Wall clock time and date at job start Tue Mar 31 2020 21:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36936 * 120.00435 * 205.07087 * 7 5 4 9 9 H 1.08002 * 119.99750 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00419 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99980 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47298 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.47468 * 60.00141 * 12 10 8 15 15 H 1.48494 * 109.47343 * 300.00045 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53198 * 109.31307 * 61.36727 * 16 5 4 18 18 N 1.46925 * 109.58312 * 239.71934 * 2 1 3 19 19 C 1.34771 * 120.63504 * 6.58345 * 18 2 1 20 20 O 1.21286 * 120.00063 * 354.96756 * 19 18 2 21 21 C 1.50699 * 119.99996 * 174.97422 * 19 18 2 22 22 C 1.50706 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38256 * 119.96507 * 269.72677 * 22 21 19 24 24 C 1.38213 * 120.06550 * 179.72641 * 23 22 21 25 25 C 1.38405 * 120.00376 * 0.54793 * 24 23 22 26 26 F 1.35103 * 120.03923 * 179.75268 * 25 24 23 27 27 C 1.38648 * 119.92712 * 359.72588 * 25 24 23 28 28 F 1.35102 * 120.03372 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96014 * 90.00066 * 22 21 19 30 30 H 1.09002 * 109.47195 * 175.94012 * 1 2 3 31 31 H 1.08998 * 109.47244 * 295.94506 * 1 2 3 32 32 H 1.08998 * 109.47145 * 55.94567 * 1 2 3 33 33 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 34 34 H 1.09000 * 109.49602 * 294.37202 * 4 2 1 35 35 H 0.97005 * 120.00108 * 25.06677 * 7 5 4 36 36 H 0.97000 * 120.00324 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 38 38 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 39 39 H 1.08994 * 109.58912 * 65.14916 * 17 16 5 40 40 H 1.08993 * 109.58291 * 185.43592 * 17 16 5 41 41 H 1.08996 * 109.47454 * 299.99875 * 21 19 18 42 42 H 1.09004 * 109.47207 * 59.99882 * 21 19 18 43 43 H 1.07996 * 119.96615 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.99403 * 180.27556 * 24 23 22 45 45 H 1.07997 * 120.00240 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3493 -1.3012 2.7965 9 1 5.9949 -0.6359 2.2426 10 6 5.8210 -1.9358 3.9373 11 7 5.0340 -2.7462 4.6127 12 14 7.5728 -1.6395 4.5141 13 1 7.8283 -2.4279 5.7465 14 1 7.7613 -0.1951 4.8032 15 1 8.5215 -2.0596 3.4517 16 6 3.9569 -1.6656 -0.0657 17 6 3.4651 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1673 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9948 21 6 1.6966 -1.7167 -3.4257 22 6 0.5438 -2.0824 -4.3250 23 6 -0.0288 -3.3378 -4.2377 24 6 -1.0898 -3.6735 -5.0574 25 6 -1.5727 -2.7565 -5.9748 26 9 -2.6065 -3.0856 -6.7799 27 6 -0.9948 -1.4995 -6.0662 28 9 -1.4648 -0.6026 -6.9605 29 6 0.0639 -1.1644 -5.2400 30 1 -0.3634 -1.0251 -0.0728 31 1 -0.3633 0.4496 0.9241 32 1 -0.3633 0.5755 -0.8514 33 1 1.6030 -1.7269 1.2891 34 1 1.7660 -0.1695 2.1366 35 1 3.4852 -2.1161 2.8711 36 1 4.1244 -2.9004 4.3130 37 1 5.0412 -1.7694 -0.1060 38 1 3.4988 -2.6530 -0.0084 39 1 3.9903 0.0039 -1.4317 40 1 3.6541 -1.5678 -2.1994 41 1 2.3409 -0.9994 -3.9340 42 1 2.2687 -2.6131 -3.1863 43 1 0.3507 -4.0555 -3.5254 44 1 -1.5391 -4.6529 -4.9851 45 1 0.5152 -0.1858 -5.3105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:52 Heat of formation + Delta-G solvation = -77.452850 kcal Electronic energy + Delta-G solvation = -29117.938472 eV Core-core repulsion = 24772.008474 eV Total energy + Delta-G solvation = -4345.929998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.73306 -48.81047 -40.74497 -39.26350 -37.45442 -34.79756 -33.69086 -32.17021 -32.06029 -31.12564 -29.22409 -27.72547 -26.91901 -24.17005 -23.62475 -23.08775 -22.84134 -21.49864 -20.33938 -19.06334 -18.19678 -17.52320 -17.35759 -17.26183 -16.90573 -16.52031 -16.05086 -15.54709 -15.22386 -14.89745 -14.86519 -14.72088 -14.29514 -14.20787 -13.95915 -13.63930 -13.60694 -13.47373 -13.30495 -12.85362 -12.39246 -12.34453 -12.22508 -12.10097 -11.98910 -11.70805 -11.59035 -11.47328 -10.90474 -10.89452 -10.63327 -10.51159 -10.15073 -10.02945 -9.43131 -9.27099 -9.14815 -8.97887 -8.86460 -8.52198 -7.11690 -6.16080 -3.16975 0.55647 0.67171 2.53583 2.79049 3.15560 3.46446 3.46888 3.50046 3.67839 3.98580 4.12619 4.23652 4.45918 4.60030 4.62454 4.72044 4.87549 4.95974 5.04154 5.10590 5.16348 5.22681 5.35479 5.39044 5.44956 5.47252 5.54732 5.57445 5.66137 5.69947 5.78544 5.90496 5.97976 6.00681 6.07834 6.21966 6.31555 6.33659 6.38514 6.41238 6.63475 6.76520 6.90127 7.41283 7.73400 8.13744 8.69277 9.15664 10.02181 10.17062 11.32032 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.002147 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.193553 B =13037.431187 C =13222.405847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.048 0.952 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.064 0.936 10 C -0.045 4.045 11 N -0.943 5.943 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.515 3.485 20 O -0.530 6.530 21 C -0.108 4.108 22 C -0.041 4.041 23 C -0.085 4.085 24 C -0.122 4.122 25 C 0.063 3.937 26 F -0.131 7.131 27 C 0.069 3.931 28 F -0.130 7.130 29 C -0.112 4.112 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.367 0.633 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 1.733 -21.321 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.910 3.090 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.303 3.697 20 O -0.408 6.408 21 C -0.147 4.147 22 C -0.042 4.042 23 C -0.103 4.103 24 C -0.141 4.141 25 C 0.043 3.957 26 F -0.110 7.110 27 C 0.048 3.952 28 F -0.109 7.109 29 C -0.131 4.131 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.200 0.800 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.332 1.593 -20.196 21.906 hybrid contribution -1.381 0.296 -1.359 1.960 sum -9.713 1.889 -21.556 23.718 Atomic orbital electron populations 1.22195 0.92745 1.03685 1.00429 1.21306 0.95455 0.94996 0.83749 0.91135 1.22310 0.97533 1.00887 0.96759 1.20095 0.90759 0.94968 0.86785 0.93359 1.42442 1.13089 1.54647 1.27522 1.20011 0.89618 1.26299 1.10405 0.91765 1.25772 1.06270 0.97547 0.94645 1.70884 1.08177 1.38275 1.41435 0.83255 0.74110 0.75506 0.76156 1.21037 1.22256 1.22259 1.22656 1.01828 0.99884 0.94814 1.21886 0.79493 1.00702 0.99645 1.48219 1.07655 1.57535 1.20208 1.20313 0.86573 0.78503 0.84351 1.90788 1.15428 1.55327 1.79261 1.20817 0.96679 1.03527 0.93720 1.19211 0.96646 0.93314 0.94998 1.20972 0.94905 0.96386 0.98039 1.21048 0.97842 0.99820 0.95409 1.17693 0.89516 0.93653 0.94826 1.91525 1.55458 1.92695 1.71288 1.17595 0.97519 0.86853 0.93192 1.91529 1.87634 1.66254 1.65459 1.20893 0.95768 1.00934 0.95468 0.91102 0.93960 0.91407 0.91909 0.90760 0.80022 0.93354 0.90516 0.92305 0.91314 0.90307 0.87491 0.87234 0.84209 0.83584 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.59 37.16 0.28 -1.52 16 2 C 0.15 1.98 3.49 -67.60 -0.24 1.74 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 N -0.74 -17.42 5.12 -53.39 -0.27 -17.70 16 8 C -0.33 -8.90 9.93 -15.06 -0.15 -9.05 16 9 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 11 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 12 Si 1.08 25.10 29.92 -169.99 -5.09 20.01 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 16 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 17 C 0.11 1.16 6.32 -3.70 -0.02 1.13 16 18 N -0.60 -7.23 2.97 -165.22 -0.49 -7.73 16 19 C 0.51 6.00 7.60 -10.99 -0.08 5.91 16 20 O -0.53 -7.69 11.43 5.55 0.06 -7.62 16 21 C -0.11 -0.85 4.23 -29.03 -0.12 -0.97 16 22 C -0.04 -0.36 4.37 -104.62 -0.46 -0.82 16 23 C -0.08 -0.71 9.70 -39.58 -0.38 -1.09 16 24 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 25 C 0.06 0.66 7.31 -39.37 -0.29 0.37 16 26 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 27 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16 28 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 29 C -0.11 -1.04 9.68 -39.53 -0.38 -1.42 16 30 H 0.07 1.07 6.73 -51.93 -0.35 0.72 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.96 6.77 -51.93 -0.35 0.60 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.37 9.13 6.63 -40.82 -0.27 8.86 16 36 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.63 5.97 -51.93 -0.31 0.32 16 41 H 0.11 0.61 8.05 -51.93 -0.42 0.20 16 42 H 0.11 0.68 7.42 -51.93 -0.39 0.30 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -32.29 370.53 -8.67 -40.96 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.22 Total: 6.74 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.09 Total: -9.61 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.00 Total: -53.15 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.06 Total: -7.62 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.29 -8.67 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.491 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds