Wall clock time and date at job start Tue Mar 31 2020 21:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58814 * 2 1 4 4 C 1.53163 * 109.70695 * 239.63737 * 2 1 3 5 5 C 1.53038 * 109.32900 * 185.49908 * 4 2 1 6 6 H 1.08999 * 109.46366 * 181.38772 * 5 4 2 7 7 N 1.46502 * 109.46099 * 301.36036 * 5 4 2 8 8 C 1.36937 * 119.99831 * 205.02085 * 7 5 4 9 9 H 1.07997 * 120.00268 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99981 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99946 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47393 * 240.00276 * 12 10 8 15 15 H 1.48504 * 109.47115 * 120.00334 * 12 10 8 16 16 C 1.53042 * 109.52307 * 61.37467 * 5 4 2 17 17 C 1.53188 * 109.31548 * 298.63984 * 16 5 4 18 18 N 1.46926 * 109.58593 * 120.28798 * 2 1 3 19 19 C 1.34776 * 120.62895 * 353.55849 * 18 2 1 20 20 O 1.21282 * 120.00298 * 354.20601 * 19 18 2 21 21 C 1.50702 * 119.99870 * 174.20999 * 19 18 2 22 22 C 1.50698 * 109.47310 * 179.97438 * 21 19 18 23 23 C 1.38257 * 119.96411 * 269.72953 * 22 21 19 24 24 C 1.38218 * 120.06926 * 179.72807 * 23 22 21 25 25 C 1.38416 * 119.99564 * 0.53782 * 24 23 22 26 26 F 1.35097 * 120.02996 * 179.74960 * 25 24 23 27 27 C 1.38647 * 119.93101 * 359.73185 * 25 24 23 28 28 F 1.35098 * 120.03407 * 180.02562 * 27 25 24 29 29 C 1.38216 * 119.96242 * 89.99733 * 22 21 19 30 30 H 1.09003 * 109.46787 * 305.45485 * 1 2 3 31 31 H 1.08998 * 109.46943 * 65.45635 * 1 2 3 32 32 H 1.09003 * 109.46825 * 185.45704 * 1 2 3 33 33 H 1.09002 * 109.47764 * 65.55175 * 4 2 1 34 34 H 1.08993 * 109.50544 * 305.46961 * 4 2 1 35 35 H 0.97001 * 119.99913 * 25.02701 * 7 5 4 36 36 H 0.97003 * 120.00097 * 359.97438 * 11 10 8 37 37 H 1.08999 * 109.49954 * 58.59574 * 16 5 4 38 38 H 1.09005 * 109.49491 * 178.65963 * 16 5 4 39 39 H 1.08999 * 109.58822 * 174.42476 * 17 16 5 40 40 H 1.09000 * 109.58643 * 294.70783 * 17 16 5 41 41 H 1.09002 * 109.46789 * 300.00112 * 21 19 18 42 42 H 1.09006 * 109.47244 * 59.99434 * 21 19 18 43 43 H 1.08000 * 119.96411 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.00170 * 180.27246 * 24 23 22 45 45 H 1.07994 * 120.00364 * 0.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2441 5 6 3.5706 -0.8443 -1.1674 6 1 3.9428 -1.3408 -2.0635 7 7 4.1573 0.4947 -1.0721 8 6 5.4415 0.7112 -1.4954 9 1 6.0217 -0.1049 -1.8999 10 6 5.9973 1.9801 -1.4055 11 7 5.2901 2.9749 -0.9130 12 14 7.7488 2.2757 -1.9836 13 1 8.3234 1.0043 -2.4922 14 1 8.5680 2.7704 -0.8481 15 1 7.7472 3.2875 -3.0706 16 6 3.9602 -1.6608 0.0670 17 6 3.4655 -0.9426 1.3264 18 7 2.0226 -0.6981 1.1953 19 6 1.1670 -1.1069 2.1531 20 8 -0.0065 -0.8085 2.0856 21 6 1.6687 -1.9348 3.3082 22 6 0.5216 -2.2572 4.2307 23 6 0.2184 -1.4077 5.2786 24 6 -0.8367 -1.6984 6.1227 25 6 -1.5841 -2.8467 5.9261 26 9 -2.6124 -3.1341 6.7538 27 6 -1.2765 -3.7014 4.8787 28 9 -2.0050 -4.8225 4.6845 29 6 -0.2228 -3.4046 4.0318 30 1 -0.3633 0.5961 0.8371 31 1 -0.3633 0.4269 -0.9348 32 1 -0.3633 -1.0231 0.0977 33 1 1.7687 -0.1671 -2.1360 34 1 1.6080 -1.7256 -1.2903 35 1 3.6362 1.2279 -0.7090 36 1 4.3804 2.8215 -0.6132 37 1 3.5037 -2.6489 0.0086 38 1 5.0447 -1.7629 0.1082 39 1 3.6525 -1.5667 2.2002 40 1 3.9905 0.0063 1.4360 41 1 2.1027 -2.8604 2.9302 42 1 2.4275 -1.3743 3.8544 43 1 0.8042 -0.5140 5.4353 44 1 -1.0754 -1.0317 6.9383 45 1 0.0180 -4.0698 3.2158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044727341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:00 Heat of formation + Delta-G solvation = -75.791681 kcal Electronic energy + Delta-G solvation = -29612.117877 eV Core-core repulsion = 25266.259912 eV Total energy + Delta-G solvation = -4345.857964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.68254 -48.76009 -40.64661 -39.21869 -37.50446 -34.47249 -33.56860 -32.15822 -31.96554 -31.06423 -28.96762 -27.74419 -26.87312 -24.15711 -23.56735 -23.47363 -22.76108 -21.57528 -20.08908 -18.56540 -18.13429 -17.45846 -17.31548 -17.20668 -16.77039 -16.45545 -15.94992 -15.56735 -15.17367 -14.95704 -14.74189 -14.41043 -14.25249 -14.20304 -13.80634 -13.80089 -13.67380 -13.37230 -13.12134 -12.89592 -12.33602 -12.22327 -12.15108 -12.00993 -11.87395 -11.63952 -11.49820 -11.33858 -10.88681 -10.76511 -10.61241 -10.38226 -10.25855 -10.08364 -9.36760 -9.24217 -9.07714 -9.01007 -8.77794 -8.30195 -7.11905 -6.16949 -3.18002 0.61895 0.73130 2.67049 2.90470 3.27470 3.46839 3.52244 3.52695 3.61924 4.04984 4.19492 4.30132 4.59553 4.60473 4.68498 4.79309 5.01537 5.06871 5.15932 5.20928 5.26136 5.35612 5.43586 5.50318 5.53461 5.58447 5.59212 5.62854 5.71835 5.73676 5.87151 5.96652 6.03491 6.05312 6.15575 6.28404 6.35454 6.45162 6.47395 6.60001 6.61553 6.68670 6.92411 7.59934 7.75155 8.28126 8.67995 9.14237 10.00687 10.15719 11.30846 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002422 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.057094 B =11556.904304 C =11788.991025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.149 4.149 17 C 0.113 3.887 18 N -0.598 5.598 19 C 0.514 3.486 20 O -0.535 6.535 21 C -0.108 4.108 22 C -0.039 4.039 23 C -0.085 4.085 24 C -0.123 4.123 25 C 0.062 3.938 26 F -0.132 7.132 27 C 0.069 3.931 28 F -0.130 7.130 29 C -0.112 4.112 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.366 0.634 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -12.525 11.815 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.190 4.190 17 C -0.010 4.010 18 N -0.331 5.331 19 C 0.302 3.698 20 O -0.413 6.413 21 C -0.147 4.147 22 C -0.040 4.040 23 C -0.103 4.103 24 C -0.141 4.141 25 C 0.042 3.958 26 F -0.110 7.110 27 C 0.048 3.952 28 F -0.109 7.109 29 C -0.131 4.131 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.662 -11.430 11.504 18.386 hybrid contribution -1.458 -1.283 0.306 1.966 sum -10.120 -12.714 11.810 20.088 Atomic orbital electron populations 1.22189 0.93057 1.03078 1.00867 1.21218 0.94917 0.95740 0.83692 0.90781 1.22257 0.97410 1.00360 0.97332 1.20119 0.90228 0.87686 0.95090 0.93050 1.42525 1.14054 1.04731 1.76396 1.20088 0.90431 0.96982 1.38701 0.91694 1.25728 1.06076 0.91566 1.00803 1.70834 1.10889 1.32463 1.44689 0.83169 0.74437 0.74787 0.76123 1.22159 1.22065 1.22069 1.22497 1.01544 0.97928 0.97048 1.21745 0.79150 1.01746 0.98318 1.48191 1.07701 1.57058 1.20169 1.20276 0.86158 0.80305 0.83102 1.90761 1.17093 1.56880 1.76550 1.20808 0.96828 1.02065 0.95022 1.19229 0.96183 0.93445 0.95100 1.20970 0.96556 0.99162 0.93656 1.21040 0.95796 0.95688 1.01616 1.17686 0.89765 0.96814 0.91540 1.91519 1.56074 1.93408 1.70020 1.17592 0.94611 0.85414 0.97537 1.91525 1.76001 1.48692 1.94684 1.20900 0.94279 0.98712 0.99171 0.90565 0.93983 0.92121 0.90830 0.91964 0.79921 0.93414 0.93163 0.90702 0.90962 0.89940 0.87536 0.87345 0.84215 0.83623 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.62 37.16 0.28 -1.74 16 2 C 0.15 2.29 3.19 -67.61 -0.22 2.08 16 3 H 0.07 1.32 6.64 -51.93 -0.34 0.97 16 4 C -0.13 -2.10 5.08 -26.63 -0.14 -2.24 16 5 C 0.18 3.21 3.10 -67.89 -0.21 3.00 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.56 16 7 N -0.73 -16.53 4.31 -53.38 -0.23 -16.76 16 8 C -0.33 -8.60 9.93 -15.06 -0.15 -8.75 16 9 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 11 N -0.94 -27.82 13.70 55.49 0.76 -27.06 16 12 Si 1.08 24.89 29.92 -169.99 -5.09 19.81 16 13 H -0.30 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 C -0.15 -2.25 5.78 -26.61 -0.15 -2.40 16 17 C 0.11 1.56 6.09 -3.71 -0.02 1.54 16 18 N -0.60 -8.42 2.97 -165.23 -0.49 -8.91 16 19 C 0.51 6.78 7.50 -10.98 -0.08 6.70 16 20 O -0.53 -8.44 11.60 5.56 0.06 -8.38 16 21 C -0.11 -0.99 4.19 -29.04 -0.12 -1.11 16 22 C -0.04 -0.38 4.37 -104.62 -0.46 -0.84 16 23 C -0.09 -0.77 9.69 -39.58 -0.38 -1.15 16 24 C -0.12 -1.11 10.02 -39.52 -0.40 -1.51 16 25 C 0.06 0.68 7.31 -39.36 -0.29 0.39 16 26 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 27 C 0.07 0.78 7.31 -39.37 -0.29 0.49 16 28 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 29 C -0.11 -1.14 9.68 -39.53 -0.38 -1.52 16 30 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.94 6.95 -51.93 -0.36 0.57 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.37 8.64 4.89 -40.82 -0.20 8.44 16 36 H 0.25 7.39 6.77 -40.82 -0.28 7.11 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 40 H 0.08 1.40 7.74 -51.93 -0.40 0.99 16 41 H 0.11 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.11 0.81 7.65 -51.93 -0.40 0.42 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -30.90 366.30 -8.53 -39.43 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.05 Total: 7.79 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.10 Total: -8.36 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.04 Total: -52.73 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.06 Total: -8.38 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.90 -8.53 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044727341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.364 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds