Wall clock time and date at job start Tue Mar 31 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.70020 * 2 1 4 4 C 1.52760 * 109.42873 * 120.16680 * 2 1 3 5 5 C 1.53035 * 109.38530 * 65.42611 * 4 2 1 6 6 H 1.08997 * 109.45051 * 301.22415 * 5 4 2 7 7 N 1.46500 * 109.46240 * 181.25997 * 5 4 2 8 8 C 1.36931 * 120.00310 * 154.93201 * 7 5 4 9 9 H 1.08002 * 120.00031 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00293 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00440 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46940 * 89.99687 * 12 10 8 14 14 H 1.48502 * 109.47567 * 209.99778 * 12 10 8 15 15 H 1.48501 * 109.47255 * 330.00344 * 12 10 8 16 16 C 1.53044 * 109.53924 * 61.23682 * 5 4 2 17 17 C 1.53197 * 109.31274 * 298.63416 * 16 5 4 18 18 N 1.46922 * 109.58679 * 239.64632 * 2 1 3 19 19 C 1.34776 * 120.62980 * 113.84417 * 18 2 1 20 20 O 1.21279 * 120.00069 * 359.71983 * 19 18 2 21 21 C 1.50708 * 119.99979 * 179.71982 * 19 18 2 22 22 C 1.50698 * 109.46758 * 179.97438 * 21 19 18 23 23 C 1.38258 * 119.96911 * 270.01855 * 22 21 19 24 24 C 1.38212 * 120.07081 * 179.97438 * 23 22 21 25 25 C 1.38415 * 119.99983 * 0.02562 * 24 23 22 26 26 F 1.35100 * 120.03071 * 180.02562 * 25 24 23 27 27 C 1.38647 * 119.92948 * 359.97438 * 25 24 23 28 28 F 1.35098 * 120.03325 * 179.97438 * 27 25 24 29 29 C 1.38220 * 119.95949 * 90.00503 * 22 21 19 30 30 H 1.08994 * 109.47089 * 180.34959 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.35217 * 1 2 3 32 32 H 1.09005 * 109.46797 * 60.35112 * 1 2 3 33 33 H 1.09003 * 109.56601 * 305.38634 * 4 2 1 34 34 H 1.09000 * 109.37984 * 185.35016 * 4 2 1 35 35 H 0.97000 * 119.99712 * 334.92507 * 7 5 4 36 36 H 0.96994 * 119.99934 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49868 * 178.68826 * 16 5 4 38 38 H 1.08993 * 109.49684 * 58.58702 * 16 5 4 39 39 H 1.08995 * 109.58972 * 294.84888 * 17 16 5 40 40 H 1.08993 * 109.58603 * 174.42059 * 17 16 5 41 41 H 1.08997 * 109.47004 * 60.00203 * 21 19 18 42 42 H 1.08996 * 109.46836 * 300.00015 * 21 19 18 43 43 H 1.08002 * 119.96280 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99909 * 180.28016 * 24 23 22 45 45 H 1.08001 * 120.00268 * 0.03641 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7239 1.2455 5 6 1.6410 -2.2000 1.1726 6 1 0.5565 -2.2809 1.0994 7 7 2.1013 -2.8896 2.3804 8 6 1.4658 -4.0261 2.8043 9 1 0.6249 -4.4138 2.2484 10 6 1.9023 -4.6798 3.9484 11 7 1.2918 -5.7724 4.3556 12 14 3.3572 -4.0095 4.9094 13 1 2.8729 -3.0556 5.9394 14 1 4.0727 -5.1305 5.5703 15 1 4.2825 -3.3095 3.9826 16 6 2.2844 -2.8430 -0.0582 17 6 1.7740 -2.1421 -1.3212 18 7 2.0226 -0.6995 -1.1945 19 6 2.6945 -0.0317 -2.1531 20 8 2.8932 1.1591 -2.0369 21 6 3.1988 -0.7646 -3.3696 22 6 3.9097 0.2032 -4.2801 23 6 3.2037 0.8738 -5.2616 24 6 3.8535 1.7622 -6.0975 25 6 5.2126 1.9810 -5.9529 26 9 5.8482 2.8496 -6.7693 27 6 5.9206 1.3085 -4.9686 28 9 7.2472 1.5200 -4.8259 29 6 5.2669 0.4196 -4.1329 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.5987 -0.2724 2.1350 34 1 3.1239 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 1.5967 -6.2289 5.1552 37 1 2.0200 -3.8998 -0.0967 38 1 3.3678 -2.7405 0.0022 39 1 0.7044 -2.3203 -1.4312 40 1 2.3025 -2.5287 -2.1925 41 1 2.3574 -1.2106 -3.8998 42 1 3.8904 -1.5484 -3.0607 43 1 2.1433 0.7032 -5.3752 44 1 3.3000 2.2888 -6.8609 45 1 5.8174 -0.1051 -3.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:58 Heat of formation + Delta-G solvation = -88.368653 kcal Electronic energy + Delta-G solvation = -29085.563594 eV Core-core repulsion = 24739.160252 eV Total energy + Delta-G solvation = -4346.403343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.72664 -48.80345 -40.63260 -39.28670 -37.65906 -34.76080 -33.41710 -32.17743 -31.89478 -31.13524 -29.92432 -27.82776 -27.42899 -24.31483 -23.63300 -23.04248 -22.70557 -21.47506 -20.45111 -18.61778 -18.19962 -17.66817 -17.51491 -17.27152 -17.09964 -16.54532 -15.85407 -15.41969 -15.21472 -15.06556 -14.83974 -14.67412 -14.29721 -14.14816 -13.96095 -13.83440 -13.54774 -13.43415 -12.99377 -12.96858 -12.65911 -12.36628 -12.22036 -12.08518 -12.06402 -11.87345 -11.61564 -11.47119 -11.09615 -11.01318 -10.90829 -10.61434 -10.27616 -9.92608 -9.79384 -9.65132 -9.39361 -8.99542 -8.93103 -8.63880 -7.35264 -5.84008 -3.20099 0.55121 0.67057 2.52295 2.77860 3.14932 3.32704 3.36051 3.41287 3.46721 3.99570 4.12218 4.21646 4.44027 4.53029 4.60829 4.72371 4.89445 4.92048 5.00139 5.04825 5.10531 5.16333 5.32744 5.36946 5.45746 5.47845 5.48468 5.54330 5.61874 5.64372 5.66862 5.73632 5.92905 5.97069 5.97880 6.12761 6.17900 6.29326 6.32283 6.39908 6.48273 6.73297 6.86812 7.38014 7.90999 8.08870 8.35038 9.13083 9.86039 10.05488 11.34072 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002362 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.698619 B =11849.978751 C =12485.041150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.096 0.904 4 C -0.138 4.138 5 C 0.183 3.817 6 H 0.060 0.940 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.153 4.153 17 C 0.104 3.896 18 N -0.601 5.601 19 C 0.516 3.484 20 O -0.541 6.541 21 C -0.105 4.105 22 C -0.042 4.042 23 C -0.086 4.086 24 C -0.124 4.124 25 C 0.063 3.937 26 F -0.131 7.131 27 C 0.070 3.930 28 F -0.129 7.129 29 C -0.111 4.111 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 12.606 -21.472 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.194 4.194 17 C -0.019 4.019 18 N -0.334 5.334 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.145 4.145 22 C -0.043 4.043 23 C -0.104 4.104 24 C -0.142 4.142 25 C 0.043 3.957 26 F -0.110 7.110 27 C 0.049 3.951 28 F -0.108 7.108 29 C -0.130 4.130 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.656 13.064 -21.372 25.189 hybrid contribution 1.495 0.382 0.750 1.716 sum 4.151 13.446 -20.622 24.966 Atomic orbital electron populations 1.22148 0.94834 1.02918 1.01994 1.21069 0.94177 0.97074 0.83738 0.88626 1.22188 1.01283 0.97359 0.96890 1.20168 0.97422 0.88752 0.86281 0.92181 1.42805 1.37772 1.30534 1.27897 1.19040 1.11311 0.99879 1.07226 0.89186 1.24675 0.98934 0.97229 0.98210 1.69696 1.42819 1.19519 1.25978 0.86568 0.83448 0.78161 0.80401 1.21080 1.21772 1.20377 1.22654 1.01014 1.01002 0.94695 1.21900 1.01336 0.79057 0.99603 1.48263 1.55119 1.09605 1.20406 1.20334 0.77966 0.87466 0.83845 1.90714 1.57428 1.15094 1.78593 1.20760 1.01921 0.97723 0.94061 1.19222 0.92449 0.97144 0.95480 1.20936 1.00400 0.95022 0.94016 1.21030 0.91635 1.00026 1.01539 1.17697 0.91593 0.93900 0.92503 1.91524 1.82040 1.66864 1.70532 1.17605 0.78500 1.00491 0.98456 1.91534 1.30310 1.93803 1.95142 1.20942 0.94865 0.98155 0.99032 0.91495 0.91320 0.92824 0.90433 0.92014 0.80668 0.93016 0.90086 0.92279 0.91041 0.90287 0.87173 0.87213 0.84261 0.83612 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.02 37.16 0.34 -1.46 16 2 C 0.14 1.79 3.19 -67.82 -0.22 1.58 16 3 H 0.10 1.30 7.01 -51.93 -0.36 0.94 16 4 C -0.14 -2.00 4.99 -26.84 -0.13 -2.14 16 5 C 0.18 3.09 2.53 -67.89 -0.17 2.92 16 6 H 0.06 1.05 6.43 -51.93 -0.33 0.71 16 7 N -0.75 -16.43 4.92 -53.39 -0.26 -16.69 16 8 C -0.24 -6.49 10.41 -15.06 -0.16 -6.64 16 9 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 12 Si 0.88 21.49 27.73 -169.99 -4.71 16.78 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 16 C -0.15 -2.19 5.66 -26.61 -0.15 -2.34 16 17 C 0.10 1.08 5.93 -3.71 -0.02 1.05 16 18 N -0.60 -6.88 2.68 -165.47 -0.44 -7.33 16 19 C 0.52 5.97 7.69 -10.98 -0.08 5.89 16 20 O -0.54 -8.20 15.45 5.56 0.09 -8.12 16 21 C -0.11 -0.81 4.18 -29.03 -0.12 -0.93 16 22 C -0.04 -0.37 4.37 -104.62 -0.46 -0.83 16 23 C -0.09 -0.66 9.70 -39.58 -0.38 -1.05 16 24 C -0.12 -1.00 10.02 -39.53 -0.40 -1.39 16 25 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 26 F -0.13 -1.46 17.18 2.25 0.04 -1.43 16 27 C 0.07 0.76 7.31 -39.37 -0.29 0.47 16 28 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 29 C -0.11 -1.08 9.68 -39.52 -0.38 -1.46 16 30 H 0.07 0.77 5.74 -51.93 -0.30 0.47 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 40 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 41 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 42 H 0.11 0.69 7.64 -51.93 -0.40 0.30 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.71 370.54 -8.04 -40.75 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.13 Total: 5.44 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.01 Total: -5.91 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.07 Total: -51.58 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.71 -8.04 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.616 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds