Wall clock time and date at job start Tue Mar 31 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58304 * 2 1 4 4 C 1.53188 * 109.58471 * 120.42968 * 2 1 3 5 5 C 1.53042 * 109.31142 * 174.42135 * 4 2 1 6 6 H 1.09007 * 109.44903 * 58.64963 * 5 4 2 7 7 N 1.46494 * 109.46283 * 178.61274 * 5 4 2 8 8 C 1.36936 * 120.00435 * 205.07087 * 7 5 4 9 9 H 1.08002 * 119.99750 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00419 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99980 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47298 * 179.97438 * 12 10 8 14 14 H 1.48504 * 109.47468 * 60.00141 * 12 10 8 15 15 H 1.48494 * 109.47343 * 300.00045 * 12 10 8 16 16 C 1.53040 * 109.53776 * 298.63508 * 5 4 2 17 17 C 1.53198 * 109.31307 * 61.36727 * 16 5 4 18 18 N 1.46925 * 109.58312 * 239.71934 * 2 1 3 19 19 C 1.34771 * 120.63504 * 6.58345 * 18 2 1 20 20 O 1.21286 * 120.00063 * 354.96756 * 19 18 2 21 21 C 1.50699 * 119.99996 * 174.97422 * 19 18 2 22 22 C 1.50706 * 109.47015 * 179.97438 * 21 19 18 23 23 C 1.38256 * 119.96507 * 269.72677 * 22 21 19 24 24 C 1.38213 * 120.06550 * 179.72641 * 23 22 21 25 25 C 1.38405 * 120.00376 * 0.54793 * 24 23 22 26 26 F 1.35103 * 120.03923 * 179.75268 * 25 24 23 27 27 C 1.38648 * 119.92712 * 359.72588 * 25 24 23 28 28 F 1.35102 * 120.03372 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96014 * 90.00066 * 22 21 19 30 30 H 1.09002 * 109.47195 * 175.94012 * 1 2 3 31 31 H 1.08998 * 109.47244 * 295.94506 * 1 2 3 32 32 H 1.08998 * 109.47145 * 55.94567 * 1 2 3 33 33 H 1.08991 * 109.50117 * 54.47404 * 4 2 1 34 34 H 1.09000 * 109.49602 * 294.37202 * 4 2 1 35 35 H 0.97005 * 120.00108 * 25.06677 * 7 5 4 36 36 H 0.97000 * 120.00324 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.49531 * 181.31329 * 16 5 4 38 38 H 1.08992 * 109.49838 * 301.37974 * 16 5 4 39 39 H 1.08994 * 109.58912 * 65.14916 * 17 16 5 40 40 H 1.08993 * 109.58291 * 185.43592 * 17 16 5 41 41 H 1.08996 * 109.47454 * 299.99875 * 21 19 18 42 42 H 1.09004 * 109.47207 * 59.99882 * 21 19 18 43 43 H 1.07996 * 119.96615 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.99403 * 180.27556 * 24 23 22 45 45 H 1.07997 * 120.00240 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 1 4.0060 0.1460 1.0994 7 7 4.0652 -1.5188 2.3733 8 6 5.3493 -1.3012 2.7965 9 1 5.9949 -0.6359 2.2426 10 6 5.8210 -1.9358 3.9373 11 7 5.0340 -2.7462 4.6127 12 14 7.5728 -1.6395 4.5141 13 1 7.8283 -2.4279 5.7465 14 1 7.7613 -0.1951 4.8032 15 1 8.5215 -2.0596 3.4517 16 6 3.9569 -1.6656 -0.0657 17 6 3.4651 -0.9452 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1673 -1.1041 -2.1546 20 8 -0.0282 -0.9767 -1.9948 21 6 1.6966 -1.7167 -3.4257 22 6 0.5438 -2.0824 -4.3250 23 6 -0.0288 -3.3378 -4.2377 24 6 -1.0898 -3.6735 -5.0574 25 6 -1.5727 -2.7565 -5.9748 26 9 -2.6065 -3.0856 -6.7799 27 6 -0.9948 -1.4995 -6.0662 28 9 -1.4648 -0.6026 -6.9605 29 6 0.0639 -1.1644 -5.2400 30 1 -0.3634 -1.0251 -0.0728 31 1 -0.3633 0.4496 0.9241 32 1 -0.3633 0.5755 -0.8514 33 1 1.6030 -1.7269 1.2891 34 1 1.7660 -0.1695 2.1366 35 1 3.4852 -2.1161 2.8711 36 1 4.1244 -2.9004 4.3130 37 1 5.0412 -1.7694 -0.1060 38 1 3.4988 -2.6530 -0.0084 39 1 3.9903 0.0039 -1.4317 40 1 3.6541 -1.5678 -2.1994 41 1 2.3409 -0.9994 -3.9340 42 1 2.2687 -2.6131 -3.1863 43 1 0.3507 -4.0555 -3.5254 44 1 -1.5391 -4.6529 -4.9851 45 1 0.5152 -0.1858 -5.3105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:51 Heat of formation + Delta-G solvation = -95.571994 kcal Electronic energy + Delta-G solvation = -29118.724177 eV Core-core repulsion = 24772.008474 eV Total energy + Delta-G solvation = -4346.715703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.53737 -49.62393 -41.68293 -40.03677 -38.64420 -36.40174 -34.60369 -33.79559 -32.95784 -31.80626 -30.79031 -28.70431 -27.99235 -25.82200 -24.54720 -24.30691 -23.73819 -22.49256 -21.64484 -20.08833 -19.29720 -18.95875 -18.24939 -18.01645 -17.81320 -17.33950 -17.03947 -16.85353 -16.27038 -16.05354 -15.88359 -15.63233 -15.49331 -15.36591 -15.06756 -14.94461 -14.67329 -14.51654 -14.36194 -13.86692 -13.43553 -13.35085 -13.22406 -12.99781 -12.88867 -12.84738 -12.67626 -12.51082 -12.37868 -12.25797 -12.05232 -11.92846 -11.86090 -11.59503 -11.15697 -10.86296 -10.17939 -10.03521 -9.63915 -9.56113 -9.09628 -8.35243 -5.29711 -0.16136 0.00539 1.60540 1.67055 1.70133 1.85946 1.93974 2.40584 2.73842 2.76807 3.26158 3.42935 3.45553 3.57536 3.60800 3.65759 3.90211 3.99872 4.01433 4.08708 4.10961 4.23507 4.31145 4.37093 4.55780 4.57036 4.58803 4.65385 4.72644 4.77042 4.81607 4.85679 4.89658 4.98815 5.01671 5.03489 5.12914 5.23977 5.33266 5.39643 5.49314 5.63683 5.69280 5.72360 6.50253 6.52130 7.12173 7.23993 8.02119 8.15133 9.16508 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.002147 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.193553 B =13037.431187 C =13222.405847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.153 3.847 3 H 0.082 0.918 4 C -0.124 4.124 5 C 0.177 3.823 6 H 0.044 0.956 7 N -0.751 5.751 8 C -0.322 4.322 9 H 0.070 0.930 10 C -0.109 4.109 11 N -0.980 5.980 12 Si 1.126 2.874 13 H -0.298 1.298 14 H -0.279 1.279 15 H -0.275 1.275 16 C -0.141 4.141 17 C 0.115 3.885 18 N -0.605 5.605 19 C 0.512 3.488 20 O -0.562 6.562 21 C -0.101 4.101 22 C -0.045 4.045 23 C -0.085 4.085 24 C -0.121 4.121 25 C 0.044 3.956 26 F -0.142 7.142 27 C 0.047 3.953 28 F -0.142 7.142 29 C -0.112 4.112 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.356 0.644 36 H 0.243 0.757 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 2.194 -23.053 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.069 3.931 6 H 0.062 0.938 7 N -0.393 5.393 8 C -0.453 4.453 9 H 0.088 0.912 10 C -0.300 4.300 11 N -0.628 5.628 12 Si 0.951 3.049 13 H -0.225 1.225 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.182 4.182 17 C -0.008 4.008 18 N -0.338 5.338 19 C 0.302 3.698 20 O -0.442 6.442 21 C -0.140 4.140 22 C -0.046 4.046 23 C -0.103 4.103 24 C -0.139 4.139 25 C 0.024 3.976 26 F -0.121 7.121 27 C 0.027 3.973 28 F -0.121 7.121 29 C -0.131 4.131 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.187 0.813 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.178 0.822 44 H 0.184 0.816 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.900 2.085 -22.004 23.154 hybrid contribution -1.904 0.176 -0.844 2.090 sum -8.804 2.260 -22.847 24.589 Atomic orbital electron populations 1.22037 0.92814 1.02492 1.00457 1.21165 0.95222 0.95304 0.83362 0.90030 1.22152 0.95814 1.00400 0.97913 1.20379 0.92026 0.94617 0.86116 0.93810 1.42704 1.12211 1.54961 1.29380 1.20357 0.90694 1.24687 1.09612 0.91160 1.27142 1.09426 0.97809 0.95600 1.70996 1.08111 1.40827 1.42900 0.82649 0.70595 0.76024 0.75657 1.22456 1.20511 1.20053 1.22425 1.01024 0.99247 0.95456 1.21934 0.78591 1.01736 0.98533 1.48257 1.08255 1.57489 1.19810 1.20948 0.86063 0.77662 0.85112 1.90789 1.16919 1.56434 1.80041 1.20885 0.96630 1.05091 0.91401 1.19406 0.96980 0.93334 0.94872 1.21299 0.94398 0.96764 0.97852 1.21313 0.97750 1.00296 0.94578 1.18001 0.89780 0.94271 0.95585 1.91490 1.56051 1.92804 1.71757 1.17882 0.98566 0.87003 0.93881 1.91490 1.87935 1.66664 1.66007 1.21103 0.95203 1.01743 0.95064 0.92827 0.93582 0.91717 0.93140 0.91952 0.81284 0.94697 0.91736 0.93395 0.89709 0.86161 0.84414 0.84715 0.82214 0.81608 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 7.59 71.98 0.55 -2.61 16 2 C 0.15 3.84 3.49 44.97 0.16 3.99 16 3 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.12 -3.84 4.84 30.67 0.15 -3.69 16 5 C 0.18 6.28 2.73 45.02 0.12 6.40 16 6 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 7 N -0.75 -35.92 5.12 -322.82 -1.65 -37.57 16 8 C -0.32 -17.18 9.93 84.03 0.83 -16.35 16 9 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 10 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 11 N -0.98 -60.53 13.70 21.65 0.30 -60.24 16 12 Si 1.13 50.29 29.92 68.60 2.05 52.34 16 13 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 14 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 C -0.14 -4.00 5.66 30.67 0.17 -3.82 16 17 C 0.11 2.03 6.32 86.36 0.55 2.57 16 18 N -0.60 -12.62 2.97 -795.03 -2.36 -14.99 16 19 C 0.51 10.25 7.60 87.66 0.67 10.92 16 20 O -0.56 -15.18 11.43 -3.05 -0.03 -15.22 16 21 C -0.10 -1.12 4.23 29.10 0.12 -1.00 16 22 C -0.05 -0.66 4.37 -19.86 -0.09 -0.74 16 23 C -0.09 -1.18 9.70 22.27 0.22 -0.96 16 24 C -0.12 -1.85 10.02 22.30 0.22 -1.62 16 25 C 0.04 0.88 7.31 22.41 0.16 1.04 16 26 F -0.14 -3.23 17.18 44.97 0.77 -2.45 16 27 C 0.05 0.96 7.31 22.41 0.16 1.12 16 28 F -0.14 -3.30 17.18 44.97 0.77 -2.53 16 29 C -0.11 -1.85 9.68 22.31 0.22 -1.63 16 30 H 0.05 1.59 6.73 -2.39 -0.02 1.57 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.75 6.77 -2.39 -0.02 1.73 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.36 18.29 6.63 -92.70 -0.61 17.67 16 36 H 0.24 14.98 6.77 -92.71 -0.63 14.35 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.21 5.97 -2.39 -0.01 1.20 16 41 H 0.14 0.76 8.05 -2.39 -0.02 0.74 16 42 H 0.14 0.90 7.42 -2.38 -0.02 0.88 16 43 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.38 370.53 5.07 -67.31 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.55 Total: 25.42 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.68 Total: -12.07 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.72 Total: -112.80 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.03 Total: -15.22 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.55 Total: -4.98 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.05 Total: 52.34 kcal Total: -72.38 5.07 -67.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.263 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds