Wall clock time and date at job start Tue Mar 31 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.70020 * 2 1 4 4 C 1.52760 * 109.42873 * 120.16680 * 2 1 3 5 5 C 1.53035 * 109.38530 * 65.42611 * 4 2 1 6 6 H 1.08997 * 109.45051 * 301.22415 * 5 4 2 7 7 N 1.46500 * 109.46240 * 181.25997 * 5 4 2 8 8 C 1.36931 * 120.00310 * 154.93201 * 7 5 4 9 9 H 1.08002 * 120.00031 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00293 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00440 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46940 * 89.99687 * 12 10 8 14 14 H 1.48502 * 109.47567 * 209.99778 * 12 10 8 15 15 H 1.48501 * 109.47255 * 330.00344 * 12 10 8 16 16 C 1.53044 * 109.53924 * 61.23682 * 5 4 2 17 17 C 1.53197 * 109.31274 * 298.63416 * 16 5 4 18 18 N 1.46922 * 109.58679 * 239.64632 * 2 1 3 19 19 C 1.34776 * 120.62980 * 113.84417 * 18 2 1 20 20 O 1.21279 * 120.00069 * 359.71983 * 19 18 2 21 21 C 1.50708 * 119.99979 * 179.71982 * 19 18 2 22 22 C 1.50698 * 109.46758 * 179.97438 * 21 19 18 23 23 C 1.38258 * 119.96911 * 270.01855 * 22 21 19 24 24 C 1.38212 * 120.07081 * 179.97438 * 23 22 21 25 25 C 1.38415 * 119.99983 * 0.02562 * 24 23 22 26 26 F 1.35100 * 120.03071 * 180.02562 * 25 24 23 27 27 C 1.38647 * 119.92948 * 359.97438 * 25 24 23 28 28 F 1.35098 * 120.03325 * 179.97438 * 27 25 24 29 29 C 1.38220 * 119.95949 * 90.00503 * 22 21 19 30 30 H 1.08994 * 109.47089 * 180.34959 * 1 2 3 31 31 H 1.08996 * 109.47135 * 300.35217 * 1 2 3 32 32 H 1.09005 * 109.46797 * 60.35112 * 1 2 3 33 33 H 1.09003 * 109.56601 * 305.38634 * 4 2 1 34 34 H 1.09000 * 109.37984 * 185.35016 * 4 2 1 35 35 H 0.97000 * 119.99712 * 334.92507 * 7 5 4 36 36 H 0.96994 * 119.99934 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49868 * 178.68826 * 16 5 4 38 38 H 1.08993 * 109.49684 * 58.58702 * 16 5 4 39 39 H 1.08995 * 109.58972 * 294.84888 * 17 16 5 40 40 H 1.08993 * 109.58603 * 174.42059 * 17 16 5 41 41 H 1.08997 * 109.47004 * 60.00203 * 21 19 18 42 42 H 1.08996 * 109.46836 * 300.00015 * 21 19 18 43 43 H 1.08002 * 119.96280 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99909 * 180.28016 * 24 23 22 45 45 H 1.08001 * 120.00268 * 0.03641 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0382 -0.7239 1.2455 5 6 1.6410 -2.2000 1.1726 6 1 0.5565 -2.2809 1.0994 7 7 2.1013 -2.8896 2.3804 8 6 1.4658 -4.0261 2.8043 9 1 0.6249 -4.4138 2.2484 10 6 1.9023 -4.6798 3.9484 11 7 1.2918 -5.7724 4.3556 12 14 3.3572 -4.0095 4.9094 13 1 2.8729 -3.0556 5.9394 14 1 4.0727 -5.1305 5.5703 15 1 4.2825 -3.3095 3.9826 16 6 2.2844 -2.8430 -0.0582 17 6 1.7740 -2.1421 -1.3212 18 7 2.0226 -0.6995 -1.1945 19 6 2.6945 -0.0317 -2.1531 20 8 2.8932 1.1591 -2.0369 21 6 3.1988 -0.7646 -3.3696 22 6 3.9097 0.2032 -4.2801 23 6 3.2037 0.8738 -5.2616 24 6 3.8535 1.7622 -6.0975 25 6 5.2126 1.9810 -5.9529 26 9 5.8482 2.8496 -6.7693 27 6 5.9206 1.3085 -4.9686 28 9 7.2472 1.5200 -4.8259 29 6 5.2669 0.4196 -4.1329 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.5987 -0.2724 2.1350 34 1 3.1239 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 1.5967 -6.2289 5.1552 37 1 2.0200 -3.8998 -0.0967 38 1 3.3678 -2.7405 0.0022 39 1 0.7044 -2.3203 -1.4312 40 1 2.3025 -2.5287 -2.1925 41 1 2.3574 -1.2106 -3.8998 42 1 3.8904 -1.5484 -3.0607 43 1 2.1433 0.7032 -5.3752 44 1 3.3000 2.2888 -6.8609 45 1 5.8174 -0.1051 -3.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044727340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:57 Heat of formation + Delta-G solvation = -107.515953 kcal Electronic energy + Delta-G solvation = -29086.393883 eV Core-core repulsion = 24739.160252 eV Total energy + Delta-G solvation = -4347.233632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.53336 -49.62055 -41.53436 -40.06085 -38.73899 -36.30570 -34.31658 -33.72531 -32.93007 -31.80361 -31.46298 -28.79454 -28.30163 -25.81547 -24.30421 -24.24883 -23.68550 -22.66166 -21.50423 -20.06622 -19.05543 -18.91661 -18.28783 -18.23135 -17.93384 -17.35982 -16.78634 -16.76857 -16.26425 -16.05118 -15.84798 -15.57266 -15.40506 -15.16722 -14.97715 -14.93156 -14.74067 -14.45394 -14.37894 -13.97637 -13.89565 -13.42599 -13.12037 -12.98596 -12.93105 -12.89285 -12.72864 -12.67326 -12.37387 -12.23457 -12.13973 -11.99590 -11.89527 -11.76134 -11.10811 -10.92742 -10.78335 -10.06569 -9.65416 -9.61287 -9.27431 -7.99545 -5.31662 -0.14876 0.01543 1.39060 1.40469 1.47753 1.67317 1.96672 2.42609 2.49856 2.78150 3.27459 3.32243 3.46465 3.52549 3.62038 3.66290 3.93512 4.02326 4.07034 4.11926 4.13270 4.28947 4.35815 4.40465 4.55968 4.59011 4.63158 4.66086 4.76382 4.80624 4.84856 4.87239 4.92408 5.03308 5.06098 5.09343 5.11310 5.29059 5.34079 5.36837 5.57107 5.68795 5.73948 5.81834 6.24946 6.50370 7.11126 7.21720 7.88731 8.05707 9.21756 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002362 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.698619 B =11849.978751 C =12485.041150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.086 0.914 4 C -0.129 4.129 5 C 0.175 3.825 6 H 0.055 0.945 7 N -0.754 5.754 8 C -0.218 4.218 9 H 0.064 0.936 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.283 1.283 14 H -0.300 1.300 15 H -0.255 1.255 16 C -0.146 4.146 17 C 0.112 3.888 18 N -0.601 5.601 19 C 0.516 3.484 20 O -0.580 6.580 21 C -0.100 4.100 22 C -0.047 4.047 23 C -0.080 4.080 24 C -0.119 4.119 25 C 0.044 3.956 26 F -0.142 7.142 27 C 0.043 3.957 28 F -0.145 7.145 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.361 0.639 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 13.357 -23.405 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.168 4.168 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.397 5.397 8 C -0.349 4.349 9 H 0.082 0.918 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.777 3.223 13 H -0.209 1.209 14 H -0.227 1.227 15 H -0.180 1.180 16 C -0.187 4.187 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.305 3.695 20 O -0.460 6.460 21 C -0.139 4.139 22 C -0.048 4.048 23 C -0.098 4.098 24 C -0.137 4.137 25 C 0.024 3.976 26 F -0.121 7.121 27 C 0.023 3.977 28 F -0.123 7.123 29 C -0.138 4.138 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.194 0.806 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.166 0.834 42 H 0.147 0.853 43 H 0.188 0.812 44 H 0.189 0.811 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.250 13.853 -23.363 27.254 hybrid contribution 1.530 0.191 1.286 2.008 sum 3.780 14.044 -22.076 26.436 Atomic orbital electron populations 1.22086 0.93636 1.02847 1.02683 1.20915 0.95020 0.96343 0.83425 0.89539 1.22067 1.00860 0.95706 0.98142 1.20446 0.97300 0.89994 0.85470 0.92744 1.42891 1.37533 1.29544 1.29709 1.19019 1.09742 1.00254 1.05923 0.91820 1.25411 1.02251 0.97996 0.99937 1.69863 1.45145 1.21595 1.26851 0.85507 0.80474 0.77208 0.79111 1.20932 1.22720 1.18029 1.22460 1.00542 1.00210 0.95442 1.21947 1.02582 0.77871 0.98667 1.48299 1.55030 1.09942 1.20047 1.20970 0.76893 0.87111 0.84497 1.90710 1.58738 1.17061 1.79532 1.20859 1.03442 0.97323 0.92238 1.19448 0.92017 0.97442 0.95903 1.21346 1.01754 0.93768 0.92909 1.21365 0.90625 0.99806 1.01919 1.18027 0.92644 0.94271 0.92700 1.91489 1.82439 1.67307 1.70857 1.17923 0.78164 1.01884 0.99720 1.91484 1.31417 1.94072 1.95358 1.21117 0.95693 0.98024 0.98956 0.91823 0.91117 0.91763 0.90783 0.92629 0.80624 0.93560 0.91755 0.92708 0.89725 0.86304 0.83435 0.85296 0.81212 0.81117 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.02 71.98 0.65 -2.45 16 2 C 0.15 3.38 3.19 44.83 0.14 3.52 16 3 H 0.09 2.22 7.01 -2.39 -0.02 2.20 16 4 C -0.13 -3.54 4.99 30.53 0.15 -3.39 16 5 C 0.18 5.69 2.53 45.02 0.11 5.80 16 6 H 0.05 1.84 6.43 -2.39 -0.02 1.83 16 7 N -0.75 -32.51 4.92 -322.82 -1.59 -34.10 16 8 C -0.22 -11.64 10.41 84.03 0.87 -10.77 16 9 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 10 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 11 N -0.98 -61.26 13.97 21.65 0.30 -60.96 16 12 Si 0.95 44.59 27.73 68.60 1.90 46.50 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 15 H -0.26 -10.90 6.52 99.48 0.65 -10.25 16 16 C -0.15 -3.87 5.66 30.67 0.17 -3.69 16 17 C 0.11 1.86 5.93 86.36 0.51 2.37 16 18 N -0.60 -11.75 2.68 -795.82 -2.14 -13.89 16 19 C 0.52 10.12 7.69 87.66 0.67 10.80 16 20 O -0.58 -16.27 15.45 -3.02 -0.05 -16.32 16 21 C -0.10 -1.07 4.18 29.10 0.12 -0.95 16 22 C -0.05 -0.68 4.37 -19.86 -0.09 -0.77 16 23 C -0.08 -0.94 9.70 22.27 0.22 -0.73 16 24 C -0.12 -1.62 10.02 22.31 0.22 -1.40 16 25 C 0.04 0.87 7.31 22.41 0.16 1.03 16 26 F -0.14 -3.17 17.18 44.97 0.77 -2.40 16 27 C 0.04 0.93 7.31 22.41 0.16 1.09 16 28 F -0.14 -3.59 17.18 44.97 0.77 -2.82 16 29 C -0.12 -2.14 9.68 22.31 0.22 -1.93 16 30 H 0.06 1.32 5.74 -2.39 -0.01 1.31 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.36 15.43 5.66 -92.71 -0.52 14.91 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.27 7.52 -2.39 -0.02 1.26 16 40 H 0.12 1.11 5.93 -2.39 -0.01 1.09 16 41 H 0.15 0.54 7.88 -2.39 -0.02 0.52 16 42 H 0.13 0.97 7.64 -2.39 -0.02 0.95 16 43 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 44 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.85 370.54 5.20 -68.65 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.44 Total: 20.00 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.78 Total: -4.65 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.42 Total: -108.95 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.05 Total: -16.32 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.55 Total: -5.22 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.50 kcal Total: -73.85 5.20 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.868 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds