Wall clock time and date at job start Tue Mar 31 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.58244 * 2 1 4 4 C 1.53184 * 109.70682 * 120.35794 * 2 1 3 5 5 C 1.53038 * 109.31748 * 174.49337 * 4 2 1 6 6 H 1.09001 * 109.45869 * 58.64082 * 5 4 2 7 7 N 1.46493 * 109.46111 * 178.61507 * 5 4 2 8 8 C 1.36945 * 120.00114 * 204.99796 * 7 5 4 9 9 H 1.07997 * 119.99400 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00304 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99796 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 119.99897 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47522 * 60.00005 * 12 10 8 14 14 H 1.48508 * 109.47067 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47234 * 299.99426 * 12 10 8 16 16 C 1.53039 * 109.53622 * 298.63581 * 5 4 2 17 17 C 1.53194 * 109.31483 * 61.36079 * 16 5 4 18 18 N 1.46923 * 109.58601 * 239.71841 * 2 1 3 19 19 C 1.34784 * 120.63129 * 6.44190 * 18 2 1 20 20 O 1.21279 * 119.99507 * 354.95708 * 19 18 2 21 21 C 1.50695 * 119.99996 * 174.96096 * 19 18 2 22 22 C 1.50702 * 109.46964 * 179.97438 * 21 19 18 23 23 C 1.38205 * 119.99981 * 264.71826 * 22 21 19 24 24 C 1.38433 * 119.99693 * 179.77057 * 23 22 21 25 25 F 1.35097 * 120.00114 * 180.23824 * 24 23 22 26 26 C 1.38471 * 119.99848 * 0.53092 * 24 23 22 27 27 C 1.38164 * 120.00199 * 359.72765 * 26 24 23 28 28 C 1.38434 * 119.99857 * 85.00266 * 22 21 19 29 29 F 1.35098 * 119.99813 * 359.97404 * 28 22 21 30 30 H 1.09001 * 109.47175 * 176.09336 * 1 2 3 31 31 H 1.09002 * 109.46811 * 296.09636 * 1 2 3 32 32 H 1.08998 * 109.47060 * 56.09059 * 1 2 3 33 33 H 1.09002 * 109.49614 * 294.44554 * 4 2 1 34 34 H 1.09005 * 109.49902 * 54.50527 * 4 2 1 35 35 H 0.97002 * 120.00530 * 24.99444 * 7 5 4 36 36 H 0.97003 * 119.99843 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.49301 * 301.41287 * 16 5 4 38 38 H 1.08995 * 109.49803 * 181.31434 * 16 5 4 39 39 H 1.08999 * 109.59006 * 185.58007 * 17 16 5 40 40 H 1.09000 * 109.58245 * 65.15195 * 17 16 5 41 41 H 1.08996 * 109.47160 * 299.99687 * 21 19 18 42 42 H 1.09001 * 109.47286 * 59.99202 * 21 19 18 43 43 H 1.07991 * 120.00164 * 0.03074 * 23 22 21 44 44 H 1.08003 * 119.99612 * 179.70199 * 26 24 23 45 45 H 1.07999 * 120.00045 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 1.2444 5 6 3.5706 -0.8443 1.1673 6 1 4.0071 0.1519 1.0962 7 7 4.0711 -1.5116 2.3716 8 6 5.3557 -1.2922 2.7923 9 1 5.9997 -0.6269 2.2364 10 6 5.8301 -1.9249 3.9331 11 7 5.0451 -2.7353 4.6108 12 14 7.5821 -1.6250 4.5072 13 1 7.7685 -0.1800 4.7946 14 1 7.8406 -2.4117 5.7400 15 1 8.5301 -2.0445 3.4440 16 6 3.9603 -1.6607 -0.0671 17 6 3.4654 -0.9424 -1.3265 18 7 2.0225 -0.6980 -1.1954 19 6 1.1670 -1.1067 -2.1533 20 8 -0.0285 -0.9817 -1.9920 21 6 1.6959 -1.7190 -3.4246 22 6 0.5429 -2.0878 -4.3221 23 6 0.0401 -3.3751 -4.3075 24 6 -1.0222 -3.7126 -5.1285 25 9 -1.5168 -4.9696 -5.1107 26 6 -1.5738 -2.7633 -5.9723 27 6 -1.0677 -1.4779 -5.9908 28 6 -0.0089 -1.1387 -5.1655 29 9 0.4860 0.1182 -5.1835 30 1 -0.3633 -1.0253 -0.0700 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5733 -0.8529 33 1 1.7689 -0.1673 2.1364 34 1 1.6076 -1.7255 1.2907 35 1 3.4926 -2.1088 2.8712 36 1 5.3767 -3.1777 5.4078 37 1 3.5037 -2.6487 -0.0087 38 1 5.0447 -1.7623 -0.1087 39 1 3.6523 -1.5664 -2.2004 40 1 3.9886 0.0077 -1.4346 41 1 2.3380 -1.0005 -3.9342 42 1 2.2705 -2.6138 -3.1853 43 1 0.4732 -4.1165 -3.6526 44 1 -2.3995 -3.0280 -6.6163 45 1 -1.4982 -0.7374 -6.6487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:43 Heat of formation + Delta-G solvation = -94.772934 kcal Electronic energy + Delta-G solvation = -29449.048693 eV Core-core repulsion = 25102.367640 eV Total energy + Delta-G solvation = -4346.681053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.95950 -49.94686 -41.64128 -39.87984 -38.61319 -36.15462 -34.74414 -33.73771 -33.20656 -31.21298 -30.97309 -28.94553 -28.11112 -26.01531 -24.43491 -24.19209 -23.64168 -22.47211 -21.54108 -20.12186 -19.09932 -18.64635 -18.26752 -18.20791 -17.87114 -17.00004 -16.78972 -16.70472 -16.47274 -16.33555 -15.52923 -15.46030 -15.40526 -15.35897 -14.97926 -14.79202 -14.50496 -14.39458 -14.17238 -13.87621 -13.65413 -13.44911 -13.34576 -13.07538 -12.92000 -12.82119 -12.80478 -12.61887 -12.54678 -12.21637 -12.05510 -12.00697 -11.91332 -11.68843 -11.34036 -10.87138 -10.31321 -9.97636 -9.57011 -9.52800 -8.99965 -7.92245 -5.21049 -0.09165 0.01468 1.48813 1.51330 1.57239 1.62903 1.95059 2.39107 2.57656 3.11019 3.18586 3.40545 3.42652 3.57766 3.62923 3.74774 3.93433 3.99981 4.06387 4.10744 4.12760 4.27564 4.32750 4.36018 4.46581 4.59318 4.63614 4.70275 4.72600 4.82897 4.85528 4.93951 4.99506 5.02205 5.03387 5.08908 5.10189 5.16205 5.27125 5.43232 5.51583 5.56340 5.71714 5.77041 6.29231 6.47473 7.20060 7.35194 8.11307 8.34006 9.31292 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002414 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.827860 B =11595.249951 C =11932.057840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.152 3.848 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.173 3.827 6 H 0.048 0.952 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.080 0.920 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.276 1.276 16 C -0.141 4.141 17 C 0.113 3.887 18 N -0.604 5.604 19 C 0.514 3.486 20 O -0.562 6.562 21 C -0.104 4.104 22 C -0.077 4.077 23 C -0.122 4.122 24 C 0.075 3.925 25 F -0.143 7.143 26 C -0.120 4.120 27 C -0.121 4.121 28 C 0.087 3.913 29 F -0.140 7.140 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 3.115 -25.330 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.065 3.935 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.098 0.902 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.202 1.202 16 C -0.182 4.182 17 C -0.010 4.010 18 N -0.337 5.337 19 C 0.303 3.697 20 O -0.441 6.441 21 C -0.143 4.143 22 C -0.079 4.079 23 C -0.140 4.140 24 C 0.056 3.944 25 F -0.122 7.122 26 C -0.139 4.139 27 C -0.140 4.140 28 C 0.067 3.933 29 F -0.119 7.119 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.770 3.273 -25.221 27.619 hybrid contribution 0.753 -0.451 1.286 1.557 sum -10.017 2.822 -23.935 26.100 Atomic orbital electron populations 1.22023 0.92894 1.02352 1.00496 1.21217 0.95223 0.95405 0.83305 0.89840 1.22137 0.95986 1.00354 0.97699 1.20417 0.92018 0.94802 0.86302 0.93391 1.42666 1.12136 1.54460 1.28513 1.19596 0.90082 1.20890 1.06038 0.90229 1.25555 1.02037 1.00533 0.98960 1.69822 1.37282 1.35206 1.20083 0.85243 0.80279 0.77357 0.77086 1.20466 1.22700 1.20155 1.22452 1.01152 0.99256 0.95339 1.21954 0.78551 1.01784 0.98668 1.48249 1.08228 1.57348 1.19899 1.20802 0.86166 0.77718 0.85026 1.90761 1.16829 1.56543 1.79978 1.20788 0.96756 1.04799 0.91967 1.19261 0.98660 0.92800 0.97170 1.21030 0.96502 0.96842 0.99672 1.17832 0.96234 0.80323 0.99993 1.91504 1.86804 1.38145 1.95703 1.21268 1.01565 0.91698 0.99362 1.21239 0.95296 0.97747 0.99707 1.17754 0.96547 0.79517 0.99443 1.91487 1.86755 1.37989 1.95641 0.93034 0.93188 0.91967 0.91531 0.93296 0.79944 0.94212 0.93504 0.91370 0.86881 0.89529 0.85363 0.84898 0.83101 0.81195 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 7.60 71.98 0.55 -2.85 16 2 C 0.15 4.14 3.48 44.97 0.16 4.30 16 3 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 4 C -0.12 -4.01 4.84 30.67 0.15 -3.86 16 5 C 0.17 6.32 2.73 45.02 0.12 6.45 16 6 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 7 N -0.74 -36.04 5.12 -322.83 -1.65 -37.69 16 8 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.28 13.06 21.65 0.28 -58.99 16 12 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 16 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 17 C 0.11 2.34 6.33 86.36 0.55 2.88 16 18 N -0.60 -14.67 2.97 -795.02 -2.36 -17.04 16 19 C 0.51 12.59 7.60 87.65 0.67 13.25 16 20 O -0.56 -17.30 11.43 -3.03 -0.03 -17.33 16 21 C -0.10 -1.75 4.00 29.10 0.12 -1.63 16 22 C -0.08 -1.46 4.38 -19.83 -0.09 -1.55 16 23 C -0.12 -2.24 9.66 22.31 0.22 -2.02 16 24 C 0.08 1.36 7.30 22.37 0.16 1.52 16 25 F -0.14 -2.82 17.27 44.97 0.78 -2.05 16 26 C -0.12 -1.67 10.02 22.31 0.22 -1.45 16 27 C -0.12 -1.74 10.02 22.31 0.22 -1.52 16 28 C 0.09 1.64 7.24 22.37 0.16 1.80 16 29 F -0.14 -2.91 16.57 44.97 0.74 -2.16 16 30 H 0.05 1.65 6.73 -2.39 -0.02 1.63 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.83 6.76 -2.39 -0.02 1.81 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.11 1.59 5.96 -2.39 -0.01 1.57 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.13 1.67 7.76 -2.39 -0.02 1.65 16 42 H 0.13 1.64 7.39 -2.39 -0.02 1.62 16 43 H 0.15 2.44 8.06 -2.92 -0.02 2.42 16 44 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -69.07 371.38 4.76 -64.31 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.30 Total: 28.15 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.68 Total: -4.43 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.73 Total: -113.72 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.03 Total: -17.33 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.52 Total: -4.21 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.07 4.76 -64.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.459 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds