Wall clock time and date at job start Tue Mar 31 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58613 * 2 1 4 4 C 1.53197 * 109.59086 * 239.57024 * 2 1 3 5 5 C 1.53045 * 109.31371 * 185.57620 * 4 2 1 6 6 H 1.09000 * 109.44660 * 181.37951 * 5 4 2 7 7 N 1.46499 * 109.46111 * 301.34611 * 5 4 2 8 8 C 1.36936 * 119.99846 * 205.06686 * 7 5 4 9 9 H 1.08000 * 120.00027 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99760 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00005 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99609 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46855 * 90.00272 * 12 10 8 14 14 H 1.48499 * 109.46951 * 209.99932 * 12 10 8 15 15 H 1.48494 * 109.47380 * 329.99815 * 12 10 8 16 16 C 1.53047 * 109.53527 * 61.36945 * 5 4 2 17 17 C 1.53197 * 109.30987 * 298.62967 * 16 5 4 18 18 N 1.46925 * 108.77309 * 54.64224 * 17 16 5 19 19 C 1.34776 * 120.63465 * 126.41449 * 18 17 16 20 20 O 1.21282 * 120.00063 * 174.20817 * 19 18 17 21 21 C 1.50695 * 119.99667 * 354.20536 * 19 18 17 22 22 C 1.50699 * 109.47256 * 180.02562 * 21 19 18 23 23 C 1.38206 * 120.00490 * 99.99708 * 22 21 19 24 24 C 1.38421 * 120.00136 * 179.97438 * 23 22 21 25 25 F 1.35103 * 120.00278 * 180.02562 * 24 23 22 26 26 C 1.38469 * 120.00079 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00250 * 359.97438 * 26 24 23 28 28 C 1.38436 * 119.99681 * 279.72588 * 22 21 19 29 29 F 1.35095 * 119.99915 * 0.02562 * 28 22 21 30 30 H 1.08993 * 109.47327 * 305.51568 * 1 2 3 31 31 H 1.09001 * 109.46779 * 65.51643 * 1 2 3 32 32 H 1.09003 * 109.47024 * 185.51340 * 1 2 3 33 33 H 1.09005 * 109.49587 * 65.62797 * 4 2 1 34 34 H 1.08998 * 109.49924 * 305.53151 * 4 2 1 35 35 H 0.97002 * 119.99987 * 25.07146 * 7 5 4 36 36 H 0.97004 * 119.99841 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.49965 * 58.58110 * 16 5 4 38 38 H 1.09000 * 109.49250 * 178.65128 * 16 5 4 39 39 H 1.08994 * 109.58211 * 174.42436 * 17 16 5 40 40 H 1.08995 * 109.58914 * 294.71208 * 17 16 5 41 41 H 1.09006 * 109.47366 * 300.00033 * 21 19 18 42 42 H 1.08996 * 109.47465 * 60.00051 * 21 19 18 43 43 H 1.08003 * 119.99794 * 359.95855 * 23 22 21 44 44 H 1.08004 * 119.99834 * 180.02562 * 26 24 23 45 45 H 1.07998 * 120.00347 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 1 3.9377 -1.3475 -2.0651 7 7 4.1571 0.4885 -1.0755 8 6 5.4410 0.7022 -1.5010 9 1 6.0188 -0.1154 -1.9059 10 6 5.9997 1.9698 -1.4119 11 7 5.2953 2.9663 -0.9189 12 14 7.7509 2.2615 -1.9931 13 1 7.7394 2.6385 -3.4294 14 1 8.3600 3.3581 -1.1983 15 1 8.5454 1.0198 -1.8135 16 6 3.9570 -1.6657 0.0657 17 6 3.4650 -0.9452 1.3251 18 7 2.0225 -0.6981 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0056 -0.8024 2.0885 21 6 1.6687 -1.9307 3.3105 22 6 0.5219 -2.2502 4.2345 23 6 -0.0925 -3.4866 4.1718 24 6 -1.1455 -3.7801 5.0209 25 9 -1.7457 -4.9890 4.9600 26 6 -1.5830 -2.8352 5.9336 27 6 -0.9682 -1.5995 5.9971 28 6 0.0874 -1.3071 5.1501 29 9 0.6911 -0.1003 5.2148 30 1 -0.3633 0.5970 0.8364 31 1 -0.3633 0.4259 -0.9353 32 1 -0.3633 -1.0229 0.0987 33 1 1.7661 -0.1695 -2.1366 34 1 1.6031 -1.7270 -1.2892 35 1 3.6380 1.2229 -0.7121 36 1 5.6859 3.8520 -0.8563 37 1 3.4983 -2.6528 0.0087 38 1 5.0412 -1.7699 0.1057 39 1 3.6518 -1.5689 2.1992 40 1 3.9920 0.0027 1.4331 41 1 2.1001 -2.8580 2.9333 42 1 2.4294 -1.3713 3.8549 43 1 0.2489 -4.2237 3.4600 44 1 -2.4044 -3.0644 6.5964 45 1 -1.3092 -0.8626 6.7093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:46 Heat of formation + Delta-G solvation = -75.733146 kcal Electronic energy + Delta-G solvation = -29949.676731 eV Core-core repulsion = 25603.821305 eV Total energy + Delta-G solvation = -4345.855426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.16107 -49.04576 -40.45988 -39.04199 -37.39380 -34.20477 -33.69157 -32.17032 -31.91178 -30.38674 -29.15749 -27.96691 -26.84751 -24.16233 -23.53288 -23.31594 -22.68827 -21.48542 -19.92298 -18.37245 -17.80121 -17.44903 -17.37937 -17.23388 -16.73184 -15.95481 -15.79110 -15.45003 -15.30886 -14.69630 -14.54757 -14.47794 -14.03763 -13.93329 -13.87228 -13.58230 -13.34566 -13.22539 -13.02676 -12.81258 -12.63598 -12.14732 -12.06105 -11.99460 -11.77946 -11.48426 -11.26209 -11.16413 -10.93781 -10.82387 -10.62876 -10.46010 -10.27067 -9.97678 -9.66686 -9.47628 -8.98151 -8.85551 -8.69551 -8.16707 -7.02041 -5.81679 -3.10946 0.70099 0.75769 2.78861 2.98581 3.33872 3.39707 3.45183 3.46873 3.87275 3.98035 4.20034 4.37092 4.54782 4.65947 4.69331 4.86336 5.08045 5.17313 5.23502 5.30033 5.38126 5.45023 5.51574 5.56956 5.65088 5.69148 5.70911 5.74411 5.80130 5.87481 5.88455 5.99455 6.11169 6.16076 6.29156 6.41033 6.47549 6.52642 6.58729 6.70239 6.76482 6.81948 7.04867 7.65471 7.72465 8.36641 8.39640 9.48099 10.04688 10.39462 11.40658 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002704 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.868765 B =10350.674405 C =10642.363628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.596 5.596 19 C 0.517 3.483 20 O -0.537 6.537 21 C -0.108 4.108 22 C -0.065 4.065 23 C -0.115 4.115 24 C 0.088 3.912 25 F -0.137 7.137 26 C -0.128 4.128 27 C -0.125 4.125 28 C 0.109 3.891 29 F -0.129 7.129 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -13.415 12.629 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.190 4.190 17 C -0.010 4.010 18 N -0.329 5.329 19 C 0.304 3.696 20 O -0.415 6.415 21 C -0.148 4.148 22 C -0.066 4.066 23 C -0.134 4.134 24 C 0.068 3.932 25 F -0.116 7.116 26 C -0.146 4.146 27 C -0.144 4.144 28 C 0.090 3.910 29 F -0.108 7.108 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.818 -13.233 12.502 21.704 hybrid contribution 1.055 0.457 -0.228 1.172 sum -10.763 -12.776 12.274 20.730 Atomic orbital electron populations 1.22182 0.93274 1.02915 1.00797 1.21253 0.94775 0.96096 0.83514 0.90206 1.22243 0.97374 1.00166 0.97386 1.20190 0.90435 0.88135 0.94932 0.93141 1.42517 1.13848 1.04683 1.75417 1.19223 0.89811 0.94146 1.33949 0.91206 1.24730 0.98280 0.95913 1.01872 1.69653 1.36526 1.00606 1.51189 0.86224 0.84618 0.77381 0.78140 1.21786 1.21846 1.20810 1.22515 1.01442 0.97881 0.97194 1.21761 0.79230 1.01920 0.98128 1.48152 1.07699 1.56937 1.20078 1.20167 0.86165 0.80244 0.83040 1.90742 1.17191 1.56935 1.76630 1.20740 0.96672 1.02346 0.95014 1.19211 0.98183 0.93041 0.96169 1.20852 0.95714 0.97232 0.99584 1.17566 0.94921 0.81844 0.98852 1.91513 1.82388 1.41965 1.95719 1.20946 1.01530 0.92723 0.99447 1.20951 0.95582 0.97704 1.00139 1.17486 0.94424 0.81433 0.97695 1.91536 1.81932 1.41812 1.95471 0.90640 0.94006 0.92282 0.90753 0.92161 0.78116 0.93470 0.93294 0.90759 0.91230 0.89539 0.87294 0.87310 0.83833 0.83853 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.61 37.15 0.28 -1.86 16 2 C 0.15 2.43 3.19 -67.60 -0.22 2.22 16 3 H 0.08 1.53 6.65 -51.93 -0.35 1.18 16 4 C -0.13 -2.14 5.07 -26.61 -0.13 -2.28 16 5 C 0.17 3.17 3.10 -67.88 -0.21 2.96 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 N -0.72 -16.66 4.31 -53.38 -0.23 -16.89 16 8 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 12 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.15 -2.32 5.78 -26.61 -0.15 -2.48 16 17 C 0.11 1.67 6.09 -3.71 -0.02 1.65 16 18 N -0.60 -9.18 2.97 -165.22 -0.49 -9.67 16 19 C 0.52 7.66 7.49 -10.99 -0.08 7.58 16 20 O -0.54 -9.25 11.53 5.56 0.06 -9.19 16 21 C -0.11 -1.21 3.91 -29.04 -0.11 -1.32 16 22 C -0.06 -0.73 4.43 -104.56 -0.46 -1.20 16 23 C -0.11 -1.17 9.65 -39.53 -0.38 -1.55 16 24 C 0.09 0.88 7.30 -39.43 -0.29 0.59 16 25 F -0.14 -1.42 17.27 2.25 0.04 -1.39 16 26 C -0.13 -1.11 10.02 -39.52 -0.40 -1.51 16 27 C -0.12 -1.17 10.02 -39.52 -0.40 -1.57 16 28 C 0.11 1.29 7.14 -39.42 -0.28 1.01 16 29 F -0.13 -1.74 16.66 2.25 0.04 -1.70 16 30 H 0.07 1.31 6.54 -51.93 -0.34 0.97 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.96 6.96 -51.93 -0.36 0.59 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.38 9.54 6.07 -40.82 -0.25 9.29 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 40 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 41 H 0.11 0.95 7.79 -51.93 -0.40 0.54 16 42 H 0.11 1.13 7.50 -51.93 -0.39 0.74 16 43 H 0.14 1.21 8.04 -52.48 -0.42 0.79 16 44 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 45 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -30.34 367.14 -8.59 -38.93 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.14 Total: 8.71 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.10 Total: -4.57 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.00 Total: -52.96 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.19 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.34 -8.59 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.803 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds