Wall clock time and date at job start Tue Mar 31 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58613 * 2 1 4 4 C 1.53197 * 109.59086 * 239.57024 * 2 1 3 5 5 C 1.53045 * 109.31371 * 185.57620 * 4 2 1 6 6 H 1.09000 * 109.44660 * 181.37951 * 5 4 2 7 7 N 1.46499 * 109.46111 * 301.34611 * 5 4 2 8 8 C 1.36936 * 119.99846 * 205.06686 * 7 5 4 9 9 H 1.08000 * 120.00027 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99760 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00005 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99609 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46855 * 90.00272 * 12 10 8 14 14 H 1.48499 * 109.46951 * 209.99932 * 12 10 8 15 15 H 1.48494 * 109.47380 * 329.99815 * 12 10 8 16 16 C 1.53047 * 109.53527 * 61.36945 * 5 4 2 17 17 C 1.53197 * 109.30987 * 298.62967 * 16 5 4 18 18 N 1.46925 * 108.77309 * 54.64224 * 17 16 5 19 19 C 1.34776 * 120.63465 * 126.41449 * 18 17 16 20 20 O 1.21282 * 120.00063 * 174.20817 * 19 18 17 21 21 C 1.50695 * 119.99667 * 354.20536 * 19 18 17 22 22 C 1.50699 * 109.47256 * 180.02562 * 21 19 18 23 23 C 1.38206 * 120.00490 * 99.99708 * 22 21 19 24 24 C 1.38421 * 120.00136 * 179.97438 * 23 22 21 25 25 F 1.35103 * 120.00278 * 180.02562 * 24 23 22 26 26 C 1.38469 * 120.00079 * 359.97438 * 24 23 22 27 27 C 1.38164 * 120.00250 * 359.97438 * 26 24 23 28 28 C 1.38436 * 119.99681 * 279.72588 * 22 21 19 29 29 F 1.35095 * 119.99915 * 0.02562 * 28 22 21 30 30 H 1.08993 * 109.47327 * 305.51568 * 1 2 3 31 31 H 1.09001 * 109.46779 * 65.51643 * 1 2 3 32 32 H 1.09003 * 109.47024 * 185.51340 * 1 2 3 33 33 H 1.09005 * 109.49587 * 65.62797 * 4 2 1 34 34 H 1.08998 * 109.49924 * 305.53151 * 4 2 1 35 35 H 0.97002 * 119.99987 * 25.07146 * 7 5 4 36 36 H 0.97004 * 119.99841 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.49965 * 58.58110 * 16 5 4 38 38 H 1.09000 * 109.49250 * 178.65128 * 16 5 4 39 39 H 1.08994 * 109.58211 * 174.42436 * 17 16 5 40 40 H 1.08995 * 109.58914 * 294.71208 * 17 16 5 41 41 H 1.09006 * 109.47366 * 300.00033 * 21 19 18 42 42 H 1.08996 * 109.47465 * 60.00051 * 21 19 18 43 43 H 1.08003 * 119.99794 * 359.95855 * 23 22 21 44 44 H 1.08004 * 119.99834 * 180.02562 * 26 24 23 45 45 H 1.07998 * 120.00347 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 1 3.9377 -1.3475 -2.0651 7 7 4.1571 0.4885 -1.0755 8 6 5.4410 0.7022 -1.5010 9 1 6.0188 -0.1154 -1.9059 10 6 5.9997 1.9698 -1.4119 11 7 5.2953 2.9663 -0.9189 12 14 7.7509 2.2615 -1.9931 13 1 7.7394 2.6385 -3.4294 14 1 8.3600 3.3581 -1.1983 15 1 8.5454 1.0198 -1.8135 16 6 3.9570 -1.6657 0.0657 17 6 3.4650 -0.9452 1.3251 18 7 2.0225 -0.6981 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0056 -0.8024 2.0885 21 6 1.6687 -1.9307 3.3105 22 6 0.5219 -2.2502 4.2345 23 6 -0.0925 -3.4866 4.1718 24 6 -1.1455 -3.7801 5.0209 25 9 -1.7457 -4.9890 4.9600 26 6 -1.5830 -2.8352 5.9336 27 6 -0.9682 -1.5995 5.9971 28 6 0.0874 -1.3071 5.1501 29 9 0.6911 -0.1003 5.2148 30 1 -0.3633 0.5970 0.8364 31 1 -0.3633 0.4259 -0.9353 32 1 -0.3633 -1.0229 0.0987 33 1 1.7661 -0.1695 -2.1366 34 1 1.6031 -1.7270 -1.2892 35 1 3.6380 1.2229 -0.7121 36 1 5.6859 3.8520 -0.8563 37 1 3.4983 -2.6528 0.0087 38 1 5.0412 -1.7699 0.1057 39 1 3.6518 -1.5689 2.1992 40 1 3.9920 0.0027 1.4331 41 1 2.1001 -2.8580 2.9333 42 1 2.4294 -1.3713 3.8549 43 1 0.2489 -4.2237 3.4600 44 1 -2.4044 -3.0644 6.5964 45 1 -1.3092 -0.8626 6.7093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:46 Heat of formation + Delta-G solvation = -91.770344 kcal Electronic energy + Delta-G solvation = -29950.372156 eV Core-core repulsion = 25603.821305 eV Total energy + Delta-G solvation = -4346.550851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.96715 -49.92611 -41.65051 -39.90210 -38.69852 -35.84328 -34.71826 -33.69906 -33.19312 -31.16792 -30.83636 -28.98121 -28.10391 -25.74374 -25.16882 -24.14797 -23.64820 -22.60970 -21.19100 -19.69066 -19.16230 -18.63034 -18.25425 -18.19617 -17.87365 -17.06499 -16.77739 -16.71153 -16.33467 -16.17596 -15.66426 -15.45580 -15.38642 -15.34582 -14.93512 -14.81728 -14.58700 -14.22406 -14.20243 -13.99069 -13.69331 -13.48605 -13.30103 -12.95796 -12.88608 -12.84794 -12.76516 -12.61802 -12.44808 -12.10983 -12.04805 -11.94141 -11.90803 -11.59778 -11.36799 -10.88492 -10.30979 -9.96245 -9.53193 -9.48491 -8.94510 -7.89570 -5.16816 -0.08449 0.02495 1.49737 1.50399 1.58414 1.64603 1.98358 2.40396 2.59533 3.11006 3.21189 3.42768 3.44493 3.59036 3.65354 3.89456 3.97339 4.02442 4.04644 4.11472 4.12022 4.31691 4.33168 4.39555 4.46713 4.52391 4.66069 4.73479 4.80336 4.86391 4.92661 4.94573 4.99558 5.03353 5.09577 5.11556 5.15107 5.27029 5.28249 5.38083 5.42697 5.58947 5.74892 5.77993 6.32392 6.53809 7.22011 7.39203 8.16051 8.38485 9.33866 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002704 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.868765 B =10350.674405 C =10642.363628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.147 3.853 3 H 0.045 0.955 4 C -0.121 4.121 5 C 0.164 3.836 6 H 0.048 0.952 7 N -0.732 5.732 8 C -0.228 4.228 9 H 0.078 0.922 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.293 1.293 14 H -0.302 1.302 15 H -0.267 1.267 16 C -0.139 4.139 17 C 0.117 3.883 18 N -0.598 5.598 19 C 0.513 3.487 20 O -0.563 6.563 21 C -0.102 4.102 22 C -0.078 4.078 23 C -0.116 4.116 24 C 0.078 3.922 25 F -0.140 7.140 26 C -0.120 4.120 27 C -0.124 4.124 28 C 0.082 3.918 29 F -0.146 7.146 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.372 0.628 36 H 0.247 0.753 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.142 0.858 42 H 0.116 0.884 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -16.235 13.335 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 H 0.063 0.937 4 C -0.159 4.159 5 C 0.056 3.944 6 H 0.066 0.934 7 N -0.373 5.373 8 C -0.360 4.360 9 H 0.096 0.904 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.221 1.221 14 H -0.229 1.229 15 H -0.192 1.192 16 C -0.180 4.180 17 C -0.005 4.005 18 N -0.330 5.330 19 C 0.302 3.698 20 O -0.443 6.443 21 C -0.142 4.142 22 C -0.079 4.079 23 C -0.135 4.135 24 C 0.059 3.941 25 F -0.119 7.119 26 C -0.138 4.138 27 C -0.143 4.143 28 C 0.062 3.938 29 F -0.125 7.125 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.159 0.841 42 H 0.134 0.866 43 H 0.179 0.821 44 H 0.189 0.811 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.094 -16.124 13.207 24.097 hybrid contribution 1.023 1.256 -0.422 1.674 sum -11.071 -14.868 12.785 22.519 Atomic orbital electron populations 1.22002 0.92558 1.02590 1.00456 1.21087 0.95148 0.94686 0.84711 0.93725 1.22117 0.95877 1.01253 0.96699 1.20466 0.91547 0.86143 0.96239 0.93370 1.42696 1.13057 1.06425 1.75169 1.19606 0.90802 0.93992 1.31619 0.90428 1.25455 1.01851 0.96096 1.03441 1.69817 1.38046 1.00664 1.53713 0.85239 0.80800 0.77284 0.77041 1.22055 1.22867 1.19194 1.22367 1.01217 0.98845 0.95571 1.21708 0.78528 1.00667 0.99625 1.48171 1.07982 1.56935 1.19960 1.20802 0.85724 0.79937 0.83330 1.90732 1.18430 1.57878 1.77240 1.20762 0.96891 1.03050 0.93462 1.19270 0.98714 0.93496 0.96424 1.21036 0.95513 0.97116 0.99799 1.17760 0.95086 0.81993 0.99261 1.91510 1.82424 1.42155 1.95766 1.21257 1.01624 0.91886 0.99070 1.21216 0.94701 0.98453 0.99893 1.17898 0.95603 0.81167 0.99100 1.91490 1.82407 1.42892 1.95701 0.92528 0.93111 0.92106 0.91536 0.89633 0.79516 0.94375 0.89903 0.91512 0.87226 0.93422 0.84064 0.86614 0.82116 0.81130 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 7.61 71.98 0.55 -3.21 16 2 C 0.15 4.91 3.19 44.97 0.14 5.05 16 3 H 0.04 1.81 6.65 -2.39 -0.02 1.79 16 4 C -0.12 -3.77 5.07 30.68 0.16 -3.61 16 5 C 0.16 5.83 3.10 45.02 0.14 5.97 16 6 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 7 N -0.73 -34.20 4.31 -322.80 -1.39 -35.60 16 8 C -0.23 -11.91 9.93 84.03 0.83 -11.07 16 9 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 10 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 11 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 12 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 C -0.14 -4.01 5.78 30.68 0.18 -3.84 16 17 C 0.12 3.32 6.09 86.36 0.53 3.85 16 18 N -0.60 -17.84 2.97 -795.02 -2.36 -20.20 16 19 C 0.51 14.52 7.49 87.66 0.66 15.18 16 20 O -0.56 -19.07 11.53 -3.04 -0.03 -19.10 16 21 C -0.10 -2.04 3.91 29.10 0.11 -1.93 16 22 C -0.08 -1.62 4.43 -19.83 -0.09 -1.70 16 23 C -0.12 -2.07 9.65 22.31 0.22 -1.86 16 24 C 0.08 1.38 7.30 22.37 0.16 1.54 16 25 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 26 C -0.12 -1.78 10.02 22.31 0.22 -1.56 16 27 C -0.12 -2.11 10.02 22.31 0.22 -1.89 16 28 C 0.08 1.84 7.14 22.37 0.16 2.00 16 29 F -0.15 -3.92 16.66 44.97 0.75 -3.18 16 30 H 0.06 2.00 6.54 -2.39 -0.02 1.99 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.90 6.96 -2.39 -0.02 1.88 16 33 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.37 19.19 6.07 -92.71 -0.56 18.62 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.22 5.93 -2.39 -0.01 2.21 16 40 H 0.05 1.75 7.74 -2.39 -0.02 1.73 16 41 H 0.14 1.86 7.79 -2.38 -0.02 1.85 16 42 H 0.12 2.16 7.50 -2.39 -0.02 2.15 16 43 H 0.16 2.20 8.04 -2.91 -0.02 2.17 16 44 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 45 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -67.45 367.14 5.17 -62.28 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.46 Total: 29.47 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 4.66 Total: -0.85 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.47 Total: -113.91 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.03 Total: -19.10 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 1.53 Total: -4.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.45 5.17 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.489 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds