Wall clock time and date at job start Tue Mar 31 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.69658 * 2 1 4 4 C 1.53190 * 109.58540 * 239.65342 * 2 1 3 5 5 C 1.53048 * 109.31109 * 185.57347 * 4 2 1 6 6 H 1.08993 * 109.44816 * 301.34724 * 5 4 2 7 7 N 1.46497 * 109.45968 * 181.38182 * 5 4 2 8 8 C 1.36933 * 120.00099 * 154.92990 * 7 5 4 9 9 H 1.08002 * 119.99853 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00140 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99766 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00105 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47045 * 90.00273 * 12 10 8 14 14 H 1.48496 * 109.47237 * 210.00660 * 12 10 8 15 15 H 1.48503 * 109.47128 * 330.00867 * 12 10 8 16 16 C 1.53039 * 109.53636 * 61.36107 * 5 4 2 17 17 C 1.53192 * 109.34354 * 298.61953 * 16 5 4 18 18 N 1.46916 * 109.59110 * 120.35739 * 2 1 3 19 19 C 1.34780 * 120.63343 * 353.41818 * 18 2 1 20 20 O 1.21282 * 119.99595 * 5.07306 * 19 18 2 21 21 C 1.50693 * 120.00319 * 185.07039 * 19 18 2 22 22 C 1.50700 * 109.47124 * 180.02562 * 21 19 18 23 23 C 1.38260 * 119.96630 * 269.73026 * 22 21 19 24 24 C 1.38222 * 120.06870 * 179.72604 * 23 22 21 25 25 C 1.38408 * 119.99868 * 0.54303 * 24 23 22 26 26 F 1.35099 * 120.03377 * 179.74919 * 25 24 23 27 27 C 1.38646 * 119.93133 * 359.73102 * 25 24 23 28 28 F 1.35099 * 120.03559 * 180.02562 * 27 25 24 29 29 C 1.38212 * 119.96420 * 90.00381 * 22 21 19 30 30 H 1.09000 * 109.46741 * 183.92922 * 1 2 3 31 31 H 1.08996 * 109.47126 * 303.92169 * 1 2 3 32 32 H 1.09001 * 109.47404 * 63.92933 * 1 2 3 33 33 H 1.08999 * 109.50567 * 65.62082 * 4 2 1 34 34 H 1.08998 * 109.52332 * 305.53416 * 4 2 1 35 35 H 0.97006 * 119.99891 * 334.93411 * 7 5 4 36 36 H 0.97007 * 119.99337 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.49849 * 58.58741 * 16 5 4 38 38 H 1.09000 * 109.49576 * 178.64930 * 16 5 4 39 39 H 1.08998 * 109.59036 * 174.44031 * 17 16 5 40 40 H 1.09006 * 109.58334 * 294.86618 * 17 16 5 41 41 H 1.08995 * 109.47682 * 300.00143 * 21 19 18 42 42 H 1.09005 * 109.47065 * 60.00725 * 21 19 18 43 43 H 1.07999 * 119.96319 * 0.02562 * 23 22 21 44 44 H 1.07998 * 119.99803 * 180.27142 * 24 23 22 45 45 H 1.07997 * 120.00058 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7292 -1.2455 5 6 3.5676 -0.8477 -1.1703 6 1 4.0059 0.1477 -1.0993 7 7 4.0653 -1.5153 -2.3756 8 6 5.3492 -1.2971 -2.7985 9 1 5.9952 -0.6331 -2.2432 10 6 5.8210 -1.9302 -3.9402 11 7 5.0339 -2.7398 -4.6166 12 14 7.5728 -1.6330 -4.5167 13 1 8.4760 -2.6318 -3.8908 14 1 7.6368 -1.7653 -5.9944 15 1 7.9982 -0.2658 -4.1232 16 6 3.9570 -1.6655 0.0633 17 6 3.4658 -0.9472 1.3240 18 7 2.0227 -0.6995 1.1943 19 6 1.1676 -1.1070 2.1531 20 8 -0.0280 -0.9802 1.9932 21 6 1.6969 -1.7203 3.4238 22 6 0.5442 -2.0875 4.3224 23 6 0.0669 -1.1723 5.2423 24 6 -0.9938 -1.5048 6.0637 25 6 -1.5721 -2.7591 5.9736 26 9 -2.6056 -3.0866 6.7796 27 6 -1.0898 -3.6789 5.0551 28 9 -1.6530 -4.9036 4.9650 29 6 -0.0310 -3.3408 4.2301 30 1 -0.3633 -1.0253 0.0704 31 1 -0.3633 0.5735 0.8527 32 1 -0.3634 0.4516 -0.9231 33 1 1.7660 -0.1666 -2.1369 34 1 1.6031 -1.7251 -1.2920 35 1 3.4852 -2.1120 -2.8741 36 1 5.3636 -3.1818 -5.4147 37 1 3.4985 -2.6526 0.0050 38 1 5.0413 -1.7698 0.1031 39 1 3.6531 -1.5722 2.1971 40 1 3.9911 0.0018 1.4320 41 1 2.2696 -2.6161 3.1838 42 1 2.3406 -1.0029 3.9328 43 1 0.5203 -0.1948 5.3158 44 1 -1.3686 -0.7875 6.7788 45 1 0.3458 -4.0566 3.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:55 Heat of formation + Delta-G solvation = -77.719999 kcal Electronic energy + Delta-G solvation = -29102.809685 eV Core-core repulsion = 24756.868102 eV Total energy + Delta-G solvation = -4345.941582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.69732 -48.77393 -40.69005 -39.22353 -37.36867 -34.55843 -33.63516 -32.05295 -31.96428 -31.09923 -29.39291 -27.74115 -26.90236 -24.34840 -23.60487 -22.97956 -22.79971 -21.43359 -20.17875 -19.01444 -18.17065 -17.48855 -17.24743 -17.17039 -16.82279 -16.47894 -15.93590 -15.54065 -15.18627 -14.88712 -14.78987 -14.56993 -14.28102 -14.10345 -13.77483 -13.75073 -13.64338 -13.31721 -13.08852 -12.69058 -12.41724 -12.25597 -12.17952 -12.05021 -11.93362 -11.62332 -11.57415 -11.39730 -10.95633 -10.87502 -10.82072 -10.49624 -10.28656 -9.89809 -9.75709 -9.39606 -9.12192 -8.96464 -8.83066 -8.46747 -7.03475 -5.82533 -3.12096 0.58384 0.70074 2.58525 2.83313 3.19579 3.38546 3.43769 3.45862 3.49834 4.02958 4.15770 4.24914 4.50096 4.53136 4.63859 4.75958 4.96075 4.98538 5.11716 5.14419 5.24378 5.30026 5.39689 5.43917 5.49501 5.51348 5.55948 5.60221 5.67130 5.77201 5.86323 5.97550 6.00665 6.09126 6.21445 6.30636 6.40064 6.42977 6.43807 6.49222 6.71070 6.84889 6.98882 7.46907 7.63049 8.18984 8.35565 9.46819 10.04158 10.38567 11.39906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002204 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.845986 B =12699.336241 C =12965.911009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.515 3.485 20 O -0.531 6.531 21 C -0.108 4.108 22 C -0.040 4.040 23 C -0.086 4.086 24 C -0.124 4.124 25 C 0.063 3.937 26 F -0.131 7.131 27 C 0.070 3.930 28 F -0.129 7.129 29 C -0.111 4.111 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 3.915 22.120 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.302 3.698 20 O -0.409 6.409 21 C -0.148 4.148 22 C -0.041 4.041 23 C -0.104 4.104 24 C -0.142 4.142 25 C 0.042 3.958 26 F -0.110 7.110 27 C 0.050 3.950 28 F -0.108 7.108 29 C -0.130 4.130 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.532 3.985 21.978 24.286 hybrid contribution 0.693 -0.523 -0.489 0.997 sum -8.839 3.462 21.489 23.493 Atomic orbital electron populations 1.22191 0.92817 1.03669 1.00369 1.21321 0.95391 0.94969 0.83856 0.91166 1.22303 0.97532 1.00992 0.96603 1.20155 0.90917 0.94939 0.87114 0.93476 1.42434 1.12963 1.54324 1.26692 1.19217 0.89106 1.22298 1.06582 0.91172 1.24760 0.98167 0.99805 0.98179 1.69666 1.35372 1.33429 1.19495 0.86207 0.84556 0.77655 0.77854 1.21724 1.21777 1.20754 1.22686 1.01768 1.00062 0.94796 1.21914 0.79473 1.00647 0.99713 1.48241 1.07664 1.57423 1.20262 1.20301 0.86579 0.78522 0.84359 1.90787 1.15437 1.55383 1.79259 1.20818 0.96652 1.03479 0.93815 1.19216 0.96564 0.92743 0.95591 1.20930 0.95585 0.99527 0.94397 1.21024 0.97229 0.94501 1.01484 1.17692 0.89708 0.94837 0.93523 1.91522 1.55522 1.92934 1.71019 1.17611 0.96670 0.81403 0.99336 1.91534 1.83956 1.39867 1.95434 1.20945 0.95132 0.98025 0.98882 0.91119 0.91485 0.93960 0.90668 0.91801 0.78253 0.93457 0.92167 0.90567 0.90402 0.91329 0.87390 0.87352 0.84323 0.83672 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.60 37.16 0.28 -1.53 16 2 C 0.15 1.97 3.49 -67.60 -0.24 1.73 16 3 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 4 C -0.14 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16 6 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 7 N -0.72 -17.18 5.12 -53.39 -0.27 -17.46 16 8 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 12 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 17 C 0.11 1.14 6.33 -3.67 -0.02 1.12 16 18 N -0.60 -7.20 2.97 -165.17 -0.49 -7.70 16 19 C 0.51 6.00 7.60 -10.99 -0.08 5.91 16 20 O -0.53 -7.71 11.43 5.56 0.06 -7.65 16 21 C -0.11 -0.85 4.23 -29.04 -0.12 -0.97 16 22 C -0.04 -0.36 4.37 -104.62 -0.46 -0.82 16 23 C -0.09 -0.67 9.70 -39.58 -0.38 -1.06 16 24 C -0.12 -1.01 10.02 -39.52 -0.40 -1.40 16 25 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 26 F -0.13 -1.49 17.18 2.25 0.04 -1.45 16 27 C 0.07 0.77 7.31 -39.37 -0.29 0.49 16 28 F -0.13 -1.58 17.18 2.25 0.04 -1.55 16 29 C -0.11 -1.09 9.68 -39.53 -0.38 -1.48 16 30 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 31 H 0.07 0.93 6.76 -51.93 -0.35 0.58 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.38 9.89 7.80 -40.82 -0.32 9.58 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.08 0.62 5.97 -51.93 -0.31 0.31 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 0.71 7.42 -51.93 -0.39 0.33 16 42 H 0.11 0.58 8.05 -51.93 -0.42 0.16 16 43 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -31.42 372.23 -8.73 -40.15 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.33 Total: 6.44 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.09 Total: -6.28 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.04 Total: -51.94 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.06 Total: -7.65 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.42 -8.73 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.569 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds