Wall clock time and date at job start Tue Mar 31 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.59226 * 2 1 4 4 C 1.53194 * 109.71481 * 120.36443 * 2 1 3 5 5 C 1.53044 * 109.31475 * 65.19650 * 4 2 1 6 6 H 1.09000 * 109.45870 * 301.37476 * 5 4 2 7 7 N 1.46500 * 109.45958 * 181.39734 * 5 4 2 8 8 C 1.36935 * 119.99795 * 154.97124 * 7 5 4 9 9 H 1.08006 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99934 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99927 * 12 10 8 16 16 C 1.53039 * 109.52234 * 61.38891 * 5 4 2 17 17 C 1.53195 * 109.31292 * 298.62478 * 16 5 4 18 18 N 1.46925 * 109.58414 * 239.71391 * 2 1 3 19 19 C 1.34782 * 120.62976 * 113.66009 * 18 2 1 20 20 O 1.21277 * 120.00072 * 0.02562 * 19 18 2 21 21 C 1.50699 * 119.99887 * 180.02562 * 19 18 2 22 22 C 1.50700 * 109.46909 * 179.97438 * 21 19 18 23 23 C 1.38207 * 120.00148 * 99.99666 * 22 21 19 24 24 C 1.38430 * 120.00166 * 179.97438 * 23 22 21 25 25 F 1.35098 * 120.00274 * 179.97438 * 24 23 22 26 26 C 1.38475 * 119.99728 * 0.02562 * 24 23 22 27 27 C 1.38157 * 120.00124 * 0.02562 * 26 24 23 28 28 C 1.38427 * 120.00084 * 279.72105 * 22 21 19 29 29 F 1.35104 * 119.99943 * 0.02794 * 28 22 21 30 30 H 1.08995 * 109.47039 * 180.28443 * 1 2 3 31 31 H 1.09007 * 109.46777 * 300.28652 * 1 2 3 32 32 H 1.09005 * 109.46876 * 60.28082 * 1 2 3 33 33 H 1.09005 * 109.48387 * 305.25404 * 4 2 1 34 34 H 1.09002 * 109.50950 * 185.16059 * 4 2 1 35 35 H 0.96997 * 120.00022 * 334.97598 * 7 5 4 36 36 H 0.97004 * 120.00335 * 0.02562 * 11 10 8 37 37 H 1.09003 * 109.50258 * 58.58023 * 16 5 4 38 38 H 1.09006 * 109.49840 * 178.64745 * 16 5 4 39 39 H 1.09000 * 109.58661 * 174.42797 * 17 16 5 40 40 H 1.08996 * 109.58886 * 294.71046 * 17 16 5 41 41 H 1.08997 * 109.47191 * 299.99807 * 21 19 18 42 42 H 1.08992 * 109.47119 * 60.00207 * 21 19 18 43 43 H 1.07996 * 119.99901 * 0.02562 * 23 22 21 44 44 H 1.08000 * 119.99701 * 179.97438 * 26 24 23 45 45 H 1.08002 * 120.00181 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0468 -0.7290 1.2443 5 6 1.6472 -2.2044 1.1691 6 1 0.5623 -2.2837 1.0994 7 7 2.1109 -2.8977 2.3735 8 6 1.4758 -4.0348 2.7963 9 1 0.6332 -4.4207 2.2417 10 6 1.9148 -4.6914 3.9378 11 7 2.9413 -4.2208 4.6139 12 14 1.0488 -6.2429 4.5142 13 1 -0.0672 -6.5604 3.5873 14 1 0.5105 -6.0303 5.8818 15 1 2.0142 -7.3711 4.5321 16 6 2.2856 -2.8449 -0.0655 17 6 1.7718 -2.1400 -1.3249 18 7 2.0225 -0.6981 -1.1953 19 6 2.6912 -0.0284 -2.1550 20 8 2.8918 1.1617 -2.0363 21 6 3.1895 -0.7585 -3.3755 22 6 3.8977 0.2108 -4.2864 23 6 5.2783 0.2754 -4.2876 24 6 5.9289 1.1654 -5.1248 25 9 7.2783 1.2289 -5.1256 26 6 5.1964 1.9915 -5.9606 27 6 3.8163 1.9277 -5.9586 28 6 3.1657 1.0326 -5.1261 29 9 1.8163 0.9660 -5.1286 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.6110 -0.2791 2.1365 34 1 3.1329 -0.6480 1.2889 35 1 2.8678 -2.5512 2.8714 36 1 3.3908 -3.4149 4.3149 37 1 3.3694 -2.7438 -0.0086 38 1 2.0203 -3.9014 -0.1056 39 1 2.2968 -2.5251 -2.1991 40 1 0.7020 -2.3187 -1.4330 41 1 3.8814 -1.5440 -3.0717 42 1 2.3454 -1.2021 -3.9034 43 1 5.8495 -0.3692 -3.6361 44 1 5.7039 2.6862 -6.6134 45 1 3.2449 2.5723 -6.6102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:48 Heat of formation + Delta-G solvation = -110.769929 kcal Electronic energy + Delta-G solvation = -29424.457778 eV Core-core repulsion = 25077.083044 eV Total energy + Delta-G solvation = -4347.374735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98670 -49.97090 -41.58731 -39.97292 -38.85067 -36.51687 -34.56748 -33.80130 -33.20149 -31.22272 -30.85026 -28.90120 -28.50953 -25.80033 -24.55215 -24.23248 -23.75633 -22.87950 -21.56528 -19.72460 -19.17935 -18.67721 -18.52953 -18.28792 -18.20308 -17.13835 -16.75021 -16.45102 -16.38122 -16.28679 -16.07784 -15.49670 -15.42920 -15.37736 -15.05253 -14.97459 -14.67173 -14.35031 -14.29658 -14.02991 -13.74607 -13.68463 -13.29636 -13.05299 -12.93193 -12.84251 -12.74843 -12.61279 -12.34349 -12.14513 -12.06606 -11.97931 -11.84125 -11.50151 -11.07082 -11.00961 -10.85324 -10.16016 -9.72826 -9.57315 -9.10556 -8.36147 -5.30544 -0.12539 -0.01947 1.53559 1.59681 1.70755 1.81729 1.87196 2.34961 2.72616 3.07360 3.16009 3.36776 3.42704 3.46521 3.59503 3.65108 3.83445 3.94891 3.97664 4.02777 4.07430 4.17452 4.26541 4.28986 4.40960 4.45572 4.51846 4.55741 4.66319 4.74453 4.75697 4.90814 4.94848 4.96144 4.97859 4.99038 4.99554 5.06763 5.18971 5.25841 5.47229 5.57531 5.63912 5.73800 6.36631 6.51285 7.07549 7.11201 8.01078 8.14261 9.15812 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.002449 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.334148 B =11431.430379 C =12058.628360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.751 5.751 8 C -0.320 4.320 9 H 0.071 0.929 10 C -0.109 4.109 11 N -0.981 5.981 12 Si 1.130 2.870 13 H -0.268 1.268 14 H -0.295 1.295 15 H -0.294 1.294 16 C -0.141 4.141 17 C 0.112 3.888 18 N -0.600 5.600 19 C 0.516 3.484 20 O -0.579 6.579 21 C -0.101 4.101 22 C -0.081 4.081 23 C -0.122 4.122 24 C 0.076 3.924 25 F -0.142 7.142 26 C -0.119 4.119 27 C -0.122 4.122 28 C 0.087 3.913 29 F -0.141 7.141 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.355 0.645 36 H 0.243 0.757 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.172 0.828 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.221 9.984 -25.439 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.071 3.929 6 H 0.070 0.930 7 N -0.392 5.392 8 C -0.451 4.451 9 H 0.089 0.911 10 C -0.300 4.300 11 N -0.630 5.630 12 Si 0.955 3.045 13 H -0.192 1.192 14 H -0.223 1.223 15 H -0.221 1.221 16 C -0.182 4.182 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.305 3.695 20 O -0.459 6.459 21 C -0.140 4.140 22 C -0.083 4.083 23 C -0.141 4.141 24 C 0.056 3.944 25 F -0.120 7.120 26 C -0.138 4.138 27 C -0.140 4.140 28 C 0.068 3.932 29 F -0.119 7.119 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.187 0.813 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.189 0.811 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.367 9.322 -24.348 26.074 hybrid contribution 0.597 1.322 -0.312 1.484 sum 0.230 10.644 -24.659 26.859 Atomic orbital electron populations 1.22069 0.93406 1.02923 1.02686 1.21018 0.95161 0.96240 0.83245 0.89732 1.22081 1.00300 0.96139 0.97698 1.20370 0.96861 0.89778 0.85854 0.93034 1.42714 1.37446 1.29757 1.29294 1.20402 1.12124 1.03122 1.09460 0.91139 1.27131 0.99859 1.07387 0.95611 1.70933 1.24266 1.24789 1.42974 0.82580 0.74470 0.71894 0.75515 1.19227 1.22255 1.22070 1.22443 1.00150 1.00198 0.95417 1.21939 1.02540 0.77894 0.98690 1.48274 1.55038 1.10035 1.19929 1.20884 0.76964 0.87122 0.84491 1.90680 1.58686 1.16932 1.79595 1.20751 1.03237 0.97748 0.92285 1.19278 0.93256 0.98522 0.97236 1.21054 0.93491 0.99921 0.99658 1.17817 0.77113 0.99523 0.99898 1.91507 1.29197 1.95628 1.95713 1.21282 0.93420 0.99605 0.99474 1.21251 0.94569 0.98578 0.99651 1.17782 0.77001 0.99053 0.99366 1.91487 1.29328 1.95448 1.95655 0.91668 0.90884 0.91894 0.91435 0.93309 0.81316 0.94632 0.93450 0.91514 0.86736 0.89619 0.84676 0.85041 0.82837 0.81070 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.04 71.98 0.65 -3.00 16 2 C 0.15 4.08 3.20 44.98 0.14 4.22 16 3 H 0.08 2.57 7.00 -2.39 -0.02 2.56 16 4 C -0.12 -4.03 5.03 30.67 0.15 -3.87 16 5 C 0.18 6.57 2.53 45.02 0.11 6.68 16 6 H 0.05 1.91 6.44 -2.39 -0.02 1.90 16 7 N -0.75 -36.46 5.12 -322.81 -1.65 -38.11 16 8 C -0.32 -17.23 9.93 84.03 0.83 -16.40 16 9 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 10 C -0.11 -6.22 5.50 84.86 0.47 -5.75 16 11 N -0.98 -61.16 13.70 21.65 0.30 -60.86 16 12 Si 1.13 51.12 29.92 68.60 2.05 53.17 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 14 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 16 C -0.14 -4.31 5.66 30.67 0.17 -4.13 16 17 C 0.11 2.37 5.93 86.36 0.51 2.88 16 18 N -0.60 -14.92 2.68 -795.03 -2.13 -17.05 16 19 C 0.52 13.23 7.69 87.66 0.67 13.91 16 20 O -0.58 -19.34 15.37 -3.02 -0.05 -19.39 16 21 C -0.10 -1.76 3.90 29.10 0.11 -1.65 16 22 C -0.08 -1.59 4.42 -19.83 -0.09 -1.67 16 23 C -0.12 -2.26 9.65 22.31 0.22 -2.04 16 24 C 0.08 1.36 7.30 22.37 0.16 1.53 16 25 F -0.14 -2.77 17.27 44.97 0.78 -1.99 16 26 C -0.12 -1.67 10.02 22.31 0.22 -1.45 16 27 C -0.12 -1.81 10.02 22.31 0.22 -1.59 16 28 C 0.09 1.72 7.14 22.37 0.16 1.88 16 29 F -0.14 -3.06 16.65 44.97 0.75 -2.31 16 30 H 0.06 1.56 5.75 -2.39 -0.01 1.54 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.36 18.55 6.63 -92.71 -0.61 17.94 16 36 H 0.24 15.17 6.78 -92.70 -0.63 14.54 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.11 1.64 5.93 -2.39 -0.01 1.63 16 40 H 0.09 1.63 7.51 -2.39 -0.02 1.61 16 41 H 0.14 1.71 7.55 -2.39 -0.02 1.70 16 42 H 0.13 1.72 7.74 -2.39 -0.02 1.70 16 43 H 0.15 2.42 8.04 -2.91 -0.02 2.39 16 44 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 45 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -72.79 371.13 5.33 -67.46 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.55 Total: 29.56 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.73 Total: -10.46 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.49 Total: -116.03 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.53 Total: -4.31 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -72.79 5.33 -67.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.310 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds