0059 0.1459 -1.0995 7 7 4.0651 -1.5189 -2.3735 8 6 5.3491 -1.3013 -2.7967 9 1 5.9951 -0.6366 -2.2423 10 6 5.8205 -1.9351 -3.9382 11 7 5.0331 -2.7448 -4.6140 12 14 7.5723 -1.6389 -4.5150 13 1 8.5211 -2.0601 -3.4531 14 1 7.8273 -2.4263 -5.7480 15 1 7.7611 -0.1943 -4.8029 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9454 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0056 -0.8033 2.0883 21 6 1.6687 -1.9325 3.3095 22 6 0.5217 -2.2526 4.2331 23 6 0.2842 -1.4603 5.3404 24 6 -0.7716 -1.7522 6.1867 25 9 -1.0064 -0.9753 7.2667 26 6 -1.5846 -2.8431 5.9288 27 6 -1.3439 -3.6383 4.8248 28 6 -0.2904 -3.3437 3.9758 29 9 -0.0553 -4.1210 2.8961 30 1 -0.3633 0.5968 0.8367 31 1 -0.3634 0.4261 -0.9351 32 1 -0.3635 -1.0229 0.0986 33 1 1.7659 -0.1695 -2.1366 34 1 1.6028 -1.7269 -1.2892 35 1 3.4850 -2.1161 -2.8713 36 1 5.3626 -3.1880 -5.4115 37 1 3.4982 -2.6529 0.0085 38 1 5.0411 -1.7701 0.1055 39 1 3.6518 -1.5690 2.1991 40 1 3.9903 0.0037 1.4316 41 1 2.1001 -2.8594 2.9317 42 1 2.4293 -1.3733 3.8544 43 1 0.9203 -0.6115 5.5434 44 1 -2.4065 -3.0727 6.5907 45 1 -1.9777 -4.4894 4.6238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:40 Heat of formation + Delta-G solvation = -95.840978 kcal Electronic energy + Delta-G solvation = -29503.684657 eV Core-core repulsion = 25156.957291 eV Total energy + Delta-G solvation = -4346.727367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98174 -49.93352 -41.63600 -39.87938 -38.61757 -36.15514 -34.73730 -33.73591 -33.21452 -31.20247 -30.97297 -28.94643 -28.11884 -26.01470 -24.43470 -24.18755 -23.65668 -22.46224 -21.52997 -20.10822 -19.08478 -18.66772 -18.27644 -18.20665 -17.89246 -17.08506 -16.80008 -16.69861 -16.35457 -16.32693 -15.53880 -15.46049 -15.43025 -15.30692 -14.96514 -14.83675 -14.48704 -14.45938 -14.18508 -13.86084 -13.67606 -13.41012 -13.36608 -13.08776 -12.86649 -12.81032 -12.77216 -12.63699 -12.56928 -12.21649 -12.06892 -11.99979 -11.90508 -11.69262 -11.35767 -10.87056 -10.32574 -9.99200 -9.58362 -9.52488 -8.99967 -7.92083 -5.20939 -0.09416 0.01822 1.48784 1.51398 1.57304 1.61618 1.96382 2.39179 2.57761 3.10419 3.19692 3.40771 3.42755 3.58112 3.63218 3.74797 3.92853 4.00183 4.06140 4.11747 4.13196 4.27031 4.32713 4.35542 4.46787 4.58577 4.63654 4.70291 4.72349 4.82688 4.84491 4.93925 4.98990 5.02416 5.03090 5.08710 5.10207 5.16184 5.27636 5.41679 5.51653 5.56448 5.71276 5.77018 6.29265 6.47542 7.19919 7.35170 8.11291 8.34069 9.31502 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002383 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.995638 B =11744.907272 C =11863.510213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.153 3.847 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.080 0.920 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.278 1.278 16 C -0.142 4.142 17 C 0.113 3.887 18 N -0.605 5.605 19 C 0.515 3.485 20 O -0.561 6.561 21 C -0.105 4.105 22 C -0.078 4.078 23 C -0.115 4.115 24 C 0.078 3.922 25 F -0.140 7.140 26 C -0.121 4.121 27 C -0.124 4.124 28 C 0.080 3.920 29 F -0.146 7.146 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.145 0.855 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 2.366 24.896 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 H 0.104 0.896 4 C -0.162 4.162 5 C 0.065 3.935 6 H 0.068 0.932 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.202 1.202 14 H -0.227 1.227 15 H -0.204 1.204 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.338 5.338 19 C 0.304 3.696 20 O -0.441 6.441 21 C -0.144 4.144 22 C -0.079 4.079 23 C -0.134 4.134 24 C 0.059 3.941 25 F -0.119 7.119 26 C -0.139 4.139 27 C -0.143 4.143 28 C 0.060 3.940 29 F -0.125 7.125 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.179 0.821 44 H 0.188 0.812 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.743 2.614 24.835 27.186 hybrid contribution 0.714 -0.515 -1.309 1.578 sum -10.029 2.099 23.526 25.661 Atomic orbital electron populations 1.22028 0.93025 1.02008 1.01011 1.21198 0.95151 0.95529 0.83185 0.89635 1.22149 0.96066 1.00275 0.97756 1.20416 0.92006 0.94814 0.86264 0.93247 1.42668 1.12170 1.54402 1.28550 1.19601 0.90087 1.20914 1.05990 0.90181 1.25565 1.02051 1.00540 0.98978 1.69823 1.37278 1.35214 1.20110 0.85238 0.80246 0.77368 0.77076 1.20161 1.22719 1.20423 1.22463 1.01167 0.99214 0.95487 1.21960 0.78555 1.01816 0.98611 1.48264 1.08253 1.57451 1.19797 1.20775 0.85682 0.79611 0.83541 1.90741 1.18330 1.57586 1.77419 1.20790 0.97328 1.02397 0.93852 1.19277 0.97664 0.94528 0.96430 1.21034 0.98092 1.00653 0.93582 1.17782 0.97690 0.92348 0.86301 1.91510 1.94097 1.73742 1.52544 1.21259 1.00619 0.93557 0.98479 1.21220 0.96943 1.02030 0.94101 1.17897 0.97988 0.91978 0.86105 1.91495 1.94047 1.73620 1.53297 0.91005 0.93008 0.94017 0.91436 0.93476 0.79981 0.94219 0.93731 0.91375 0.86934 0.89229 0.86661 0.83744 0.82102 0.81226 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 7.61 71.98 0.55 -2.94 16 2 C 0.15 4.15 3.49 44.97 0.16 4.31 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.12 -4.06 4.84 30.67 0.15 -3.91 16 5 C 0.17 6.36 2.73 45.02 0.12 6.49 16 6 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 7 N -0.74 -36.22 5.12 -322.82 -1.65 -37.87 16 8 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 11 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 12 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 C -0.14 -4.35 5.66 30.67 0.17 -4.18 16 17 C 0.11 2.33 6.35 86.36 0.55 2.88 16 18 N -0.60 -14.67 2.97 -795.03 -2.36 -17.03 16 19 C 0.51 12.62 7.49 87.66 0.66 13.28 16 20 O -0.56 -17.18 11.60 -3.01 -0.03 -17.22 16 21 C -0.10 -1.79 3.96 29.10 0.12 -1.68 16 22 C -0.08 -1.48 4.38 -19.83 -0.09 -1.56 16 23 C -0.11 -1.89 9.66 22.31 0.22 -1.68 16 24 C 0.08 1.30 7.30 22.37 0.16 1.46 16 25 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 26 C -0.12 -1.69 10.02 22.31 0.22 -1.46 16 27 C -0.12 -1.98 10.02 22.31 0.22 -1.76 16 28 C 0.08 1.67 7.24 22.37 0.16 1.83 16 29 F -0.15 -3.67 16.56 44.97 0.74 -2.92 16 30 H 0.07 2.09 6.54 -2.38 -0.02 2.08 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.34 6.96 -2.39 -0.02 1.33 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.37 19.99 7.80 -92.71 -0.72 19.27 16 36 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 1.59 5.93 -2.39 -0.01 1.57 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.12 1.91 7.57 -2.39 -0.02 1.89 16 42 H 0.14 1.41 7.61 -2.39 -0.02 1.39 16 43 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -69.75 371.45 4.75 -65.00 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.30 Total: 28.26 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.67 Total: -4.64 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.73 Total: -114.10 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.03 Total: -17.22 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.52 Total: -4.61 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.75 4.75 -65.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.837 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds